Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen10g029400 Solanum pennellii HOM05D003436 ORTHO05D003674 1.0e-54 217.6 242 100.0
Solyc10g078780.2 Solanum lycopersicum HOM05D003436 ORTHO05D003674 3.6e-39 166.0 242 74.8
PGSC0003DMG400011439 Solanum tuberosum HOM05D003436 ORTHO05D003674 9.7e-37 157.9 109 86.2
CAN.G1161.31 Capsicum annuum HOM05D003436 ORTHO05D003674 5.0e-33 145.6 106 82.1
Nitab4.5_0002343g0050 Nicotiana tabacum HOM05D003436 ORTHO05D003674 8.8e-30 134.8 105 80.0
Peaxi162Scf00003g04337 Petunia axillaris HOM05D003436 ORTHO05D003674 1.3e-28 131.0 104 77.9
Nitab4.5_0000105g0110 Nicotiana tabacum HOM05D003436 ORTHO05D003674 1.7e-28 130.6 101 79.2
THA.LOC104826769 Tarenaya hassleriana HOM05D003436 ORTHO05D003674 2.9e-17 93.2 99 59.6
Dinv14294 Davidia involucrata HOM05D003436 ORTHO05D003674 1.5e-16 90.9 95 58.9
Nitab4.5_0000105g0090 Nicotiana tabacum HOM05D003436 ORTHO05D003674 1.5e-16 90.9 76 73.7
MSTRG.19903 Avicennia marina HOM05D003436 ORTHO05D003674 4.2e-16 89.4 94 58.5
SGA_v2.0_scaffold105G30485 Striga asiatica HOM05D003436 ORTHO05D003674 7.2e-16 88.6 94 57.4
Aa31sc24G30 Aethionema arabicum HOM05D003436 ORTHO05D003674 9.4e-16 88.2 100 55.0
Manes.08G044900 Manihot esculenta HOM05D003436 ORTHO05D003674 1.6e-15 87.4 101 56.4
Prupe.7G076400 Prunus persica HOM05D003436 ORTHO05D003674 2.1e-15 87.0 99 57.6
Eucgr.K01836 Eucalyptus grandis HOM05D003436 ORTHO05D003674 2.7e-15 86.7 85 63.5
Potri.016G046350 Populus trichocarpa HOM05D003436 ORTHO05D003674 3.6e-15 86.3 101 58.4
HanXRQChr05g0132881 Helianthus annuus HOM05D003436 ORTHO05D003674 6.1e-15 85.5 92 57.6
Lj1g0001300 Lotus japonicus HOM05D003436 ORTHO05D003674 6.1e-15 85.5 115 54.8
Sed0015125 Sechium edule HOM05D003436 ORTHO05D003674 6.1e-15 85.5 105 56.2
Thecc.05G170800 Theobroma cacao HOM05D003436 ORTHO05D003674 6.1e-15 85.5 85 61.2
Migut.J01829 Erythranthe guttata HOM05D003436 ORTHO05D003674 8.0e-15 85.1 98 55.1
BcaB01g06002 Brassica carinata HOM05D003436 ORTHO05D003674 2.3e-14 83.6 100 56.0
BcaC06g32544 Brassica carinata HOM05D003436 ORTHO05D003674 2.3e-14 83.6 100 55.0
CANSAT64G0020 Cannabis sativa HOM05D003436 ORTHO05D003674 3.0e-14 83.2 111 51.4
Dinv14293 Davidia involucrata HOM05D003436 ORTHO05D003674 3.0e-14 83.2 96 54.2
ECA236G0475 Erigeron canadensis HOM05D000402 ORTHO05D000263 3.0e-14 83.2 82 61.0
Lalb_Chr15g0078981 Lupinus albus HOM05D003436 ORTHO05D003674 5.2e-14 82.4 73 64.4
Peaxi162Scf00258g00520 Petunia axillaris HOM05D003436 ORTHO05D003674 5.2e-14 82.4 105 51.4
COL.COLO4_33990 Corchorus olitorius HOM05D011887 ORTHO05D003674 6.8e-14 82.0 101 54.5
MELO3C008930.2 Cucumis melo HOM05D003436 ORTHO05D003674 6.8e-14 82.0 105 53.3
