Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc10g079740.2 Solanum lycopersicum HOM05D004217 ORTHO05D005561 3.0e-160 568.5 306 100.0
Sopen10g030370 Solanum pennellii HOM05D004217 ORTHO05D005561 3.0e-160 568.5 306 100.0
PGSC0003DMG400029850 Solanum tuberosum HOM05D004217 ORTHO05D005561 8.2e-158 560.5 306 98.7
Peaxi162Scf01378g00115 Petunia axillaris HOM05D004217 ORTHO05D005561 9.4e-154 547.0 303 95.7
CAN.G322.6 Capsicum annuum HOM05D004217 ORTHO05D005561 2.0e-151 539.3 306 95.4
Peaxi162Scf00620g00012 Petunia axillaris HOM05D004217 ORTHO05D005561 3.1e-149 531.9 303 94.1
SGA_v2.0_scaffold273G46404 Striga asiatica HOM05D004217 ORTHO05D005561 5.2e-136 488.0 308 85.1
Migut.K00125 Erythranthe guttata HOM05D004217 ORTHO05D005561 1.1e-133 480.3 308 83.4
Actinidia39171 Actinidia chinensis HOM05D004217 ORTHO05D005561 1.7e-131 473.0 306 81.7
CSS0007689 Camellia sinensis var. sinensis HOM05D004217 ORTHO05D005561 5.0e-131 471.5 306 80.4
unitig_748.g7226 Utricularia gibba HOM05D004217 ORTHO05D005561 1.1e-130 470.3 310 80.3
GSVIVG01027868001 Vitis vinifera HOM05D004217 ORTHO05D005561 1.5e-130 469.9 306 81.4
Dinv34387 Davidia involucrata HOM05D004217 ORTHO05D005561 7.2e-130 467.6 306 82.4
SalBow1G4717 Salvia bowleyana HOM05D004217 ORTHO05D005561 7.2e-130 467.6 323 80.5
Oeu029495.1 Olea europaea HOM05D004217 ORTHO05D005561 9.5e-130 467.2 310 81.9
MSTRG.15652 Avicennia marina HOM05D004217 ORTHO05D005561 1.2e-129 466.8 351 74.1
Nitab4.5_0000571g0060 Nicotiana tabacum HOM05D004217 ORTHO05D005561 2.1e-129 466.1 306 85.0
Lj2A395G21 Lonicera japonica HOM05D004217 ORTHO05D005561 8.0e-129 464.2 305 81.0
CAN.G541.30 Capsicum annuum HOM05D004217 ORTHO05D005561 1.4e-128 463.4 306 84.0
vmacro07818 Vaccinium macrocarpon HOM05D004217 ORTHO05D005561 1.8e-128 463.0 306 80.1
Nitab4.5_0001874g0050 Nicotiana tabacum HOM05D004217 ORTHO05D005561 2.3e-128 462.6 306 84.3
Potri.006G046200 Populus trichocarpa HOM05D004217 ORTHO05D005561 4.0e-128 461.8 306 79.4
Cc06_g18810 Coffea canephora HOM05D004217 ORTHO05D005561 8.9e-128 460.7 306 81.0
Duzib264G1114 Durio zibethinus HOM05D004217 ORTHO05D005561 8.9e-128 460.7 306 79.4
RhsimUnG0216700 Rhododendron simsii HOM05D000657 ORTHO05D002092 1.2e-127 460.3 314 78.3
Nitab4.5_0000636g0010 Nicotiana tabacum HOM05D004217 ORTHO05D005561 2.0e-127 459.5 304 83.9
Gohir.A11G057400 Gossypium hirsutum HOM05D004217 ORTHO05D005561 2.6e-127 459.1 306 79.1
Gohir.D11G061600 Gossypium hirsutum HOM05D004217 ORTHO05D005561 2.6e-127 459.1 306 79.1
RhsimUnG0219800 Rhododendron simsii HOM05D004217 ORTHO05D005561 4.4e-127 458.4 314 78.3
Gorai.007G066400 Gossypium raimondii HOM05D004217 ORTHO05D005561 7.5e-127 457.6 306 78.8
Thecc.01G136700 Theobroma cacao HOM05D004217 ORTHO05D005561 7.5e-127 457.6 307 79.2
Manes.09G007800 Manihot esculenta HOM05D004217 ORTHO05D005561 9.8e-127 457.2 306 80.1
TAR623G0725 Trochodendron aralioides HOM05D004217 ORTHO05D005561 1.7e-126 456.4 306 79.1
