Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen10g030080 Solanum pennellii HOM05D005510 ORTHO05D006750 2.9e-246 854.7 426 100.0
Solyc10g079440.2 Solanum lycopersicum HOM05D005510 ORTHO05D006750 5.9e-239 830.5 426 96.9
PGSC0003DMG400008133 Solanum tuberosum HOM05D005510 ORTHO05D006750 1.3e-238 829.3 430 96.5
Peaxi162Scf00002g00419 Petunia axillaris HOM05D005510 ORTHO05D006750 2.9e-209 731.9 431 84.0
Nitab4.5_0000646g0280 Nicotiana tabacum HOM05D005510 ORTHO05D006750 3.3e-205 718.4 443 82.6
Dinv14542 Davidia involucrata HOM05D005510 ORTHO05D006750 2.3e-182 642.5 427 74.7
Cc06_g18550 Coffea canephora HOM05D005510 ORTHO05D006750 4.3e-181 638.3 442 70.4
Rhsim13G0197800 Rhododendron simsii HOM05D005510 ORTHO05D006750 3.1e-179 632.1 415 73.7
CSS0010239 Camellia sinensis var. sinensis HOM05D005510 ORTHO05D006750 1.5e-178 629.8 394 75.9
CAN.G641.38 Capsicum annuum HOM05D005510 ORTHO05D006750 3.8e-177 625.2 331 92.4
Actinidia38200 Actinidia chinensis HOM05D005510 ORTHO05D006750 1.9e-176 622.9 396 75.0
Oeu008195.1 Olea europaea HOM05D005510 ORTHO05D006750 7.1e-176 620.9 419 71.4
Ciclev10011846m.g Citrus clementina HOM05D005510 ORTHO05D006750 1.8e-171 606.3 403 73.0
MD14G1100100 Malus domestica HOM05D005510 ORTHO05D006750 1.8e-171 606.3 416 71.9
Prupe.7G023400 Prunus persica HOM05D005510 ORTHO05D006750 1.5e-170 603.2 423 69.5
QL07p015480 Quercus lobata HOM05D005510 ORTHO05D006750 1.5e-170 603.2 423 70.0
Hma1.2p1_1327F.1_g275890 Hydrangea macrophylla HOM05D005510 ORTHO05D006750 1.7e-169 599.7 397 73.6
Lj1C1070G2 Lonicera japonica HOM05D005510 ORTHO05D006750 2.2e-169 599.4 420 69.5
Psat1g087480 Pisum sativum HOM05D005510 ORTHO05D006750 3.8e-169 598.6 419 67.5
Nitab4.5_0002805g0080 Nicotiana tabacum HOM05D005510 ORTHO05D006750 1.9e-168 596.3 352 84.9
Atru.chr8.924 Acer truncatum HOM05D005510 ORTHO05D006750 3.2e-168 595.5 400 71.8
Ca_04447_v3 Cicer arietinum L. HOM05D002043 ORTHO05D002207 9.3e-168 594.0 398 70.4
Medtr6g026730 Medicago truncatula HOM05D005510 ORTHO05D006750 1.6e-167 593.2 391 71.6
DCAR_020612 Daucus carota HOM05D005510 ORTHO05D006750 2.1e-167 592.8 395 72.7
Cfa019896 Carpinus fangiana HOM05D005510 ORTHO05D006750 2.7e-167 592.4 398 71.6
RcHm_v2.0_Chr3g0495031 Rosa chinensis HOM05D005510 ORTHO05D006750 3.5e-167 592.0 398 72.6
GSVIVG01025858001 Vitis vinifera HOM05D005510 ORTHO05D006750 1.8e-166 589.7 397 72.3
Glyma.05G079900 Glycine max HOM05D005510 ORTHO05D006750 3.3e-165 585.5 406 68.5
Manes.10G072300 Manihot esculenta HOM05D005510 ORTHO05D006750 4.3e-165 585.1 405 69.9
Potri.006G026100 Populus trichocarpa HOM05D005510 ORTHO05D006750 4.3e-165 585.1 411 68.9
Nn7g37230 Nelumbo nucifera HOM05D005510 ORTHO05D006750 7.4e-165 584.3 425 67.8
Lsat_1_v5_gn_5_40140 Lactuca sativa HOM05D005510 ORTHO05D006750 1.6e-164 583.2 418 67.5
Lj5g0015267 Lotus japonicus HOM05D005510 ORTHO05D006750 3.7e-164 582.0 395 70.4
SalBow6G2337 Salvia bowleyana HOM05D005510 ORTHO05D006750 8.2e-164 580.9 397 70.0
