Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc10g079260.2 Solanum lycopersicum HOM05D004475 ORTHO05D005235 7.5e-39 163.3 79 100.0
Sopen10g029910 Solanum pennellii HOM05D004475 ORTHO05D005235 7.5e-39 163.3 79 100.0
PGSC0003DMG400008171 Solanum tuberosum HOM05D004475 ORTHO05D005235 4.9e-38 160.6 79 97.5
CAN.G641.30 Capsicum annuum HOM05D004475 ORTHO05D005235 2.7e-36 154.8 79 93.7
Nitab4.5_0010656g0010 Nicotiana tabacum HOM05D004475 ORTHO05D005235 8.6e-35 149.8 75 96.0
Peaxi162Scf00002g00359 Petunia axillaris HOM05D004475 ORTHO05D005235 4.3e-34 147.5 76 90.8
Nitab4.5_0000082g0290 Nicotiana tabacum HOM05D004475 ORTHO05D005235 1.1e-32 142.9 75 93.3
Peaxi162Scf00130g00932 Petunia axillaris HOM05D004475 ORTHO05D005235 2.0e-31 138.7 77 81.8
Solyc04g016440.4 Solanum lycopersicum HOM05D004475 ORTHO05D005235 6.4e-30 133.7 76 80.3
Sopen04g008540 Solanum pennellii HOM05D004475 ORTHO05D005235 6.4e-30 133.7 76 80.3
CSS0035330 Camellia sinensis var. sinensis HOM05D004475 ORTHO05D005235 1.4e-29 132.5 73 80.8
CSS0043412 Camellia sinensis var. sinensis HOM05D004475 ORTHO05D005235 1.4e-29 132.5 73 80.8
Nitab4.5_0000826g0170 Nicotiana tabacum HOM05D004475 ORTHO05D005235 1.4e-29 132.5 71 84.5
PGSC0003DMG400012719 Solanum tuberosum HOM05D004475 ORTHO05D005235 1.9e-29 132.1 76 78.9
CAN.G1237.9 Capsicum annuum HOM05D004475 ORTHO05D005235 3.2e-29 131.3 73 80.8
Prupe.2G152500 Prunus persica HOM05D004475 ORTHO05D005235 2.7e-28 128.3 77 75.3
QL02p076199 Quercus lobata HOM05D004475 ORTHO05D005235 3.5e-28 127.9 77 74.0
QL07p004070 Quercus lobata HOM05D004475 ORTHO05D005235 3.5e-28 127.9 77 74.0
Lj1A1123G21 Lonicera japonica HOM05D004475 ORTHO05D005235 4.6e-28 127.5 75 74.7
GSVIVG01005040001 Vitis vinifera HOM05D004475 ORTHO05D005235 4.6e-28 127.5 73 76.7
FAN10G0874 Fragaria x ananassa HOM05D004475 ORTHO05D005235 6.0e-28 127.1 77 71.4
RcHm_v2.0_Chr1g0351831 Rosa chinensis HOM05D004475 ORTHO05D005235 6.0e-28 127.1 77 71.4
vmacro21959 Vaccinium macrocarpon HOM05D004475 ORTHO05D005235 6.0e-28 127.1 75 74.7
Rhsim03G0029800 Rhododendron simsii HOM05D004475 ORTHO05D005235 7.8e-28 126.7 75 76.0
Cfa016767 Carpinus fangiana HOM05D004475 ORTHO05D005235 1.0e-27 126.3 77 74.0
Haze_19778 Corylus avellana HOM05D004475 ORTHO05D005235 1.0e-27 126.3 77 74.0
QL07p004140 Quercus lobata HOM05D004475 ORTHO05D005235 1.0e-27 126.3 77 72.7
FAN06G2315 Fragaria x ananassa HOM05D004475 ORTHO05D005235 1.7e-27 125.6 77 70.1
FAN06G2651 Fragaria x ananassa HOM05D004475 ORTHO05D005235 1.7e-27 125.6 77 70.1
THA.LOC104824427 Tarenaya hassleriana HOM05D004475 ORTHO05D005235 2.3e-27 125.2 79 69.6
BraA07t29998Z Brassica rapa HOM05D004475 ORTHO05D005235 3.0e-27 124.8 79 68.4