Ah.04g151110 Amaranthus hybridus HOM05D004217 ORTHO05D005561 6.3e-126 454.5 306 78.4
AUR62030333 Chenopodium quinoa HOM05D004217 ORTHO05D005561 2.4e-125 452.6 306 77.8
AUR62031989 Chenopodium quinoa HOM05D004217 ORTHO05D005561 2.4e-125 452.6 306 77.5
TWI77G0241 Tripterygium wilfordii HOM05D004217 ORTHO05D005561 4.1e-125 451.8 307 78.2
GSVIVG01034596001 Vitis vinifera HOM05D004217 ORTHO05D005561 4.1e-125 451.8 306 78.4
Lsat_1_v5_gn_8_82561 Lactuca sativa HOM05D004217 ORTHO05D005561 2.0e-124 449.5 300 79.7
TWI53G1501 Tripterygium wilfordii HOM05D004217 ORTHO05D005561 2.0e-124 449.5 306 77.8
Ciclev10021431m.g Citrus clementina HOM05D004217 ORTHO05D005561 7.8e-124 447.6 284 83.1
EL10Ac3g07207 Beta vulgaris HOM05D004217 ORTHO05D005561 1.0e-123 447.2 306 76.8
Sc13g0001310 Simmondsia chinensis HOM05D004217 ORTHO05D005561 1.3e-123 446.8 281 82.9
Hund24631 Selenicereus undatus HOM05D004217 ORTHO05D005561 1.7e-123 446.4 306 77.5
HanXRQChr06g0176941 Helianthus annuus HOM05D004217 ORTHO05D005561 3.8e-123 445.3 308 77.6
HanXRQChr10g0316411 Helianthus annuus HOM05D004217 ORTHO05D005561 3.8e-123 445.3 308 77.6
Nn7g37855 Nelumbo nucifera HOM05D004217 ORTHO05D005561 1.1e-122 443.7 306 77.1
Nn7g36831 Nelumbo nucifera HOM05D004217 ORTHO05D005561 1.5e-122 443.4 306 77.1
Cpa.g.sc5.203 Carica papaya HOM05D004217 ORTHO05D005561 1.9e-122 443.0 306 76.5
Eucgr.A00412 Eucalyptus grandis HOM05D004217 ORTHO05D005561 2.1e-121 439.5 306 75.5
Atru.chr1.1483 Acer truncatum HOM05D004217 ORTHO05D005561 1.4e-120 436.8 306 75.5
THA.LOC104824417 Tarenaya hassleriana HOM05D004217 ORTHO05D005561 1.4e-120 436.8 306 75.5
Cfa016692 Carpinus fangiana HOM05D004217 ORTHO05D005561 6.8e-120 434.5 287 78.4
Gohir.D03G072900 Gossypium hirsutum HOM05D004217 ORTHO05D005561 4.4e-119 431.8 265 84.5
Gohir.A03G048200 Gossypium hirsutum HOM05D004217 ORTHO05D005561 9.8e-119 430.6 266 84.2
Sc25g0005400 Simmondsia chinensis HOM05D004217 ORTHO05D005561 9.8e-119 430.6 306 74.5
DCAR_020547 Daucus carota HOM05D004217 ORTHO05D005561 1.3e-118 430.3 285 79.6
Aqoxy2G04056 Aquilegia oxysepala HOM05D004217 ORTHO05D005561 3.7e-118 428.7 306 74.2
Gohir.D11G169000 Gossypium hirsutum HOM05D004217 ORTHO05D005561 4.9e-118 428.3 267 83.5
Gohir.A03G146300 Gossypium hirsutum HOM05D004217 ORTHO05D005561 6.4e-118 427.9 265 83.8
CiPaw.10G038800 Carya illinoinensis HOM05D004217 ORTHO05D005561 8.3e-118 427.6 283 78.1
CANSAT78G1576 Cannabis sativa HOM05D004217 ORTHO05D005561 1.4e-117 426.8 296 76.0
MBI14_g19459_MAGBIO Magnolia biondii HOM05D004217 ORTHO05D005561 1.6e-116 423.3 306 73.2
PSO339G2795 Papaver somniferum HOM05D004217 ORTHO05D005561 2.0e-116 422.9 283 77.4
THA.LOC104803276 Tarenaya hassleriana HOM05D004217 ORTHO05D005561 2.7e-116 422.5 305 72.5
MBI15_g40529_MAGBIO Magnolia biondii HOM05D004217 ORTHO05D005561 3.5e-116 422.2 306 72.2
RcHm_v2.0_Chr2g0125061 Rosa chinensis HOM05D004217 ORTHO05D005561 2.3e-115 419.5 293 75.4
