Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen10g029410 Solanum pennellii HOM05D005586 ORTHO05D007044 0.0e+00 1228.4 636 100.0
Solyc10g078790.1 Solanum lycopersicum HOM05D005586 ORTHO05D007044 0.0e+00 1224.5 636 99.7
PGSC0003DMG400011415 Solanum tuberosum HOM05D005586 ORTHO05D007044 0.0e+00 1213.4 636 98.7
Peaxi162Scf00231g00064 Petunia axillaris HOM05D005586 ORTHO05D007044 0.0e+00 1146.3 638 93.4
CAN.G1161.32 Capsicum annuum HOM05D005586 ORTHO05D007044 0.0e+00 1119.4 643 91.1
Nitab4.5_0000730g0080 Nicotiana tabacum HOM05D005586 ORTHO05D007044 0.0e+00 1109.4 638 90.3
Nitab4.5_0004134g0010 Nicotiana tabacum HOM05D005586 ORTHO05D007044 0.0e+00 1090.1 635 89.3
Nitab4.5_0000455g0040 Nicotiana tabacum HOM05D005586 ORTHO05D007044 0.0e+00 1081.2 627 89.8
Cc06_g13260 Coffea canephora HOM05D005586 ORTHO05D007044 3.8e-282 974.5 645 78.3
MSTRG.6212 Avicennia marina HOM05D005586 ORTHO05D007044 1.0e-271 939.9 645 77.5
DCAR_017968 Daucus carota HOM05D005586 ORTHO05D007044 6.5e-266 920.6 640 74.4
Lj9P685T24 Lonicera japonica HOM05D005586 ORTHO05D007044 1.9e-265 919.1 643 74.0
Oeu025223.1 Olea europaea HOM05D005586 ORTHO05D007044 3.0e-263 911.8 647 74.3
Dinv41251 Davidia involucrata HOM05D005586 ORTHO05D007044 1.4e-260 902.9 633 75.0
Oeu009835.1 Olea europaea HOM05D005586 ORTHO05D007044 7.7e-259 897.1 648 73.3
SGA_v2.0_scaffold17G07909 Striga asiatica HOM05D005586 ORTHO05D007044 1.9e-257 892.5 637 73.5
CSS0030464 Camellia sinensis var. sinensis HOM05D005586 ORTHO05D007044 1.6e-256 889.4 635 73.9
Migut.J01477 Erythranthe guttata HOM05D005586 ORTHO05D007044 2.1e-256 889.0 646 72.0
Lj7P472T26 Lonicera japonica HOM05D005586 ORTHO05D007044 9.7e-254 880.2 645 70.7
ClCG06G013320 Citrullus lanatus HOM05D005586 ORTHO05D007044 6.3e-253 877.5 650 70.5
ECA234G4574 Erigeron canadensis HOM05D005586 ORTHO05D007044 8.2e-253 877.1 641 73.5
MELO3C017465.2 Cucumis melo HOM05D005586 ORTHO05D007044 1.8e-252 875.9 650 70.5
Rhsim07G0149700 Rhododendron simsii HOM05D005586 ORTHO05D007044 2.4e-252 875.5 639 71.8
Dinv25464 Davidia involucrata HOM05D005586 ORTHO05D007044 4.1e-252 874.8 640 72.3
Sed0005590 Sechium edule HOM05D005586 ORTHO05D007044 9.1e-252 873.6 649 70.7
Duzib168G0896 Durio zibethinus HOM05D005586 ORTHO05D007044 7.7e-251 870.5 649 71.8
CsaV3_1G031580 Cucumis sativus L. HOM05D005586 ORTHO05D007044 2.2e-250 869.0 650 70.0
Potri.006G168200 Populus trichocarpa HOM05D005586 ORTHO05D007044 3.8e-250 868.2 660 69.7
COL.COLO4_33680 Corchorus olitorius HOM05D005586 ORTHO05D007044 1.1e-249 866.7 648 71.0
CSS0000496 Camellia sinensis var. sinensis HOM05D005586 ORTHO05D007044 4.2e-249 864.8 635 72.4
TWI60G0698 Tripterygium wilfordii HOM05D005586 ORTHO05D007044 4.7e-248 861.3 656 69.5
Prupe.2G007900 Prunus persica HOM05D005586 ORTHO05D007044 1.0e-247 860.1 656 69.4
Lj4g0013239 Lotus japonicus HOM05D005586 ORTHO05D007044 1.4e-247 859.8 641 70.2
Sabra06G0129800 Salix brachista HOM05D005586 ORTHO05D007044 2.3e-247 859.0 660 68.8