Gohir.D01G178300 Gossypium hirsutum HOM05D003436 ORTHO05D003674 6.8e-14 82.0 87 57.5
Gorai.002G224800 Gossypium raimondii HOM05D003436 ORTHO05D003674 6.8e-14 82.0 87 57.5
arahy.Tifrunner.gnm1.ann1.00VVAL Arachis hypogaea HOM05D003436 ORTHO05D003674 8.8e-14 81.6 93 55.9
C03p03320 Brassica napus HOM05D003436 ORTHO05D003674 8.8e-14 81.6 100 54.0
BolC3t12875H Brassica oleracea HOM05D003436 ORTHO05D003674 8.8e-14 81.6 100 54.0
Gohir.A01G191700 Gossypium hirsutum HOM05D003436 ORTHO05D003674 8.8e-14 81.6 85 57.6
Medtr7g093170 Medicago truncatula HOM05D003436 ORTHO05D003674 8.8e-14 81.6 101 54.5
arahy.Tifrunner.gnm1.ann1.95S5ZX Arachis hypogaea HOM05D003436 ORTHO05D003674 1.2e-13 81.3 93 54.8
MD12G1057800 Malus domestica HOM05D003436 ORTHO05D003674 1.2e-13 81.3 99 60.6
Cc06_g15980 Coffea canephora HOM05D003436 ORTHO05D003674 1.5e-13 80.9 95 56.8
A10p29610 Brassica napus HOM05D003436 ORTHO05D003674 2.6e-13 80.1 100 53.0
C09p69990 Brassica napus HOM05D003436 ORTHO05D003674 2.6e-13 80.1 100 53.0
BolC9t59741H Brassica oleracea HOM05D003436 ORTHO05D003674 2.6e-13 80.1 100 53.0
BraA10t45003Z Brassica rapa HOM05D003436 ORTHO05D003674 2.6e-13 80.1 100 53.0
PSO339G4457 Papaver somniferum HOM05D003436 ORTHO05D003674 2.6e-13 80.1 95 53.7
Sp6g36090 Schrenkiella parvula HOM05D003436 ORTHO05D003674 2.6e-13 80.1 100 53.0
Aqoxy7G03903 Aquilegia oxysepala HOM05D003436 ORTHO05D003674 4.4e-13 79.3 99 49.5
Ciclev10012978m.g Citrus clementina HOM05D003436 ORTHO05D003674 4.4e-13 79.3 97 52.6
Phvul.001G143100 Phaseolus vulgaris HOM05D003436 ORTHO05D003674 4.4e-13 79.3 99 53.5
Sed0019071 Sechium edule HOM05D003436 ORTHO05D003674 4.4e-13 79.3 99 53.5
Nitab4.5_0008334g0020 Nicotiana tabacum HOM05D003436 ORTHO05D003674 5.7e-13 79.0 97 53.6
BcaC06g32392 Brassica carinata HOM05D003436 ORTHO05D003674 7.5e-13 78.6 100 52.0
Lj5g0013312 Lotus japonicus HOM05D003436 ORTHO05D003674 7.5e-13 78.6 99 53.5
Phvul.001G142000 Phaseolus vulgaris HOM05D003436 ORTHO05D003674 7.5e-13 78.6 99 54.5
QL07p023622 Quercus lobata HOM05D003436 ORTHO05D003674 7.5e-13 78.6 82 58.5
Atru.chr8.1096 Acer truncatum HOM05D003436 ORTHO05D003674 9.8e-13 78.2 106 50.9
ClCG04G002110 Citrullus lanatus HOM05D003436 ORTHO05D003674 9.8e-13 78.2 102 51.0
MBI04_g14513_MAGBIO Magnolia biondii HOM05D003436 ORTHO05D003674 9.8e-13 78.2 95 55.8
Medtr7g093140 Medicago truncatula HOM05D003436 ORTHO05D003674 9.8e-13 78.2 90 54.4
TPR.G27745 Trifolium pratense HOM05D003436 ORTHO05D003674 9.8e-13 78.2 84 58.3
Medtr1g053970 Medicago truncatula HOM05D003436 ORTHO05D003674 1.3e-12 77.8 99 55.6
Medtr7g093160 Medicago truncatula HOM05D003436 ORTHO05D003674 1.3e-12 77.8 96 55.2
Cpa.g.sc85.72 Carica papaya HOM05D003436 ORTHO05D003674 1.7e-12 77.4 79 58.2
