Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc10g079000.1 Solanum lycopersicum HOM05D005910 ORTHO05D007088 1.5e-101 372.9 195 100.0
Sopen10g029620 Solanum pennellii HOM05D005910 ORTHO05D007088 1.5e-101 372.9 195 100.0
PGSC0003DMG400011451 Solanum tuberosum HOM05D005910 ORTHO05D007088 1.5e-101 372.9 195 100.0
CAN.G960.19 Capsicum annuum HOM05D005910 ORTHO05D007088 4.7e-90 334.7 193 90.7
DCAR_019862 Daucus carota HOM05D005910 ORTHO05D007088 1.7e-84 316.2 193 84.5
Oeu057587.1 Olea europaea HOM05D005910 ORTHO05D007088 2.2e-84 315.8 189 85.7
Dinv16345 Davidia involucrata HOM05D005910 ORTHO05D007088 6.5e-84 314.3 193 84.5
Peaxi162Scf00463g00044 Petunia axillaris HOM05D005910 ORTHO05D007088 7.2e-83 310.8 193 83.9
Cc06_g15530 Coffea canephora HOM05D005910 ORTHO05D007088 3.6e-82 308.5 193 85.5
CSS0007798 Camellia sinensis var. sinensis HOM05D005910 ORTHO05D007088 2.3e-81 305.8 193 82.4
Actinidia17287 Actinidia chinensis HOM05D005910 ORTHO05D007088 5.2e-81 304.7 195 82.1
Hma1.2p1_0124F.1_g058350 Hydrangea macrophylla HOM05D005910 ORTHO05D007088 5.2e-81 304.7 193 82.9
Actinidia38597 Actinidia chinensis HOM05D005910 ORTHO05D007088 1.2e-80 303.5 195 81.5
Nitab4.5_0000009g0230 Nicotiana tabacum HOM05D005910 ORTHO05D007088 1.5e-80 303.1 193 80.8
Nitab4.5_0009361g0020 Nicotiana tabacum HOM05D005910 ORTHO05D007088 1.5e-80 303.1 193 80.8
Manes.09G037701 Manihot esculenta HOM05D005910 ORTHO05D007088 3.4e-80 302.0 195 82.6
SGA_v2.0_scaffold69G23042 Striga asiatica HOM05D005910 ORTHO05D007088 3.4e-80 302.0 196 80.1
Gohir.D09G124900 Gossypium hirsutum HOM05D005910 ORTHO05D007088 5.7e-80 301.2 195 81.5
Gorai.006G143800 Gossypium raimondii HOM05D005910 ORTHO05D007088 5.7e-80 301.2 195 81.5
FvH4_6g21840 Fragaria vesca HOM05D005910 ORTHO05D007088 1.3e-79 300.1 195 82.6
TWI77G0716 Tripterygium wilfordii HOM05D005910 ORTHO05D007088 1.3e-79 300.1 195 80.5
BraA01t04144Z Brassica rapa HOM05D005910 ORTHO05D007088 1.7e-79 299.7 189 81.5
MSTRG.19925 Avicennia marina HOM05D005910 ORTHO05D007088 2.2e-79 299.3 188 82.4
BolC1t05270H Brassica oleracea HOM05D005910 ORTHO05D007088 2.2e-79 299.3 189 81.5
Migut.J01866 Erythranthe guttata HOM05D005910 ORTHO05D007088 2.2e-79 299.3 196 79.1
Gohir.A09G128900 Gossypium hirsutum HOM05D005910 ORTHO05D007088 2.2e-79 299.3 195 81.0
Thhalv10022159m.g Eutrema salsugineum HOM05D005910 ORTHO05D007088 2.8e-79 298.9 193 80.3
FAN05G0623 Fragaria x ananassa HOM05D005910 ORTHO05D007088 2.8e-79 298.9 195 82.1
FAN14G5103 Fragaria x ananassa HOM05D005910 ORTHO05D007088 2.8e-79 298.9 195 82.1
BcaC09g48209 Brassica carinata HOM05D005910 ORTHO05D007088 3.7e-79 298.5 189 81.5
MD12G1054500 Malus domestica HOM05D005910 ORTHO05D007088 3.7e-79 298.5 195 81.0
Thecc.05G175100 Theobroma cacao HOM05D005910 ORTHO05D007088 3.7e-79 298.5 195 80.5
CARHR206550 Cardamine hirsuta HOM05D005910 ORTHO05D007088 1.1e-78 297.0 194 80.9