arahy.Tifrunner.gnm1.ann1.GAG45E Arachis hypogaea HOM05D004217 ORTHO05D005561 5.0e-115 418.3 282 77.7
CsaV3_3G041090 Cucumis sativus L. HOM05D004217 ORTHO05D005561 5.0e-115 418.3 297 73.7
MELO3C019047.2 Cucumis melo HOM05D004217 ORTHO05D005561 6.6e-115 417.9 297 73.4
CsaV3_4G027820 Cucumis sativus L. HOM05D004217 ORTHO05D005561 6.6e-115 417.9 297 73.7
arahy.Tifrunner.gnm1.ann1.35MU93 Arachis hypogaea HOM05D004217 ORTHO05D005561 8.6e-115 417.5 282 77.7
PGR142G4280 Punica granatum HOM05D004217 ORTHO05D005561 8.6e-115 417.5 306 72.5
TAR369G0413 Trochodendron aralioides HOM05D004217 ORTHO05D005561 8.6e-115 417.5 307 74.6
Lalb_Chr04g0255801 Lupinus albus HOM05D004217 ORTHO05D005561 1.5e-114 416.8 290 75.2
BcaB01g03471 Brassica carinata HOM05D004217 ORTHO05D005561 1.9e-114 416.4 305 71.8
Thhalv10017004m.g Eutrema salsugineum HOM05D004217 ORTHO05D005561 1.9e-114 416.4 305 72.5
MD14G1084500 Malus domestica HOM05D004217 ORTHO05D005561 2.5e-114 416.0 298 74.5
Sp4g23650 Schrenkiella parvula HOM05D004217 ORTHO05D005561 2.5e-114 416.0 305 72.1
Sed0000264 Sechium edule HOM05D004217 ORTHO05D005561 2.5e-114 416.0 306 72.2
C03p27740 Brassica napus HOM05D004217 ORTHO05D005561 4.3e-114 415.2 296 73.6
Sabra06G0031800 Salix brachista HOM05D004217 ORTHO05D005561 4.3e-114 415.2 306 72.9
Aa31LG5G11710 Aethionema arabicum HOM05D004217 ORTHO05D005561 5.6e-114 414.8 290 75.2
A03p23240 Brassica napus HOM05D004217 ORTHO05D005561 7.3e-114 414.5 305 71.8
Gohir.A12G042000 Gossypium hirsutum HOM05D004217 ORTHO05D005561 7.3e-114 414.5 266 83.1
PSO384G3185 Papaver somniferum HOM05D004217 ORTHO05D005561 9.5e-114 414.1 283 76.0
AT2G41350 Arabidopsis thaliana HOM05D004217 ORTHO05D005561 2.1e-113 412.9 305 71.5
BcaC01g05340 Brassica carinata HOM05D004217 ORTHO05D005561 2.1e-113 412.9 296 73.3
MD12G1092800 Malus domestica HOM05D004217 ORTHO05D005561 2.8e-113 412.5 299 74.2
Carub.0004s2365 Capsella rubella HOM05D004217 ORTHO05D005561 4.7e-113 411.8 305 71.1
Ca_16232_v3 Cicer arietinum L. HOM05D004217 ORTHO05D005561 6.2e-113 411.4 286 75.2
VMungo0464G0563 Vigna mungo HOM05D004217 ORTHO05D005561 6.2e-113 411.4 276 76.8
Lj6g0025691 Lotus japonicus HOM05D004217 ORTHO05D005561 8.0e-113 411.0 286 74.1
Haze_19719 Corylus avellana HOM05D004217 ORTHO05D005561 1.4e-112 410.2 323 69.3
BraA03t11543Z Brassica rapa HOM05D004217 ORTHO05D005561 1.8e-112 409.8 306 71.6
CARHR136470 Cardamine hirsuta HOM05D004217 ORTHO05D005561 1.8e-112 409.8 305 70.8
QL07p008431 Quercus lobata HOM05D004217 ORTHO05D005561 4.0e-112 408.7 324 67.6
BolC3t15143H Brassica oleracea HOM05D004217 ORTHO05D005561 5.2e-112 408.3 297 73.1
ClCG04G004230 Citrullus lanatus HOM05D004217 ORTHO05D005561 6.8e-112 407.9 326 67.8
FvH4_6g25170 Fragaria vesca HOM05D004217 ORTHO05D005561 6.8e-112 407.9 283 75.6
FAN14G1007 Fragaria x ananassa HOM05D004217 ORTHO05D005561 6.8e-112 407.9 283 75.6
TPR.G5939 Trifolium pratense HOM05D004217 ORTHO05D005561 1.5e-111 406.8 278 74.8