Glyma.03G144400 Glycine max HOM05D003436 ORTHO05D003674 1.7e-12 77.4 107 51.4
Psat3g068920 Pisum sativum HOM05D003436 ORTHO05D003674 1.7e-12 77.4 99 54.5
Psat6g120960 Pisum sativum HOM05D003436 ORTHO05D003674 1.7e-12 77.4 94 55.3
Sabra16G0050300 Salix brachista HOM05D003436 ORTHO05D003674 1.7e-12 77.4 100 56.0
Ca_25707_v3 Cicer arietinum L. HOM05D003436 ORTHO05D003674 2.2e-12 77.0 103 52.4
GSVIVG01033505001 Vitis vinifera HOM05D003436 ORTHO05D003674 2.2e-12 77.0 95 56.8
Ca_08518_v3 Cicer arietinum L. HOM05D003436 ORTHO05D003674 2.8e-12 76.6 102 52.9
CsaV3_4G030630 Cucumis sativus L. HOM05D003436 ORTHO05D003674 2.8e-12 76.6 104 51.9
ECA236G0537 Erigeron canadensis HOM05D003436 ORTHO05D003674 2.8e-12 76.6 85 57.6
Oeu033740.1 Olea europaea HOM05D003436 ORTHO05D003674 2.8e-12 76.6 92 54.3
Peaxi162Scf00003g04347 Petunia axillaris HOM05D003436 ORTHO05D003674 2.8e-12 76.6 97 54.6
BcaB01g06022 Brassica carinata HOM05D003436 ORTHO05D003674 3.7e-12 76.3 100 53.0
CARHR206420 Cardamine hirsuta HOM05D003436 ORTHO05D003674 3.7e-12 76.3 100 53.0
Nitab4.5_0001538g0030 Nicotiana tabacum HOM05D003436 ORTHO05D003674 3.7e-12 76.3 95 55.8
Oeu034263.1 Olea europaea HOM05D008970 ORTHO05D003674 3.7e-12 76.3 97 56.7
vmacro07911 Vaccinium macrocarpon HOM05D003436 ORTHO05D003674 3.7e-12 76.3 101 51.5
Actinidia22034 Actinidia chinensis HOM05D003436 ORTHO05D003674 4.9e-12 75.9 122 47.5
AL6G16870 Arabidopsis lyrata HOM05D003436 ORTHO05D003674 4.9e-12 75.9 100 53.0
Psat0s797g0160 Pisum sativum HOM05D003436 ORTHO05D003674 4.9e-12 75.9 97 52.6
A03p02880 Brassica napus HOM05D003436 ORTHO05D003674 6.3e-12 75.5 101 55.4
BraA03t09652Z Brassica rapa HOM05D003436 ORTHO05D003674 6.3e-12 75.5 101 55.4
AT5G06760 Arabidopsis thaliana HOM05D003436 ORTHO05D003674 8.3e-12 75.1 100 52.0
CDE06G2670 Ceratophyllum demersum HOM05D003436 ORTHO05D003674 8.3e-12 75.1 106 51.9
TWI53G0478 Tripterygium wilfordii HOM05D003436 ORTHO05D003674 8.3e-12 75.1 105 51.4
GSVIVG01033503001 Vitis vinifera HOM05D003436 ORTHO05D003674 8.3e-12 75.1 102 49.0
C03p03280 Brassica napus HOM05D003436 ORTHO05D003674 1.1e-11 74.7 102 54.9
MBI04_g39831_MAGBIO Magnolia biondii HOM05D003436 ORTHO05D003674 1.1e-11 74.7 95 53.7
Nitab4.5_0000105g0070 Nicotiana tabacum HOM05D003436 ORTHO05D003674 1.1e-11 74.7 91 54.9
Rhsim03G0006400 Rhododendron simsii HOM05D003436 ORTHO05D003674 1.1e-11 74.7 102 52.0
BcaB01g06026 Brassica carinata HOM05D003436 ORTHO05D003674 1.4e-11 74.3 100 53.0
Thhalv10014897m.g Eutrema salsugineum HOM05D003436 ORTHO05D003674 1.4e-11 74.3 98 52.0
Glyma.19G147200 Glycine max HOM05D003436 ORTHO05D003674 1.4e-11 74.3 101 48.5