FAN02G0902 Fragaria x ananassa HOM05D005910 ORTHO05D007088 1.1e-78 297.0 195 81.5
Lsat_1_v5_gn_2_56160 Lactuca sativa HOM05D005910 ORTHO05D007088 1.1e-78 297.0 193 81.9
RcHm_v2.0_Chr3g0479191 Rosa chinensis HOM05D005910 ORTHO05D007088 1.1e-78 297.0 195 81.5
COL.COLO4_29362 Corchorus olitorius HOM05D005910 ORTHO05D007088 1.4e-78 296.6 195 79.5
AT5G06660 Arabidopsis thaliana HOM05D005910 ORTHO05D007088 1.8e-78 296.2 194 80.4
AL6G16750 Arabidopsis lyrata HOM05D005910 ORTHO05D007088 2.4e-78 295.8 194 80.4
CANSAT64G0849 Cannabis sativa HOM05D005910 ORTHO05D007088 2.4e-78 295.8 195 81.5
CiPaw.10G025100 Carya illinoinensis HOM05D005910 ORTHO05D007088 2.4e-78 295.8 195 81.5
Sp3g10260 Schrenkiella parvula HOM05D005910 ORTHO05D007088 3.1e-78 295.4 189 81.0
THA.LOC104799285 Tarenaya hassleriana HOM05D005910 ORTHO05D007088 3.1e-78 295.4 195 80.0
GSVIVG01033465001 Vitis vinifera HOM05D005910 ORTHO05D007088 3.1e-78 295.4 195 79.5
AL3G23640 Arabidopsis lyrata HOM05D005910 ORTHO05D007088 4.1e-78 295.0 190 81.6
ClCG10G017690 Citrullus lanatus HOM05D005910 ORTHO05D007088 4.1e-78 295.0 195 80.5
Sp6g36210 Schrenkiella parvula HOM05D005910 ORTHO05D007088 4.1e-78 295.0 194 79.9
Rhsim04G0093900 Rhododendron simsii HOM05D005910 ORTHO05D007088 9.1e-78 293.9 196 80.1
AT3G12030 Arabidopsis thaliana HOM05D005910 ORTHO05D007088 1.2e-77 293.5 190 81.1
Carub.0003s1137 Capsella rubella HOM05D005910 ORTHO05D007088 1.2e-77 293.5 190 81.1
Atru.chr8.1156 Acer truncatum HOM05D005910 ORTHO05D007088 1.6e-77 293.1 196 80.1
Aa31LG3G5420 Aethionema arabicum HOM05D005910 ORTHO05D007088 1.6e-77 293.1 190 81.1
AUR62015329 Chenopodium quinoa HOM05D005910 ORTHO05D007088 1.6e-77 293.1 193 78.2
Prupe.7G082200 Prunus persica HOM05D005910 ORTHO05D007088 1.6e-77 293.1 195 80.5
Rhsim04G0095300 Rhododendron simsii HOM05D005910 ORTHO05D007088 1.6e-77 293.1 196 80.1
CARHR086590 Cardamine hirsuta HOM05D005910 ORTHO05D007088 2.7e-77 292.4 190 81.1
Duzib106G1486 Durio zibethinus HOM05D005910 ORTHO05D007088 2.7e-77 292.4 195 79.0
Sed0016712 Sechium edule HOM05D005910 ORTHO05D007088 3.5e-77 292.0 196 79.1
Thhalv10016091m.g Eutrema salsugineum HOM05D005910 ORTHO05D007088 4.5e-77 291.6 190 81.1
PGR142G2565 Punica granatum HOM05D005910 ORTHO05D007088 4.5e-77 291.6 195 79.5
Carub.0006s0554 Capsella rubella HOM05D005910 ORTHO05D007088 5.9e-77 291.2 194 78.9
Cpa.g.sc85.46 Carica papaya HOM05D005910 ORTHO05D007088 5.9e-77 291.2 194 78.9
CiPaw.09G028200 Carya illinoinensis HOM05D005910 ORTHO05D007088 5.9e-77 291.2 195 80.0
MELO3C009607.2 Cucumis melo HOM05D005910 ORTHO05D007088 5.9e-77 291.2 195 78.5
BcaB04g21099 Brassica carinata HOM05D005910 ORTHO05D007088 7.7e-77 290.8 191 79.6
AUR62012008 Chenopodium quinoa HOM05D005910 ORTHO05D007088 1.0e-76 290.4 190 78.9
QL07p024560 Quercus lobata HOM05D005910 ORTHO05D007088 1.3e-76 290.0 196 79.6