TAR383G0761 Trochodendron aralioides HOM05D005586 ORTHO05D007044 5.2e-247 857.8 645 70.5
Sed0016049 Sechium edule HOM05D005586 ORTHO05D007044 4.4e-246 854.7 652 69.2
Aqoxy7G02326 Aquilegia oxysepala HOM05D005586 ORTHO05D007044 5.7e-246 854.4 643 69.5
RcHm_v2.0_Chr4g0402481 Rosa chinensis HOM05D005586 ORTHO05D007044 1.7e-245 852.8 647 69.6
Gohir.A08G084500 Gossypium hirsutum HOM05D005586 ORTHO05D007044 2.8e-245 852.0 650 69.2
Glyma.20G083600 Glycine max HOM05D005586 ORTHO05D007044 6.3e-245 850.9 641 70.4
Lsat_1_v5_gn_5_84680 Lactuca sativa HOM05D005586 ORTHO05D007044 6.3e-245 850.9 648 70.8
Ca_21173_v3 Cicer arietinum L. HOM05D005586 ORTHO05D007044 8.3e-245 850.5 646 70.0
Ca_21222_v3 Cicer arietinum L. HOM05D005586 ORTHO05D007044 8.3e-245 850.5 646 70.0
Lalb_Chr12g0199381 Lupinus albus HOM05D005586 ORTHO05D007044 3.1e-244 848.6 647 68.9
PSO170G6484 Papaver somniferum HOM05D005586 ORTHO05D007044 3.1e-244 848.6 645 69.3
Gorai.004G099900 Gossypium raimondii HOM05D005586 ORTHO05D007044 7.0e-244 847.4 650 69.2
FAN18G4074 Fragaria x ananassa HOM05D005586 ORTHO05D007044 1.2e-243 846.7 651 68.5
CiPaw.07G192200 Carya illinoinensis HOM05D005586 ORTHO05D007044 1.6e-243 846.3 651 70.0
Glyma.17G063500 Glycine max HOM05D005586 ORTHO05D007044 1.6e-243 846.3 642 69.9
FvH4_5g27790 Fragaria vesca HOM05D005586 ORTHO05D007044 2.7e-243 845.5 651 68.4
CANSAT11G2700 Cannabis sativa HOM05D005586 ORTHO05D007044 4.5e-243 844.7 648 67.7
Atru.chr7.639 Acer truncatum HOM05D005586 ORTHO05D007044 5.9e-243 844.3 651 68.2
Ah.14g083790 Amaranthus hybridus HOM05D005586 ORTHO05D007044 7.7e-243 844.0 650 69.7
arahy.Tifrunner.gnm1.ann1.F5X18S Arachis hypogaea HOM05D005586 ORTHO05D007044 7.7e-243 844.0 646 69.5
FAN08G2362 Fragaria x ananassa HOM05D005586 ORTHO05D007044 7.7e-243 844.0 649 68.6
Hma1.2p1_1025F.1_g249260 Hydrangea macrophylla HOM05D005586 ORTHO05D007044 2.9e-242 842.0 600 73.7
PSO063G4043 Papaver somniferum HOM05D005586 ORTHO05D007044 8.5e-242 840.5 645 68.2
TAR626G0800 Trochodendron aralioides HOM05D005586 ORTHO05D007044 5.5e-241 837.8 645 68.7
Medtr4g128210 Medicago truncatula HOM05D005586 ORTHO05D007044 1.2e-240 836.6 644 68.9
PGR102G3328 Punica granatum HOM05D005586 ORTHO05D007044 1.8e-239 832.8 640 69.4
Sc08g0005320 Simmondsia chinensis HOM05D005586 ORTHO05D007044 1.8e-239 832.8 645 69.1
Phvul.003G146100 Phaseolus vulgaris HOM05D005586 ORTHO05D007044 8.8e-239 830.5 641 69.1
Ciclev10007551m.g Citrus clementina HOM05D005586 ORTHO05D007044 1.2e-238 830.1 653 67.4
Eucgr.C02307 Eucalyptus grandis HOM05D005586 ORTHO05D007044 5.7e-238 827.8 657 67.1
VMungo1215G0758 Vigna mungo HOM05D005586 ORTHO05D007044 2.8e-237 825.5 628 71.2
Thecc.09G173100 Theobroma cacao HOM05D005586 ORTHO05D007044 7.0e-236 820.8 632 70.3
Haze_22099 Corylus avellana HOM05D005586 ORTHO05D007044 1.2e-235 820.1 654 67.1
THA.LOC104811789 Tarenaya hassleriana HOM05D005586 ORTHO05D007044 1.2e-235 820.1 650 67.1
Psat0s509g0200 Pisum sativum HOM05D005586 ORTHO05D007044 2.0e-235 819.3 646 67.0