RcHm_v2.0_Chr3g0479771 Rosa chinensis HOM05D003436 ORTHO05D003674 1.4e-11 74.3 81 55.6
Nitab4.5_0000324g0100 Nicotiana tabacum HOM05D003436 ORTHO05D003674 2.4e-11 73.6 99 50.5
PGSC0003DMG400011438 Solanum tuberosum HOM05D003436 ORTHO05D003674 2.4e-11 73.6 90 55.6
unitig_899.g15079 Utricularia gibba HOM05D003436 ORTHO05D003674 2.4e-11 73.6 76 55.3
Nitab4.5_0008334g0040 Nicotiana tabacum HOM05D003436 ORTHO05D003674 3.1e-11 73.2 112 48.2
TWI74G0976 Tripterygium wilfordii HOM05D003436 ORTHO05D003674 3.1e-11 73.2 105 50.5
FAN02G3232 Fragaria x ananassa HOM05D003436 ORTHO05D003674 4.1e-11 72.8 110 48.2
Lsat_1_v5_gn_8_75321 Lactuca sativa HOM05D003436 ORTHO05D003674 7.0e-11 72.0 91 56.0
Lalb_Chr04g0261031 Lupinus albus HOM05D003436 ORTHO05D003674 9.2e-11 71.6 100 46.0
Psat0s797g0240 Pisum sativum HOM05D003436 ORTHO05D003674 9.2e-11 71.6 99 48.5
SalBow4G2804 Salvia bowleyana HOM05D003436 ORTHO05D003674 1.2e-10 71.2 101 50.5
Sc19g0007020 Simmondsia chinensis HOM05D003436 ORTHO05D003674 1.2e-10 71.2 94 52.1
FAN14G5712 Fragaria x ananassa HOM05D003436 ORTHO05D003674 1.6e-10 70.9 81 53.1
PGSC0003DMG400011437 Solanum tuberosum HOM05D003436 ORTHO05D003674 1.6e-10 70.9 91 51.6
VMungo1383G0252 Vigna mungo HOM05D003436 ORTHO05D003674 1.6e-10 70.9 114 45.6
Ca_05483_v3 Cicer arietinum L. HOM05D003436 ORTHO05D003674 2.7e-10 70.1 91 52.7
ClCG10G017480 Citrullus lanatus HOM05D003436 ORTHO05D003674 2.7e-10 70.1 79 51.9
Hma1.2p1_0386F.1_g141820 Hydrangea macrophylla HOM05D003436 ORTHO05D003674 2.7e-10 70.1 105 48.6
Nitab4.5_0000324g0070 Nicotiana tabacum HOM05D003436 ORTHO05D003674 2.7e-10 70.1 69 58.0
Sopen10g029380 Solanum pennellii HOM05D003436 ORTHO05D003674 3.5e-10 69.7 98 50.0
FvH4_6g22410 Fragaria vesca HOM05D003436 ORTHO05D003674 4.5e-10 69.3 81 51.9
Solyc10g078760.2 Solanum lycopersicum HOM05D003436 ORTHO05D003674 4.5e-10 69.3 98 49.0
ATR0605G384 Amborella trichopoda HOM05D003436 ORTHO05D003674 5.9e-10 68.9 101 47.5
Carub.0006s0565 Capsella rubella HOM05D003436 ORTHO05D003674 5.9e-10 68.9 100 51.0
VMungo1383G0066 Vigna mungo HOM05D003436 ORTHO05D003674 5.9e-10 68.9 102 48.0
Solyc10g078770.2 Solanum lycopersicum HOM05D003436 ORTHO05D003674 7.7e-10 68.6 69 59.4
Sopen10g029390 Solanum pennellii HOM05D003436 ORTHO05D003674 7.7e-10 68.6 69 59.4
CAN.G1161.29 Capsicum annuum HOM05D003436 ORTHO05D003674 1.3e-09 67.8 108 46.3
CAN.G1161.30 Capsicum annuum HOM05D003436 ORTHO05D003674 1.3e-09 67.8 80 55.0
DCAR_013554 Daucus carota HOM05D003436 ORTHO05D003674 1.3e-09 67.8 107 49.5
MELO3C009631.2 Cucumis melo HOM05D003436 ORTHO05D003674 1.7e-09 67.4 71 53.5
CsaV3_3G038880 Cucumis sativus L. HOM05D003436 ORTHO05D003674 1.7e-09 67.4 77 51.9
vmacro07912 Vaccinium macrocarpon HOM05D003436 ORTHO05D003674 1.7e-09 67.4 101 49.5