Thecc.04G085100 Theobroma cacao HOM05D004475 ORTHO05D005235 3.0e-27 124.8 75 73.3
COL.COLO4_31106 Corchorus olitorius HOM05D004475 ORTHO05D005235 3.9e-27 124.4 75 72.0
BcaC08g44832 Brassica carinata HOM05D004475 ORTHO05D005235 5.1e-27 124.0 79 68.4
C06p24380 Brassica napus HOM05D004475 ORTHO05D005235 5.1e-27 124.0 79 68.4
Sp5g05320 Schrenkiella parvula HOM05D004475 ORTHO05D005235 5.1e-27 124.0 79 68.4
FvH4_7g12800 Fragaria vesca HOM05D004475 ORTHO05D005235 6.6e-27 123.6 77 68.8
BcaC07g40061 Brassica carinata HOM05D004475 ORTHO05D005235 8.7e-27 123.2 79 67.1
A09p50200 Brassica napus HOM05D004475 ORTHO05D005235 8.7e-27 123.2 81 69.1
BraA09t40470Z Brassica rapa HOM05D004475 ORTHO05D005235 8.7e-27 123.2 81 69.1
Migut.J01712 Erythranthe guttata HOM05D004475 ORTHO05D005235 8.7e-27 123.2 75 74.7
Potri.003G094300 Populus trichocarpa HOM05D004475 ORTHO05D005235 8.7e-27 123.2 75 72.0
C08p32680 Brassica napus HOM05D004475 ORTHO05D005235 1.1e-26 122.9 81 69.1
Thhalv10006224m.g Eutrema salsugineum HOM05D004475 ORTHO05D005235 1.1e-26 122.9 79 68.4
A07p23330 Brassica napus HOM05D004475 ORTHO05D005235 1.5e-26 122.5 79 67.1
CANSAT80G2630 Cannabis sativa HOM05D004475 ORTHO05D005235 1.5e-26 122.5 75 73.3
Lj2A388T27 Lonicera japonica HOM05D004475 ORTHO05D005235 1.5e-26 122.5 73 74.0
FAN10G1216 Fragaria x ananassa HOM05D004764 ORTHO05D005580 1.9e-26 122.1 76 68.4
Oeu008174.1 Olea europaea HOM05D004475 ORTHO05D005235 1.9e-26 122.1 75 73.3
Aa31LG10G12150 Aethionema arabicum HOM05D004475 ORTHO05D005235 3.3e-26 121.3 77 68.8
Actinidia38137 Actinidia chinensis HOM05D004475 ORTHO05D005235 4.3e-26 120.9 73 74.0
AT3G57280 Arabidopsis thaliana HOM05D004475 ORTHO05D005235 4.3e-26 120.9 80 70.0
Manes.09G010600 Manihot esculenta HOM05D004475 ORTHO05D005235 4.3e-26 120.9 74 73.0
FAN01G1920 Fragaria x ananassa HOM05D004475 ORTHO05D005235 5.6e-26 120.6 77 68.8
BolC6t37586H Brassica oleracea HOM05D004475 ORTHO05D005235 7.3e-26 120.2 79 65.8
CiPaw.10G036200 Carya illinoinensis HOM05D004475 ORTHO05D005235 7.3e-26 120.2 77 68.8
Sabra03G0063400 Salix brachista HOM05D004475 ORTHO05D005235 7.3e-26 120.2 78 67.9
Carub.0001s3807 Capsella rubella HOM05D004475 ORTHO05D005235 9.6e-26 119.8 79 65.8
Dinv18682 Davidia involucrata HOM05D004475 ORTHO05D005235 1.2e-25 119.4 75 72.0
Eucgr.A02304 Eucalyptus grandis HOM05D004475 ORTHO05D005235 1.2e-25 119.4 73 74.0
MBI07_g06431_MAGBIO Magnolia biondii HOM05D003129 ORTHO05D000022 1.2e-25 119.4 74 73.0
BcaC02g09925 Brassica carinata HOM05D004475 ORTHO05D005235 2.8e-25 118.2 79 65.8
BcaC02g09926 Brassica carinata HOM05D004475 ORTHO05D005235 2.8e-25 118.2 79 65.8
C04p35100 Brassica napus HOM05D004475 ORTHO05D005235 2.8e-25 118.2 79 65.8