Psat3g091080 Pisum sativum HOM05D005910 ORTHO05D007088 5.0e-76 288.1 189 82.0
Aqoxy7G00427 Aquilegia oxysepala HOM05D005910 ORTHO05D007088 6.5e-76 287.7 191 81.7
EL10Ac3g06882 Beta vulgaris HOM05D005910 ORTHO05D007088 8.6e-76 287.3 193 76.7
unitig_26.g10040 Utricularia gibba HOM05D005910 ORTHO05D007088 8.6e-76 287.3 197 75.6
Ca_08246_v3 Cicer arietinum L. HOM05D005910 ORTHO05D007088 1.1e-75 287.0 189 82.0
Glyma.16G043900 Glycine max HOM05D005910 ORTHO05D007088 1.1e-75 287.0 190 81.1
Lalb_Chr22g0359441 Lupinus albus HOM05D005910 ORTHO05D007088 1.1e-75 287.0 189 82.0
Medtr7g085050 Medicago truncatula HOM05D005910 ORTHO05D007088 1.1e-75 287.0 189 82.0
TPR.G5912 Trifolium pratense HOM05D005910 ORTHO05D007088 1.9e-75 286.2 189 82.0
Manes.08G042400 Manihot esculenta HOM05D005910 ORTHO05D007088 5.5e-75 284.6 195 79.0
Phvul.001G097100 Phaseolus vulgaris HOM05D005910 ORTHO05D007088 5.5e-75 284.6 189 81.0
Sc13g0002410 Simmondsia chinensis HOM05D005910 ORTHO05D007088 5.5e-75 284.6 192 78.1
Lj1g0011929 Lotus japonicus HOM05D005910 ORTHO05D007088 7.2e-75 284.3 189 81.5
VMungo1383G3424 Vigna mungo HOM05D005910 ORTHO05D007088 7.2e-75 284.3 189 81.0
Lalb_Chr14g0364291 Lupinus albus HOM05D005910 ORTHO05D007088 9.5e-75 283.9 189 81.0
PSO478G2464 Papaver somniferum HOM05D005910 ORTHO05D007088 9.5e-75 283.9 193 79.3
Glyma.19G108300 Glycine max HOM05D005910 ORTHO05D007088 2.1e-74 282.7 189 80.4
TAR623G1561 Trochodendron aralioides HOM05D005910 ORTHO05D007088 2.0e-72 276.2 192 77.1
ECA238G3575 Erigeron canadensis HOM05D005910 ORTHO05D007088 5.7e-72 274.6 196 76.5
Haze_20022 Corylus avellana HOM05D005910 ORTHO05D007088 1.1e-70 270.4 195 76.4
Haze_20025 Corylus avellana HOM05D005910 ORTHO05D007088 1.1e-70 270.4 195 76.4
HanXRQChr14g0438251 Helianthus annuus HOM05D005910 ORTHO05D007088 1.4e-70 270.0 190 77.9
TAR369G0766 Trochodendron aralioides HOM05D005910 ORTHO05D007088 2.4e-70 269.2 192 75.0
Potri.016G060300 Populus trichocarpa HOM05D005910 ORTHO05D007088 7.0e-70 267.7 191 76.4
CsaV3_3G038630 Cucumis sativus L. HOM05D005910 ORTHO05D007088 1.6e-69 266.5 183 77.6
vmacro22120 Vaccinium macrocarpon HOM05D005910 ORTHO05D007088 3.5e-69 265.4 174 81.6
Lsat_1_v5_gn_6_36581 Lactuca sativa HOM05D005910 ORTHO05D007088 1.9e-67 259.6 179 78.2
Sed0026900 Sechium edule HOM05D005910 ORTHO05D007088 3.3e-67 258.8 195 72.3
HPP92_021275 Vanilla planifolia HOM05D005910 ORTHO05D007088 3.3e-67 258.8 197 69.5
HanXRQChr03g0075461 Helianthus annuus HOM05D005910 ORTHO05D007088 7.3e-67 257.7 193 72.5
Cfa020141 Carpinus fangiana HOM05D005910 ORTHO05D007088 1.6e-66 256.5 195 72.8
Pp3c21_11350 Physcomitrium patens HOM05D005910 ORTHO05D007088 2.1e-66 256.1 183 71.0
ATR0598G129 Amborella trichopoda HOM05D005910 ORTHO05D007088 4.0e-65 251.9 188 70.7
Mapoly0107s0023 Marchantia polymorpha HOM05D005910 ORTHO05D007088 4.0e-65 251.9 185 70.8