unitig_736.g22300 Utricularia gibba HOM05D000267 ORTHO05D000298 2.3e-09 67.0 100 49.0
Glyma.09G112100 Glycine max HOM05D003436 ORTHO05D003674 2.9e-09 66.6 75 53.3
SalBow1G8531 Salvia bowleyana HOM05D003436 ORTHO05D003674 2.9e-09 66.6 87 52.9
AUR62012039 Chenopodium quinoa HOM05D003436 ORTHO05D003674 3.8e-09 66.2 118 44.1
VMungo0720G0768 Vigna mungo HOM05D003436 ORTHO05D003674 1.1e-08 64.7 111 43.2
TWI77G0090 Tripterygium wilfordii HOM05D003436 ORTHO05D003674 1.9e-08 63.9 91 48.4
Actinidia32389 Actinidia chinensis HOM05D003436 ORTHO05D003674 2.5e-08 63.5 90 51.1
Rhsim03G0006300 Rhododendron simsii HOM05D003436 ORTHO05D003674 2.5e-08 63.5 105 45.7
HanXRQChr10g0300671 Helianthus annuus HOM05D003436 ORTHO05D003674 4.3e-08 62.8 96 52.1
Nitab4.5_0000105g0100 Nicotiana tabacum HOM05D003436 ORTHO05D003674 5.6e-08 62.4 89 53.9
DCAR_019788 Daucus carota HOM05D003436 ORTHO05D003674 7.3e-08 62.0 74 54.1
EL10Ac3g06923 Beta vulgaris HOM05D003436 ORTHO05D003674 9.5e-08 61.6 99 44.4
Aqoxy2G03681 Aquilegia oxysepala HOM05D003436 ORTHO05D003674 1.2e-07 61.2 59 54.2
Aqoxy7G02037 Aquilegia oxysepala HOM05D003436 ORTHO05D003674 1.2e-07 61.2 59 54.2
Nitab4.5_0001538g0010 Nicotiana tabacum HOM05D003436 ORTHO05D003674 1.2e-07 61.2 94 52.1
Cfa020173 Carpinus fangiana HOM05D003436 ORTHO05D003674 1.6e-07 60.8 72 52.8
arahy.Tifrunner.gnm1.ann1.BAUA8N Arachis hypogaea HOM05D003436 ORTHO05D003674 2.8e-07 60.1 97 46.4
Haze_19983 Corylus avellana HOM05D003436 ORTHO05D003674 2.8e-07 60.1 73 50.7
Sc19g0007030 Simmondsia chinensis HOM05D003436 ORTHO05D003674 3.6e-07 59.7 85 45.9
Nn7g36015 Nelumbo nucifera HOM05D003436 ORTHO05D003674 4.7e-07 59.3 95 44.2
Cc06_g15970 Coffea canephora HOM05D003436 ORTHO05D003674 6.1e-07 58.9 100 47.0
Nitab4.5_0000105g0080 Nicotiana tabacum HOM05D003436 ORTHO05D003674 6.1e-07 58.9 89 51.7
Sed0013894 Sechium edule HOM05D003436 ORTHO05D003674 8.0e-07 58.5 95 46.3
Ah.13g075890 Amaranthus hybridus HOM05D003436 ORTHO05D003674 1.4e-06 57.8 85 49.4
Peaxi162Scf00003g04336 Petunia axillaris HOM05D003436 ORTHO05D003674 1.4e-06 57.8 86 47.7
Ah.08g210350 Amaranthus hybridus HOM05D003436 ORTHO05D003674 2.3e-06 57.0 92 43.5
Cfa020175 Carpinus fangiana HOM05D003436 ORTHO05D003674 2.3e-06 57.0 82 47.6
AUR62015378 Chenopodium quinoa HOM05D003436 ORTHO05D003674 2.3e-06 57.0 115 40.9
PSO170G2585 Papaver somniferum HOM05D003436 ORTHO05D003674 2.3e-06 57.0 51 56.9
Aqoxy3G02738 Aquilegia oxysepala HOM05D003436 ORTHO05D003674 5.2e-06 55.8 54 53.7
Aqoxy6G00181 Aquilegia oxysepala HOM05D003436 ORTHO05D003674 5.2e-06 55.8 99 40.4


User provided reference genes

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