FvH4_1g29380 Fragaria vesca HOM05D005510 ORTHO05D006750 1.4e-163 580.1 398 70.9
FAN26G2114 Fragaria x ananassa HOM05D005510 ORTHO05D006750 1.4e-163 580.1 398 70.9
PGR042G2248 Punica granatum HOM05D005510 ORTHO05D006750 2.4e-163 579.3 398 70.6
SalBow6G2820 Salvia bowleyana HOM05D005510 ORTHO05D006750 3.1e-163 578.9 397 69.8
Phvul.004G053400 Phaseolus vulgaris HOM05D005510 ORTHO05D006750 4.1e-163 578.6 408 68.1
Cpa.g.sc33.180 Carica papaya HOM05D005510 ORTHO05D006750 9.0e-163 577.4 390 72.3
Duzib093G0795 Durio zibethinus HOM05D005510 ORTHO05D006750 2.6e-162 575.9 396 71.2
arahy.Tifrunner.gnm1.ann1.RHHN50 Arachis hypogaea HOM05D005510 ORTHO05D006750 1.7e-161 573.2 443 65.0
Lalb_Chr02g0157631 Lupinus albus HOM05D005510 ORTHO05D006750 1.7e-161 573.2 427 65.8
PSO384G1661 Papaver somniferum HOM05D005510 ORTHO05D006750 2.9e-161 572.4 392 72.2
CsaV3_4G029010 Cucumis sativus L. HOM05D005510 ORTHO05D006750 3.8e-161 572.0 403 69.2
Hund24472 Selenicereus undatus HOM05D005510 ORTHO05D006750 3.8e-161 572.0 397 68.3
Gorai.002G222700 Gossypium raimondii HOM05D005510 ORTHO05D006750 5.0e-161 571.6 424 66.5
Gohir.D01G179900 Gossypium hirsutum HOM05D005510 ORTHO05D006750 1.1e-160 570.5 424 66.3
Aqoxy3G03066 Aquilegia oxysepala HOM05D005510 ORTHO05D006750 1.4e-160 570.1 391 71.4
Eucgr.A02173 Eucalyptus grandis HOM05D005510 ORTHO05D006750 3.2e-160 568.9 392 70.9
SGA_v2.0_scaffold69G23139 Striga asiatica HOM05D005510 ORTHO05D006750 4.2e-160 568.5 399 69.4
MBI13_g44207_MAGBIO Magnolia biondii HOM05D005510 ORTHO05D006750 1.6e-159 566.6 427 65.6
MELO3C019166.2 Cucumis melo HOM05D005510 ORTHO05D006750 4.6e-159 565.1 403 68.7
Gohir.A01G189700 Gossypium hirsutum HOM05D005510 ORTHO05D006750 4.6e-159 565.1 404 68.8
PSO339G1815 Papaver somniferum HOM05D005510 ORTHO05D006750 6.1e-159 564.7 423 68.1
ATR1096G068 Amborella trichopoda HOM05D005510 ORTHO05D006750 1.0e-158 563.9 422 66.1
arahy.Tifrunner.gnm1.ann1.VC24PE Arachis hypogaea HOM05D005510 ORTHO05D006750 1.0e-158 563.9 468 61.8
HanXRQChr02g0047171 Helianthus annuus HOM05D005510 ORTHO05D006750 1.4e-158 563.5 409 67.2
TWI74G1137 Tripterygium wilfordii HOM05D005510 ORTHO05D006750 1.8e-158 563.1 415 65.8
AUR62020963 Chenopodium quinoa HOM05D005510 ORTHO05D006750 3.0e-158 562.4 426 64.3
Migut.J01685 Erythranthe guttata HOM05D005510 ORTHO05D006750 3.3e-157 558.9 429 65.3
Sabra06G0019200 Salix brachista HOM05D005510 ORTHO05D006750 8.2e-156 554.3 439 63.3
THA.LOC104803249 Tarenaya hassleriana HOM05D005510 ORTHO05D006750 3.1e-155 552.4 407 65.1
HPP92_018208 Vanilla planifolia HOM05D005510 ORTHO05D006750 7.7e-154 547.7 391 65.7
COL.COLO4_37568 Corchorus olitorius HOM05D005510 ORTHO05D006750 3.8e-153 545.4 432 63.2
CDE08G0225 Ceratophyllum demersum HOM05D005510 ORTHO05D006750 5.0e-153 545.0 424 63.4
Aa31LG10G11690 Aethionema arabicum HOM05D005510 ORTHO05D006750 1.1e-152 543.9 398 66.3
EL10Ac3g07380 Beta vulgaris HOM05D005510 ORTHO05D006750 1.1e-152 543.9 423 62.6
AL5G38220 Arabidopsis lyrata HOM05D005510 ORTHO05D006750 4.2e-152 542.0 399 66.2