AL4G39350 Arabidopsis lyrata HOM05D004217 ORTHO05D005561 2.0e-111 406.4 305 71.1
Phvul.004G165200 Phaseolus vulgaris HOM05D004217 ORTHO05D005561 3.4e-111 405.6 276 76.1
ATR0580G123 Amborella trichopoda HOM05D004217 ORTHO05D005561 5.8e-111 404.8 306 70.6
FAN09G3751 Fragaria x ananassa HOM05D004217 ORTHO05D005561 5.8e-111 404.8 283 75.3
Lalb_Chr17g0341031 Lupinus albus HOM05D004217 ORTHO05D005561 7.5e-111 404.4 272 76.5
Gohir.D11G296900 Gossypium hirsutum HOM05D004217 ORTHO05D005561 1.7e-110 403.3 284 77.5
Prupe.7G043700 Prunus persica HOM05D004217 ORTHO05D005561 1.7e-110 403.3 298 72.1
TPR.G15791 Trifolium pratense HOM05D004217 ORTHO05D005561 3.7e-110 402.1 278 73.7
Glyma.07G084800 Glycine max HOM05D004217 ORTHO05D005561 8.3e-110 401.0 283 73.1
Glyma.09G192100 Glycine max HOM05D004217 ORTHO05D005561 3.2e-109 399.1 283 72.8
Medtr3g079220 Medicago truncatula HOM05D004217 ORTHO05D005561 4.6e-108 395.2 275 74.5
CDE04G1366 Ceratophyllum demersum HOM05D004217 ORTHO05D005561 7.8e-108 394.4 280 72.1
CSS0039334 Camellia sinensis var. sinensis HOM05D004217 ORTHO05D005561 5.1e-107 391.7 306 68.3
Gohir.A07G124200 Gossypium hirsutum HOM05D004217 ORTHO05D005561 2.1e-105 386.3 265 79.2
Psat5g112680 Pisum sativum HOM05D004217 ORTHO05D005561 2.8e-105 386.0 278 70.5
vmacro08529 Vaccinium macrocarpon HOM05D004217 ORTHO05D005561 8.9e-104 380.9 291 68.7
Actinidia20826 Actinidia chinensis HOM05D004217 ORTHO05D005561 1.5e-103 380.2 276 71.4
Sc13g0001330 Simmondsia chinensis HOM05D004217 ORTHO05D005561 9.9e-103 377.5 264 75.8
Gohir.A02G062500 Gossypium hirsutum HOM05D004217 ORTHO05D005561 2.9e-102 375.9 233 82.0
COL.COLO4_35807 Corchorus olitorius HOM05D004217 ORTHO05D005561 4.9e-102 375.2 291 70.4
Rhsim04G0175000 Rhododendron simsii HOM05D004217 ORTHO05D005561 1.4e-101 373.6 304 65.1
HPP92_018983 Vanilla planifolia HOM05D004217 ORTHO05D005561 1.4e-101 373.6 305 66.2
SalBow6G4102 Salvia bowleyana HOM05D004217 ORTHO05D005561 3.2e-101 372.5 294 65.3
QL07p008692 Quercus lobata HOM05D004217 ORTHO05D005561 1.2e-100 370.5 352 59.4
SMO118G0157 Selaginella moellendorffii HOM05D004217 ORTHO05D005561 9.5e-98 360.9 278 66.5
Pp3c1_31980 Physcomitrium patens HOM05D004217 ORTHO05D005561 2.0e-95 353.2 280 65.0
Hma1.2p1_0521F.1_g171490 Hydrangea macrophylla HOM05D004217 ORTHO05D005561 2.4e-93 346.3 212 84.9
DCAR_027531 Daucus carota HOM05D004217 ORTHO05D005561 3.4e-87 325.9 285 66.0
AagrBONN_evm.TU.Sc2ySwM_362.1682 Anthoceros agrestis HOM05D004217 ORTHO05D005561 3.8e-86 322.4 287 58.5
Zm00001eb178240 Zea mays HOM05D004217 ORTHO05D005561 3.6e-81 305.8 307 57.3
EL10Ac6g14020 Beta vulgaris HOM05D004217 ORTHO05D005561 3.8e-78 295.8 267 62.5
Eucgr.A00321 Eucalyptus grandis HOM05D004217 ORTHO05D005561 3.8e-78 295.8 224 70.1
CDE07G0389 Ceratophyllum demersum HOM05D004217 ORTHO05D005561 1.4e-72 277.3 203 70.0
SEGI_06876 Sequoiadendron giganteum HOM05D004217 ORTHO05D005561 1.4e-72 277.3 274 52.6