EL10Ac8g18286 Beta vulgaris HOM05D005586 ORTHO05D007044 2.7e-235 818.9 652 67.5
Cfa013507 Carpinus fangiana HOM05D005586 ORTHO05D007044 4.5e-235 818.1 656 66.6
QL02p097708 Quercus lobata HOM05D005586 ORTHO05D007044 7.7e-235 817.4 650 67.2
Manes.14G153700 Manihot esculenta HOM05D005586 ORTHO05D007044 1.7e-234 816.2 631 67.8
Cpa.g.sc95.50 Carica papaya HOM05D005586 ORTHO05D007044 5.0e-234 814.7 631 68.8
MD13G1254800 Malus domestica HOM05D005586 ORTHO05D007044 5.0e-234 814.7 637 67.8
BcaB08g36100 Brassica carinata HOM05D005586 ORTHO05D007044 6.6e-234 814.3 652 66.7
BraA10t43568Z Brassica rapa HOM05D005586 ORTHO05D007044 1.2e-232 810.1 652 66.1
BcaB01g04458 Brassica carinata HOM05D005586 ORTHO05D007044 4.7e-232 808.1 653 65.7
MBI03_g13495_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 1.8e-231 806.2 646 65.8
Aa31LG3G13340 Aethionema arabicum HOM05D005586 ORTHO05D007044 1.2e-230 803.5 650 64.6
AL8G33420 Arabidopsis lyrata HOM05D005586 ORTHO05D007044 2.0e-230 802.7 654 65.4
Nn4g25000 Nelumbo nucifera HOM05D005586 ORTHO05D007044 3.4e-230 802.0 622 68.2
C03p14980 Brassica napus HOM05D005586 ORTHO05D007044 5.7e-230 801.2 656 65.1
C09p49310 Brassica napus HOM05D005586 ORTHO05D007044 9.8e-230 800.4 656 65.5
A10p14890 Brassica napus HOM05D005586 ORTHO05D007044 2.9e-229 798.9 654 65.0
BcaC04g19966 Brassica carinata HOM05D005586 ORTHO05D007044 3.7e-229 798.5 658 65.2
CARHR271250 Cardamine hirsuta HOM05D005586 ORTHO05D007044 4.9e-229 798.1 661 64.3
A03p12820 Brassica napus HOM05D005586 ORTHO05D007044 6.4e-229 797.7 654 65.0
BolC3t13940H Brassica oleracea HOM05D005586 ORTHO05D007044 1.1e-228 797.0 655 64.9
BraA03t10590Z Brassica rapa HOM05D005586 ORTHO05D007044 1.1e-228 797.0 653 64.9
AT5G57460 Arabidopsis thaliana HOM05D005586 ORTHO05D007044 1.4e-228 796.6 658 64.4
Sp6g19170 Schrenkiella parvula HOM05D005586 ORTHO05D007044 2.4e-228 795.8 652 64.6
BcaC01g06487 Brassica carinata HOM05D005586 ORTHO05D007044 4.1e-228 795.0 653 65.1
Carub.0008s1797 Capsella rubella HOM05D005586 ORTHO05D007044 5.4e-228 794.7 656 63.9
Aa31LG3G220 Aethionema arabicum HOM05D005586 ORTHO05D007044 4.6e-227 791.6 648 64.8
SalBow6G0691 Salvia bowleyana HOM05D005586 ORTHO05D007044 1.7e-226 789.6 641 66.8
GSVIVG01029208001 Vitis vinifera HOM05D005586 ORTHO05D007044 7.3e-225 784.3 639 66.5
Thhalv10015707m.g Eutrema salsugineum HOM05D005586 ORTHO05D007044 9.5e-225 783.9 652 62.7
SalBow1G5715 Salvia bowleyana HOM05D005586 ORTHO05D007044 8.0e-224 780.8 642 67.4
BolC9t57782H Brassica oleracea HOM05D005586 ORTHO05D007044 5.8e-222 774.6 656 64.3
Gohir.D08G094100 Gossypium hirsutum HOM05D005586 ORTHO05D007044 7.0e-220 767.7 650 64.3
AUR62021301 Chenopodium quinoa HOM05D005586 ORTHO05D007044 9.2e-220 767.3 651 63.9
AUR62033219 Chenopodium quinoa HOM05D005586 ORTHO05D007044 1.6e-219 766.5 651 63.7
TPR.G5407 Trifolium pratense HOM05D005586 ORTHO05D007044 3.9e-218 761.9 593 68.0
PSO541G5977 Papaver somniferum HOM05D005586 ORTHO05D007044 1.1e-215 753.8 654 62.4