CANSAT11G0391 Cannabis sativa HOM05D005510 ORTHO05D006750 4.2e-152 542.0 391 66.2
TAR623G1399 Trochodendron aralioides HOM05D005510 ORTHO05D006750 9.4e-152 540.8 434 63.1
Carub.0005s2357 Capsella rubella HOM05D005510 ORTHO05D006750 2.7e-151 539.3 397 67.0
AT3G56840 Arabidopsis thaliana HOM05D005510 ORTHO05D006750 6.1e-151 538.1 399 65.9
EL10Ac3g07382 Beta vulgaris HOM05D005510 ORTHO05D006750 5.1e-150 535.0 457 58.6
BcaC07g40115 Brassica carinata HOM05D005510 ORTHO05D006750 1.5e-149 533.5 399 65.7
Thhalv10005964m.g Eutrema salsugineum HOM05D005510 ORTHO05D006750 5.7e-149 531.6 415 63.6
BolC8t50825H Brassica oleracea HOM05D005510 ORTHO05D006750 4.8e-148 528.5 405 64.2
A09p49660 Brassica napus HOM05D005510 ORTHO05D006750 6.3e-148 528.1 405 64.7
BraA09t40419Z Brassica rapa HOM05D005510 ORTHO05D006750 6.3e-148 528.1 405 64.7
Sp5g05750 Schrenkiella parvula HOM05D005510 ORTHO05D006750 5.3e-147 525.0 405 63.5
Os01g0809900 Oryza sativa ssp. japonica HOM05D005510 ORTHO05D006750 1.5e-146 523.5 414 61.6
Haze_20353 Corylus avellana HOM05D005510 ORTHO05D006750 7.7e-146 521.2 375 67.5
CSS0036939 Camellia sinensis var. sinensis HOM05D005510 ORTHO05D006750 4.2e-144 515.4 329 74.2
unitig_749.g14152 Utricularia gibba HOM05D005510 ORTHO05D006750 1.2e-143 513.8 400 63.5
arahy.Tifrunner.gnm1.ann1.T4STFC Arachis hypogaea HOM05D005510 ORTHO05D006750 3.9e-142 508.8 408 62.5
VMungo0464G0325 Vigna mungo HOM05D005510 ORTHO05D006750 1.5e-141 506.9 458 55.7
Sc13g0000690 Simmondsia chinensis HOM05D005510 ORTHO05D006750 1.1e-139 500.7 399 62.4
BcaC07g39994 Brassica carinata HOM05D005510 ORTHO05D006750 3.8e-137 492.3 405 61.0
AUR62018456 Chenopodium quinoa HOM05D005510 ORTHO05D006750 1.6e-130 470.3 328 66.8
ClCG04G005050 Citrullus lanatus HOM05D005510 ORTHO05D006750 1.7e-129 466.8 367 63.8
Pp3c12_4730 Physcomitrium patens HOM05D005510 ORTHO05D006750 5.5e-128 461.8 397 54.7
ECA246G1668 Erigeron canadensis HOM05D005510 ORTHO05D006750 1.2e-127 460.7 395 58.5
Thecc.05G124100 Theobroma cacao HOM05D005510 ORTHO05D006750 1.6e-127 460.3 338 67.5
Hma1.2p1_1327F.1_g275900 Hydrangea macrophylla HOM05D005510 ORTHO05D006750 6.1e-127 458.4 308 72.7
Sed0017548 Sechium edule HOM05D005510 ORTHO05D006750 1.2e-119 434.1 315 67.0
AagrBONN_evm.TU.Sc2ySwM_344.4799 Anthoceros agrestis HOM05D005510 ORTHO05D000746 1.4e-115 420.6 395 53.7
CiPaw.09G161300 Carya illinoinensis HOM05D005510 ORTHO05D006750 1.0e-113 414.5 282 70.9
CAN.G248.49 Capsicum annuum HOM05D005510 ORTHO05D006750 3.3e-112 409.5 351 63.8
Mapoly0011s0121 Marchantia polymorpha HOM05D005510 ORTHO05D006750 3.4e-109 399.4 363 53.2
SMO116G0325 Selaginella moellendorffii HOM05D005510 ORTHO05D006750 1.4e-107 394.0 416 50.0
Zm00001eb150290 Zea mays HOM05D005510 ORTHO05D006750 3.5e-106 389.4 288 63.2
C08p32070 Brassica napus HOM05D005510 ORTHO05D006750 2.3e-105 386.7 315 61.9
MBI13_g43864_MAGBIO Magnolia biondii HOM05D005510 ORTHO05D006750 8.9e-102 374.8 344 57.0
A09p49680 Brassica napus HOM05D005510 ORTHO05D006750 1.4e-99 367.5 300 61.7