SHI31753 Sapria himalayana HOM05D005910 ORTHO05D007088 6.4e-63 244.6 182 72.5
AagrBONN_evm.TU.Sc2ySwM_117.1513 Anthoceros agrestis HOM05D005910 ORTHO05D007088 7.0e-62 241.1 190 66.8
Zm00001eb215980 Zea mays HOM05D005910 ORTHO05D007088 6.6e-60 234.6 201 62.7
Zm00001eb055560 Zea mays HOM05D005910 ORTHO05D007088 1.9e-59 233.0 199 62.8
Lj1P1133T16 Lonicera japonica HOM05D005910 ORTHO05D007088 4.7e-58 228.4 136 84.6
Os03g0721400 Oryza sativa ssp. japonica HOM05D005910 ORTHO05D007088 4.7e-58 228.4 212 59.9
SMO367G0437 Selaginella moellendorffii HOM05D005910 ORTHO05D007088 3.4e-56 222.2 186 64.5
Ciclev10013918m.g Citrus clementina HOM05D005910 ORTHO05D007088 6.4e-55 218.0 137 83.9
Dinv24042 Davidia involucrata HOM05D005910 ORTHO05D007088 6.4e-55 218.0 195 65.1
CBR_g49549 Chara braunii HOM05D005910 ORTHO05D007088 1.1e-54 217.2 185 58.9
CSS0031188 Camellia sinensis var. sinensis HOM05D005910 ORTHO05D007088 1.0e-52 210.7 192 62.5
Sabra16G0063200 Salix brachista HOM05D005910 ORTHO05D007088 4.3e-51 205.3 137 80.3
SEGI_08450 Sequoiadendron giganteum HOM05D005910 ORTHO05D007088 2.9e-47 192.6 163 66.9
CSS0042896 Camellia sinensis var. sinensis HOM05D005910 ORTHO05D007088 1.4e-46 190.3 193 58.5
CSS0024230 Camellia sinensis var. sinensis HOM05D005910 ORTHO05D007088 6.0e-45 184.9 198 55.6
Actinidia38594 Actinidia chinensis HOM05D005910 ORTHO05D007088 4.7e-42 175.3 128 75.8
DCAR_009688 Daucus carota HOM05D005910 ORTHO05D007088 9.9e-40 167.5 101 78.2
MD14G1053500 Malus domestica HOM05D005910 ORTHO05D007088 2.2e-39 166.4 115 76.5
MD11G1118600 Malus domestica HOM05D005910 ORTHO05D007088 4.9e-39 165.2 122 73.0
Haze_26182 Corylus avellana HOM05D005910 ORTHO05D007088 4.4e-32 142.1 166 45.8
MD03G1239200 Malus domestica HOM05D005910 ORTHO05D007088 1.6e-29 133.7 135 57.8
MD00G1019800 Malus domestica HOM05D005910 ORTHO05D007088 1.1e-27 127.5 104 65.4
QL03p020127 Quercus lobata HOM05D005910 ORTHO05D007088 2.1e-26 123.2 107 64.5
QL07p006238 Quercus lobata HOM05D005910 ORTHO05D007088 3.1e-25 119.4 89 69.7
CDE06G1328 Ceratophyllum demersum HOM05D005910 ORTHO05D007088 8.4e-23 111.3 76 76.3
PRCOL_00005630 Prasinoderma coloniale HOM05D005910 ORTHO05D007088 5.1e-20 102.1 172 35.5
Glyma.07G000600 Glycine max HOM05D005910 ORTHO05D007088 4.8e-18 95.5 61 85.2
AUR62043130 Chenopodium quinoa HOM05D005910 ORTHO05D007088 5.3e-17 92.0 79 65.8
Sabra08G0162900 Salix brachista HOM05D003359 ORTHO05D007088 3.4e-16 89.4 45 91.1
Cre03.g182900 Chlamydomonas reinhardtii HOM05D005910 ORTHO05D007088 1.3e-12 77.4 162 31.5
HanXRQChr13g0398341 Helianthus annuus HOM05D005910 ORTHO05D007088 5.6e-11 72.0 39 82.1
SGA_v2.0_scaffold131G34402 Striga asiatica HOM05D005910 ORTHO05D007088 1.1e-06 57.8 52 65.4
SGA_v2.0_scaffold472G52090 Striga asiatica HOM05D005910 ORTHO05D007088 1.4e-06 57.4 52 65.4


User provided reference genes

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