Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen10g029380 Solanum pennellii HOM05D003436 ORTHO05D003674 4.2e-44 181.0 94 100.0
Solyc10g078760.2 Solanum lycopersicum HOM05D003436 ORTHO05D003674 6.6e-42 173.7 94 96.8
PGSC0003DMG400011437 Solanum tuberosum HOM05D003436 ORTHO05D003674 1.6e-35 152.5 95 88.4
CAN.G1161.29 Capsicum annuum HOM05D003436 ORTHO05D003674 1.7e-29 132.5 90 82.2
Peaxi162Scf00003g04347 Petunia axillaris HOM05D003436 ORTHO05D003674 8.4e-29 130.2 88 78.4
Nitab4.5_0001538g0030 Nicotiana tabacum HOM05D003436 ORTHO05D003674 7.1e-28 127.1 88 77.3
Nitab4.5_0000105g0070 Nicotiana tabacum HOM05D003436 ORTHO05D003674 7.9e-27 123.6 88 75.0
Peaxi162Scf00258g00520 Petunia axillaris HOM05D003436 ORTHO05D003674 3.5e-19 98.2 92 63.0
THA.LOC104826769 Tarenaya hassleriana HOM05D003436 ORTHO05D003674 4.6e-19 97.8 89 58.4
Cc06_g15980 Coffea canephora HOM05D003436 ORTHO05D003674 8.7e-18 93.6 92 60.9
Aa31sc24G30 Aethionema arabicum HOM05D003436 ORTHO05D003674 2.5e-17 92.0 89 56.2
Nitab4.5_0008334g0020 Nicotiana tabacum HOM05D003436 ORTHO05D003674 2.5e-17 92.0 93 61.3
SGA_v2.0_scaffold105G30485 Striga asiatica HOM05D003436 ORTHO05D003674 4.3e-17 91.3 90 56.7
Nitab4.5_0000324g0100 Nicotiana tabacum HOM05D003436 ORTHO05D003674 9.7e-17 90.1 92 60.9
RcHm_v2.0_Chr3g0479771 Rosa chinensis HOM05D003436 ORTHO05D003674 1.3e-16 89.7 72 68.1
FAN02G3232 Fragaria x ananassa HOM05D003436 ORTHO05D003674 2.8e-16 88.6 94 57.4
Ciclev10012978m.g Citrus clementina HOM05D003436 ORTHO05D003674 4.8e-16 87.8 91 60.4
TWI53G0478 Tripterygium wilfordii HOM05D003436 ORTHO05D003674 1.8e-15 85.9 88 59.1
MSTRG.19903 Avicennia marina HOM05D003436 ORTHO05D003674 3.1e-15 85.1 90 54.4
Aqoxy7G03903 Aquilegia oxysepala HOM05D003436 ORTHO05D003674 4.1e-15 84.7 90 55.6
FvH4_6g22410 Fragaria vesca HOM05D003436 ORTHO05D003674 4.1e-15 84.7 73 63.0
FAN14G5712 Fragaria x ananassa HOM05D003436 ORTHO05D003674 4.1e-15 84.7 73 63.0
MD12G1057800 Malus domestica HOM05D003436 ORTHO05D003674 4.1e-15 84.7 93 55.9
C03p03320 Brassica napus HOM05D003436 ORTHO05D003674 5.3e-15 84.3 93 52.7
BolC3t12875H Brassica oleracea HOM05D003436 ORTHO05D003674 5.3e-15 84.3 93 52.7
Thhalv10014897m.g Eutrema salsugineum HOM05D003436 ORTHO05D003674 5.3e-15 84.3 93 52.7
Prupe.7G076400 Prunus persica HOM05D003436 ORTHO05D003674 6.9e-15 84.0 86 59.3
Actinidia22034 Actinidia chinensis HOM05D003436 ORTHO05D003674 9.0e-15 83.6 91 52.7
Manes.08G044900 Manihot esculenta HOM05D003436 ORTHO05D003674 1.2e-14 83.2 102 52.9
Nn7g36015 Nelumbo nucifera HOM05D003436 ORTHO05D003674 1.2e-14 83.2 94 56.4
BcaC06g32544 Brassica carinata HOM05D003436 ORTHO05D003674 1.5e-14 82.8 93 51.6
MELO3C008930.2 Cucumis melo HOM05D003436 ORTHO05D003674 1.5e-14 82.8 87 54.0
Sp6g36090 Schrenkiella parvula HOM05D003436 ORTHO05D003674 1.5e-14 82.8 91 52.7
A10p29610 Brassica napus HOM05D003436 ORTHO05D003674 2.0e-14 82.4 93 51.6
C09p69990 Brassica napus HOM05D003436 ORTHO05D003674 2.0e-14 82.4 93 51.6
BolC9t59741H Brassica oleracea HOM05D003436 ORTHO05D003674 2.0e-14 82.4 93 51.6
BraA10t45003Z Brassica rapa HOM05D003436 ORTHO05D003674 2.0e-14 82.4 93 51.6