arahy.Tifrunner.gnm1.ann1.MR8QPJ Arachis hypogaea HOM05D005510 ORTHO05D006750 2.4e-99 366.7 386 52.3
BraA09t40424Z Brassica rapa HOM05D005510 ORTHO05D006750 7.0e-99 365.2 283 63.6
CSS0041188 Camellia sinensis var. sinensis HOM05D005510 ORTHO05D006750 2.0e-93 347.1 240 69.6
TPR.G23234 Trifolium pratense HOM05D005510 ORTHO05D006750 2.7e-90 336.7 213 72.8
Cre13.g574150 Chlamydomonas reinhardtii HOM05D005510 ORTHO05D006750 3.9e-89 332.8 443 43.1
THA.LOC104803303 Tarenaya hassleriana HOM05D005510 ORTHO05D006750 7.3e-88 328.6 241 65.1
CARHR166990 Cardamine hirsuta HOM05D005510 ORTHO05D006750 6.4e-84 315.5 237 65.0
PGSC0003DMG400012053 Solanum tuberosum HOM05D005510 ORTHO05D006750 5.4e-75 285.8 145 94.5
THA.LOC104803301 Tarenaya hassleriana HOM05D005510 ORTHO05D006750 1.1e-72 278.1 190 68.9
MSTRG.19825 Avicennia marina HOM05D005510 ORTHO05D006750 6.7e-65 252.3 160 75.6
Cfa027308 Carpinus fangiana HOM05D005510 ORTHO05D006750 2.5e-56 223.8 413 36.1
TPR.G942 Trifolium pratense HOM05D005510 ORTHO05D006750 1.6e-55 221.1 149 70.5
Manes.07G109500 Manihot esculenta HOM05D005510 ORTHO05D006750 4.5e-53 213.0 167 64.1
Manes.05G099066 Manihot esculenta HOM05D005510 ORTHO05D006750 4.2e-51 206.5 168 62.5
SEGI_04748 Sequoiadendron giganteum HOM05D005510 ORTHO05D006750 6.1e-50 202.6 170 61.2
Zm00001eb093570 Zea mays HOM05D005510 ORTHO05D006750 7.9e-50 202.2 248 43.5
CAN.G636.4 Capsicum annuum HOM05D005510 ORTHO05D006750 1.4e-46 191.4 235 52.3
SalBow7G3561 Salvia bowleyana HOM05D005510 ORTHO05D006750 5.3e-38 162.9 120 69.2
CAN.G524.4 Capsicum annuum HOM05D005510 ORTHO05D006750 1.0e-36 158.7 91 84.6
AagrBONN_evm.TU.Sc2ySwM_344.567 Anthoceros agrestis HOM05D005510 ORTHO05D006750 8.5e-36 155.6 423 30.7
CBR_g4412 Chara braunii HOM05D005510 ORTHO05D006750 2.7e-34 150.6 429 29.1
SMO356G0394 Selaginella moellendorffii HOM05D005510 ORTHO05D006750 2.7e-34 150.6 422 29.6
Mapoly0085s0100 Marchantia polymorpha HOM05D005510 ORTHO05D006750 6.7e-33 146.0 425 29.2
Pp3c25_9310 Physcomitrium patens HOM05D005510 ORTHO05D006750 1.7e-31 141.4 438 29.5
CAN.G641.39 Capsicum annuum HOM05D005510 ORTHO05D006750 2.4e-30 137.5 96 77.1
Zm00001eb341880 Zea mays HOM05D005510 ORTHO05D006750 4.2e-27 126.7 113 51.3
MD14G1091800 Malus domestica HOM05D005510 ORTHO05D006750 5.7e-24 116.3 73 71.2
SEGI_32136 Sequoiadendron giganteum HOM05D005510 ORTHO05D006750 1.3e-23 115.2 81 67.9
PRCOL_00000521 Prasinoderma coloniale HOM05D005510 ORTHO05D006750 6.3e-23 112.8 264 33.3
CAN.G524.9 Capsicum annuum HOM05D005510 ORTHO05D020273 2.9e-20 104.0 53 90.6
MD14G1091600 Malus domestica HOM05D005510 ORTHO05D006750 5.0e-20 103.2 86 61.6
AUR62018455 Chenopodium quinoa HOM05D005510 ORTHO05D006750 8.5e-20 102.4 97 59.8
CDE09G0372 Ceratophyllum demersum HOM05D005510 ORTHO05D006750 2.4e-14 84.3 156 38.5
MD14G1091700 Malus domestica HOM05D005510 ORTHO05D006750 2.4e-06 57.8 37 75.7


User provided reference genes

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