BolC4t25066H Brassica oleracea HOM05D004475 ORTHO05D005235 2.8e-25 118.2 79 65.8
AL5G38770 Arabidopsis lyrata HOM05D004475 ORTHO05D005235 4.7e-25 117.5 80 66.2
Potri.001G139800 Populus trichocarpa HOM05D004475 ORTHO05D005235 4.7e-25 117.5 73 69.9
Carub.0005s2413 Capsella rubella HOM05D004475 ORTHO05D005235 6.2e-25 117.1 75 66.7
Glyma.19G135000 Glycine max HOM05D004475 ORTHO05D005235 6.2e-25 117.1 77 68.8
Lj1g0003764 Lotus japonicus HOM05D004475 ORTHO05D005235 1.4e-24 115.9 77 67.5
Lalb_Chr01g0017241 Lupinus albus HOM05D004475 ORTHO05D005235 1.4e-24 115.9 75 68.0
MBI05_g34359_MAGBIO Magnolia biondii HOM05D004475 ORTHO05D005235 1.4e-24 115.9 75 69.3
Phvul.001G128700 Phaseolus vulgaris HOM05D004475 ORTHO05D005235 1.4e-24 115.9 77 66.2
CsaV3_4G027790 Cucumis sativus L. HOM05D004475 ORTHO05D005235 1.8e-24 115.5 77 64.9
Glyma.03G133200 Glycine max HOM05D004475 ORTHO05D005235 1.8e-24 115.5 77 67.5
Ca_22428_v3 Cicer arietinum L. HOM05D004475 ORTHO05D005235 2.4e-24 115.2 77 67.5
arahy.Tifrunner.gnm1.ann1.Y19QZX Arachis hypogaea HOM05D004475 ORTHO05D005235 5.2e-24 114.0 77 66.2
Aqoxy5G02252 Aquilegia oxysepala HOM05D004475 ORTHO05D005235 6.9e-24 113.6 75 65.3
arahy.Tifrunner.gnm1.ann1.AU6CR8 Arachis hypogaea HOM05D004475 ORTHO05D005235 6.9e-24 113.6 77 66.2
DCAR_013617 Daucus carota HOM05D004475 ORTHO05D005235 6.9e-24 113.6 73 64.4
ClCG04G003840 Citrullus lanatus HOM05D004475 ORTHO05D005235 9.0e-24 113.2 77 63.6
MELO3C026314.2 Cucumis melo HOM05D004475 ORTHO05D005235 9.0e-24 113.2 77 63.6
Dinv39670 Davidia involucrata HOM05D004475 ORTHO05D005235 9.0e-24 113.2 75 69.3
arahy.Tifrunner.gnm1.ann1.QEH0EE Arachis hypogaea HOM05D004475 ORTHO05D005235 1.2e-23 112.8 77 64.9
Ah.04g151370 Amaranthus hybridus HOM05D004475 ORTHO05D005235 2.0e-23 112.1 77 62.3
Aqoxy1G03236 Aquilegia oxysepala HOM05D004475 ORTHO05D005235 2.0e-23 112.1 70 70.0
PSO541G2072 Papaver somniferum HOM05D004475 ORTHO05D005235 4.4e-23 110.9 77 63.6
CARHR167480 Cardamine hirsuta HOM05D004475 ORTHO05D005235 7.6e-23 110.2 79 63.3
Medtr7g090890 Medicago truncatula HOM05D004475 ORTHO05D005235 9.9e-23 109.8 75 66.7
unitig_26.g9059 Utricularia gibba HOM05D004475 ORTHO05D005235 1.7e-22 109.0 75 66.7
MSTRG.6404 Avicennia marina HOM05D004475 ORTHO05D005235 2.2e-22 108.6 75 66.7
BolC8t50880H Brassica oleracea HOM05D004475 ORTHO05D005235 2.2e-22 108.6 103 53.4
SalBow6G6503 Salvia bowleyana HOM05D004475 ORTHO05D005235 2.2e-22 108.6 75 64.0
SHI12342 Sapria himalayana HOM05D004475 ORTHO05D005235 2.9e-22 108.2 73 61.6
PSO675G0454 Papaver somniferum HOM05D004475 ORTHO05D005235 3.8e-22 107.8 77 63.6