SHI05064 Sapria himalayana HOM05D004217 ORTHO05D005561 1.2e-71 274.2 198 68.7
ECA236G0163 Erigeron canadensis HOM05D004217 ORTHO05D005561 4.5e-71 272.3 163 84.7
Os08g0240600 Oryza sativa ssp. japonica HOM05D004217 ORTHO05D005561 6.4e-70 268.5 252 59.9
Mapoly0239s0006 Marchantia polymorpha HOM05D004217 ORTHO05D005561 2.5e-69 266.5 276 54.7
Dinv08497 Davidia involucrata HOM05D004217 ORTHO05D005561 4.0e-64 249.2 205 69.3
CBR_g38257 Chara braunii HOM05D004217 ORTHO05D005561 2.7e-60 236.5 252 48.4
Actinidia32317 Actinidia chinensis HOM05D004217 ORTHO05D005561 6.7e-59 231.9 163 74.8
A04p31520 Brassica napus HOM05D004217 ORTHO05D005561 3.1e-40 169.9 184 53.8
BraA04t18609Z Brassica rapa HOM05D004217 ORTHO05D005561 3.1e-40 169.9 184 53.8
Carub.0004s0112 Capsella rubella HOM05D004217 ORTHO05D005561 9.1e-40 168.3 169 58.6
C04p68950 Brassica napus HOM05D004217 ORTHO05D005561 4.2e-37 159.5 107 72.0
BolC4t28396H Brassica oleracea HOM05D004217 ORTHO05D005561 4.2e-37 159.5 107 72.0
Peaxi162Scf01233g00007 Petunia axillaris HOM05D004217 ORTHO05D005561 7.4e-34 148.7 96 82.3
Sabra16G0048200 Salix brachista HOM05D000002 ORTHO05D000047 7.4e-34 148.7 151 57.6
BcaC02g12897 Brassica carinata HOM05D004217 ORTHO05D005561 2.0e-31 140.6 96 72.9
SHI39628 Sapria himalayana HOM05D004217 ORTHO05D005561 1.7e-30 137.5 81 84.0
MBI15_g39623_MAGBIO Magnolia biondii HOM05D004217 ORTHO05D016559 9.1e-24 115.2 101 62.4
MD12G1067200 Malus domestica HOM05D004217 ORTHO05D005561 2.7e-20 103.6 82 63.4
Aqoxy5G00134 Aquilegia oxysepala HOM05D004217 ORTHO05D016559 1.2e-18 98.2 86 65.1
AT2G21980 Arabidopsis thaliana HOM05D004217 ORTHO05D005561 3.1e-16 90.1 58 79.3
FAN17G2754 Fragaria x ananassa HOM05D004217 ORTHO05D005561 1.0e-14 85.1 52 86.5
arahy.Tifrunner.gnm1.ann1.505PCM Arachis hypogaea HOM05D003289 ORTHO05D016559 8.6e-14 82.0 77 54.5
arahy.Tifrunner.gnm1.ann1.XNH8SK Arachis hypogaea HOM05D004217 ORTHO05D016559 1.1e-13 81.6 77 51.9
FAN22G2236 Fragaria x ananassa HOM05D004217 ORTHO05D005561 9.5e-13 78.6 70 68.6
AL7G43680 Arabidopsis lyrata HOM05D004217 ORTHO05D026831 2.8e-12 77.0 68 58.8
AL7G51080 Arabidopsis lyrata HOM05D004217 ORTHO05D080694 1.0e-11 75.1 68 58.8
AL4G11300 Arabidopsis lyrata HOM05D004217 ORTHO05D005561 2.3e-11 73.9 59 57.6
arahy.Tifrunner.gnm1.ann1.5F2ED3 Arachis hypogaea HOM05D004217 ORTHO05D016559 2.3e-11 73.9 77 51.9
arahy.Tifrunner.gnm1.ann1.CY1WZS Arachis hypogaea HOM05D004217 ORTHO05D016559 3.0e-11 73.6 82 46.3
arahy.Tifrunner.gnm1.ann1.2C13MW Arachis hypogaea HOM05D004217 ORTHO05D016559 1.2e-10 71.6 85 44.7
BcaB04g18853 Brassica carinata HOM05D004217 ORTHO05D094331 1.4e-08 64.7 44 70.5
BcaB06g29630 Brassica carinata HOM05D004217 ORTHO05D095231 7.0e-08 62.4 43 69.8
BcaB06g29631 Brassica carinata HOM05D002050 ORTHO05D001949 7.0e-08 62.4 43 69.8
ATR0564G208 Amborella trichopoda HOM05D004217 ORTHO05D064567 1.2e-07 61.6 92 39.1


User provided reference genes

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