CDE04G2484 Ceratophyllum demersum HOM05D005586 ORTHO05D007044 2.6e-214 749.2 638 62.2
SHI41749 Sapria himalayana HOM05D005586 ORTHO05D007044 5.4e-212 741.5 654 61.8
MBI14_g17367_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 2.1e-211 739.6 640 60.2
Actinidia15717 Actinidia chinensis HOM05D005586 ORTHO05D007044 1.8e-207 726.5 625 64.8
MD13G1254300 Malus domestica HOM05D005586 ORTHO05D007044 1.9e-201 706.4 647 61.2
ATR0618G120 Amborella trichopoda HOM05D005586 ORTHO05D007044 3.4e-198 695.7 644 57.9
Actinidia14649 Actinidia chinensis HOM05D005586 ORTHO05D007044 2.9e-197 692.6 541 69.9
SEGI_38070 Sequoiadendron giganteum HOM05D005586 ORTHO05D007044 1.8e-191 673.3 644 56.1
Hma1.2p1_3184F.1_g333760 Hydrangea macrophylla HOM05D005586 ORTHO05D007044 2.9e-189 666.0 636 60.2
Zm00001eb414690 Zea mays HOM05D005586 ORTHO05D007044 1.2e-187 660.6 648 56.9
MBI18_g04576_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 1.6e-187 660.2 636 59.4
Os08g0243900 Oryza sativa ssp. japonica HOM05D005586 ORTHO05D007044 8.1e-184 647.9 649 55.6
CDE02G2425 Ceratophyllum demersum HOM05D005586 ORTHO05D007044 1.3e-162 577.4 644 50.8
BcaC01g06491 Brassica carinata HOM05D005586 ORTHO05D007044 5.7e-161 572.0 619 54.3
MBI16_g35931_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 1.3e-160 570.9 542 60.1
Mapoly0111s0055 Marchantia polymorpha HOM05D005586 ORTHO05D007044 3.6e-147 526.2 667 47.7
Pp3c25_4850 Physcomitrium patens HOM05D005586 ORTHO05D007044 2.4e-143 513.5 666 44.9
BcaC01g06494 Brassica carinata HOM05D005586 ORTHO05D007044 4.5e-142 509.2 618 50.0
AagrBONN_evm.TU.Sc2ySwM_368.670 Anthoceros agrestis HOM05D005586 ORTHO05D007044 2.3e-122 443.7 670 41.3
unitig_899.g14852 Utricularia gibba HOM05D005586 ORTHO05D007044 6.6e-117 425.6 323 73.4
COL.COLO4_04392 Corchorus olitorius HOM05D005586 ORTHO05D007044 4.0e-114 416.4 351 63.5
unitig_899.g14851 Utricularia gibba HOM05D005586 ORTHO05D007044 2.3e-98 364.0 243 72.0
SMO228G0090 Selaginella moellendorffii HOM05D005586 ORTHO05D007044 4.4e-89 333.2 399 48.4
HPP92_000781 Vanilla planifolia HOM05D005586 ORTHO05D007044 1.3e-64 251.9 300 49.7
QL11p053068 Quercus lobata HOM05D005586 ORTHO05D007044 2.9e-40 171.0 120 79.2
CBR_g26159 Chara braunii HOM05D005586 ORTHO05D000002 7.2e-39 166.4 564 28.9
MD16G1258000 Malus domestica HOM05D005586 ORTHO05D007044 8.2e-35 152.9 122 61.5
MD16G1258100 Malus domestica HOM05D005586 ORTHO05D007044 1.5e-20 105.5 113 53.1
Oeu013635.1 Olea europaea HOM05D006172 ORTHO05D005515 4.4e-20 104.0 97 61.9
MBI16_g35933_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D009834 1.1e-10 72.8 41 85.4
CBR_g26157 Chara braunii HOM05D005586 ORTHO05D007044 2.4e-10 71.6 104 44.2
SalBow4G0612 Salvia bowleyana HOM05D005586 ORTHO05D360416 1.0e-08 66.2 45 64.4
MBI16_g35934_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 2.8e-06 58.2 50 50.0


User provided reference genes

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