Nitab4.5_0001618g0210 Nicotiana tabacum HOM05D004475 ORTHO05D005235 6.4e-22 107.1 59 84.7
SalBow1G0186 Salvia bowleyana HOM05D004475 ORTHO05D005235 6.4e-22 107.1 75 62.7
ECA240G3656 Erigeron canadensis HOM05D004475 ORTHO05D005235 8.4e-22 106.7 75 61.3
Lsat_1_v5_gn_5_161180 Lactuca sativa HOM05D004475 ORTHO05D005235 8.4e-22 106.7 72 62.5
HanXRQChr01g0008311 Helianthus annuus HOM05D004475 ORTHO05D005235 1.1e-21 106.3 75 61.3
HanXRQChr08g0209421 Helianthus annuus HOM05D004475 ORTHO05D005235 1.1e-21 106.3 75 61.3
ATR0749G001 Amborella trichopoda HOM05D004475 ORTHO05D005235 1.4e-21 105.9 77 61.0
Cc06_g18210 Coffea canephora HOM05D004475 ORTHO05D005235 7.1e-21 103.6 65 72.3
HanXRQChr10g0298201 Helianthus annuus HOM05D004475 ORTHO05D005235 9.3e-21 103.2 75 64.0
TAR369G1128 Trochodendron aralioides HOM05D004475 ORTHO05D005235 1.6e-20 102.4 77 58.4
Atru.chr1.1194 Acer truncatum HOM05D004475 ORTHO05D005235 2.7e-20 101.7 77 59.7
Hund24650 Selenicereus undatus HOM05D004475 ORTHO05D005235 4.6e-20 100.9 77 62.3
SGA_v2.0_scaffold69G23128 Striga asiatica HOM05D004475 ORTHO05D005235 1.0e-19 99.8 100 54.0
TPR.G32720 Trifolium pratense HOM05D004475 ORTHO05D005235 2.3e-19 98.6 69 62.3
Nn7g36424 Nelumbo nucifera HOM05D004475 ORTHO05D005235 8.7e-19 96.7 75 64.0
CSS0030492 Camellia sinensis var. sinensis HOM05D004475 ORTHO05D005235 1.5e-18 95.9 55 78.2
BraA04t16044Z Brassica rapa HOM05D004475 ORTHO05D005235 3.3e-18 94.7 90 56.7
Ciclev10005778m.g Citrus clementina HOM05D004475 ORTHO05D005235 7.3e-18 93.6 59 71.2
AUR62024523 Chenopodium quinoa HOM05D004475 ORTHO05D005235 1.3e-17 92.8 77 55.8
AUR62026115 Chenopodium quinoa HOM05D004475 ORTHO05D005235 1.6e-17 92.4 77 55.8
Zm00001eb424650 Zea mays HOM05D004475 ORTHO05D005235 2.1e-17 92.0 72 55.6
Psat3g074880 Pisum sativum HOM05D004475 ORTHO05D005235 2.8e-17 91.7 68 63.2
Sabra01G0108900 Salix brachista HOM05D004475 ORTHO05D005235 2.8e-17 91.7 92 52.2
MSTRG.10806 Avicennia marina HOM05D004475 ORTHO05D005235 1.4e-16 89.4 62 67.7
PGR004G0119 Punica granatum HOM05D004475 ORTHO05D005235 4.0e-16 87.8 73 53.4
Cpa.g.sc182.27 Carica papaya HOM05D004475 ORTHO05D005235 5.3e-16 87.4 75 56.0
ECA247G2236 Erigeron canadensis HOM05D004475 ORTHO05D005235 1.5e-15 85.9 58 67.2
A04p03220 Brassica napus HOM05D004475 ORTHO05D005235 2.6e-15 85.1 79 55.7
AagrBONN_evm.TU.Sc2ySwM_362.797 Anthoceros agrestis HOM05D004956 ORTHO05D006284 4.5e-15 84.3 69 53.6
Oeu023134.1 Olea europaea HOM05D004475 ORTHO05D005235 7.6e-15 83.6 54 70.4
Os04g0470300 Oryza sativa ssp. japonica HOM05D004475 ORTHO05D005235 7.6e-15 83.6 74 50.0
VMungo1383G1580 Vigna mungo HOM05D004475 ORTHO05D005235 9.9e-15 83.2 77 51.9
EL10Ac3g07152 Beta vulgaris HOM05D004475 ORTHO05D005235 2.2e-14 82.0 54 66.7
Os06g0301100 Oryza sativa ssp. japonica HOM05D004475 ORTHO05D005235 3.8e-14 81.3 61 57.4
TWI53G0253 Tripterygium wilfordii HOM05D004475 ORTHO05D005235 3.8e-14 81.3 77 51.9
CDE02G2660 Ceratophyllum demersum HOM05D004475 ORTHO05D005235 4.9e-14 80.9 52 73.1
TWI74G0419 Tripterygium wilfordii HOM05D004475 ORTHO05D005235 4.9e-14 80.9 77 51.9
Migut.K00106 Erythranthe guttata HOM05D004475 ORTHO05D005235 6.4e-14 80.5 75 54.7
HPP92_017986 Vanilla planifolia HOM05D004475 ORTHO05D005235 2.4e-13 78.6 63 55.6
Pp3c21_18160 Physcomitrium patens HOM05D004956 ORTHO05D005235 7.1e-13 77.0 75 45.3
HPP92_026704 Vanilla planifolia HOM05D004475 ORTHO05D005235 1.2e-12 76.3 62 54.8
Gohir.A02G105902 Gossypium hirsutum HOM05D004475 ORTHO05D005235 2.1e-12 75.5 50 68.0
SEGI_26247 Sequoiadendron giganteum HOM05D004475 ORTHO05D005235 2.1e-12 75.5 73 50.7
Mapoly0006s0095 Marchantia polymorpha HOM05D004956 ORTHO05D006284 2.7e-12 75.1 68 50.0
Pp3c18_6510 Physcomitrium patens HOM05D004956 ORTHO05D006284 2.3e-11 72.0 75 41.3
TWI77G0736 Tripterygium wilfordii HOM05D004475 ORTHO05D005235 3.0e-11 71.6 82 46.3
Duzib093G1491 Durio zibethinus HOM05D004475 ORTHO05D005235 3.9e-11 71.2 47 66.0
Duzib128G1477 Durio zibethinus HOM05D004475 ORTHO05D005235 5.1e-11 70.9 47 61.7
SGA_v2.0_scaffold105G30365 Striga asiatica HOM05D004475 ORTHO05D005235 1.5e-10 69.3 47 70.2
Sed0026196 Sechium edule HOM05D004475 ORTHO05D005235 2.5e-10 68.6 51 54.9
CDE08G0915 Ceratophyllum demersum HOM05D004475 ORTHO05D005235 3.3e-10 68.2 41 73.2
arahy.Tifrunner.gnm1.ann1.65IVB9 Arachis hypogaea HOM05D004475 ORTHO05D005235 6.2e-09 63.9 57 56.1
CBR_g47126 Chara braunii HOM05D004956 ORTHO05D006284 2.0e-07 58.9 68 36.8
Zm00001eb301150 Zea mays HOM05D004475 ORTHO05D005235 7.6e-07 57.0 60 46.7
Carub.0003s2047 Capsella rubella HOM05D004888 ORTHO05D005792 1.3e-06 56.2 69 43.5
AL3G34290 Arabidopsis lyrata HOM05D004888 ORTHO05D005792 3.8e-06 54.7 69 43.5
AT3G20510 Arabidopsis thaliana HOM05D004888 ORTHO05D005792 3.8e-06 54.7 69 43.5
CiPaw.12G128800 Carya illinoinensis HOM05D004888 ORTHO05D005792 3.8e-06 54.7 69 37.7
Prupe.4G211200 Prunus persica HOM05D004888 ORTHO05D005792 3.8e-06 54.7 71 40.8
Zm00001eb317650 Zea mays HOM05D004475 ORTHO05D005235 3.8e-06 54.7 47 51.1
Zm00001eb379540 Zea mays HOM05D004475 ORTHO05D005235 3.8e-06 54.7 47 51.1
MD03G1204200 Malus domestica HOM05D004888 ORTHO05D005792 4.9e-06 54.3 71 40.8
Aa31LG8G7320 Aethionema arabicum HOM05D004888 ORTHO05D005792 6.4e-06 53.9 69 40.6
SMO270G0016 Selaginella moellendorffii HOM05D004888 ORTHO05D005792 8.4e-06 53.5 73 38.4


User provided reference genes

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