Nitab4.5_0000105g0110 Nicotiana tabacum HOM05D003436 ORTHO05D003674 2.0e-14 82.4 88 58.0
Oeu033740.1 Olea europaea HOM05D003436 ORTHO05D003674 2.0e-14 82.4 88 56.8
Dinv14294 Davidia involucrata HOM05D003436 ORTHO05D003674 2.6e-14 82.0 89 55.1
Psat0s797g0240 Pisum sativum HOM05D003436 ORTHO05D003674 2.6e-14 82.0 91 51.6
Medtr7g093140 Medicago truncatula HOM05D003436 ORTHO05D003674 3.4e-14 81.6 84 54.8
Atru.chr8.1096 Acer truncatum HOM05D003436 ORTHO05D003674 4.5e-14 81.3 88 53.4
EL10Ac3g06923 Beta vulgaris HOM05D003436 ORTHO05D003674 4.5e-14 81.3 98 52.0
BcaB01g06002 Brassica carinata HOM05D003436 ORTHO05D003674 4.5e-14 81.3 95 50.5
CARHR206420 Cardamine hirsuta HOM05D003436 ORTHO05D003674 4.5e-14 81.3 74 59.5
Cpa.g.sc85.72 Carica papaya HOM05D003436 ORTHO05D003674 4.5e-14 81.3 77 62.3
Ah.08g210350 Amaranthus hybridus HOM05D003436 ORTHO05D003674 5.9e-14 80.9 68 66.2
AL6G16870 Arabidopsis lyrata HOM05D003436 ORTHO05D003674 5.9e-14 80.9 74 59.5
AT5G06760 Arabidopsis thaliana HOM05D003436 ORTHO05D003674 5.9e-14 80.9 74 59.5
BcaC06g32392 Brassica carinata HOM05D003436 ORTHO05D003674 5.9e-14 80.9 93 50.5
Nitab4.5_0002343g0050 Nicotiana tabacum HOM05D003436 ORTHO05D003674 5.9e-14 80.9 76 61.8
Medtr7g093160 Medicago truncatula HOM05D003436 ORTHO05D003674 7.7e-14 80.5 84 53.6
Potri.016G046350 Populus trichocarpa HOM05D003436 ORTHO05D003674 7.7e-14 80.5 89 55.1
ATR0605G384 Amborella trichopoda HOM05D003436 ORTHO05D003674 1.0e-13 80.1 97 51.5
CANSAT64G0020 Cannabis sativa HOM05D003436 ORTHO05D003674 1.3e-13 79.7 91 53.8
Eucgr.K01836 Eucalyptus grandis HOM05D003436 ORTHO05D003674 1.3e-13 79.7 87 58.6
Medtr7g093170 Medicago truncatula HOM05D003436 ORTHO05D003674 1.3e-13 79.7 90 50.0
Nitab4.5_0008334g0040 Nicotiana tabacum HOM05D003436 ORTHO05D003674 1.3e-13 79.7 88 54.5
TWI77G0090 Tripterygium wilfordii HOM05D003436 ORTHO05D003674 1.3e-13 79.7 89 55.1
Ca_08518_v3 Cicer arietinum L. HOM05D003436 ORTHO05D003674 1.7e-13 79.3 89 52.8
Peaxi162Scf00003g04337 Petunia axillaris HOM05D003436 ORTHO05D003674 1.7e-13 79.3 93 55.9
TWI74G0976 Tripterygium wilfordii HOM05D003436 ORTHO05D003674 2.2e-13 79.0 94 54.3
CsaV3_4G030630 Cucumis sativus L. HOM05D003436 ORTHO05D003674 2.9e-13 78.6 87 51.7
Medtr1g053970 Medicago truncatula HOM05D003436 ORTHO05D003674 2.9e-13 78.6 91 52.7
BcaB01g06022 Brassica carinata HOM05D003436 ORTHO05D003674 3.8e-13 78.2 93 51.6
Carub.0006s0565 Capsella rubella HOM05D003436 ORTHO05D003674 3.8e-13 78.2 74 59.5
CAN.G1161.31 Capsicum annuum HOM05D003436 ORTHO05D003674 3.8e-13 78.2 88 54.5
AUR62015378 Chenopodium quinoa HOM05D003436 ORTHO05D003674 5.0e-13 77.8 78 56.4
Sabra16G0050300 Salix brachista HOM05D003436 ORTHO05D003674 5.0e-13 77.8 89 53.9
Sed0015125 Sechium edule HOM05D003436 ORTHO05D003674 6.5e-13 77.4 90 53.3
Sopen10g029400 Solanum pennellii HOM05D003436 ORTHO05D003674 8.5e-13 77.0 98 50.0
COL.COLO4_33990 Corchorus olitorius HOM05D011887 ORTHO05D003674 1.1e-12 76.6 76 53.9
PGSC0003DMG400011439 Solanum tuberosum HOM05D003436 ORTHO05D003674 1.1e-12 76.6 88 54.5
Thecc.05G170800 Theobroma cacao HOM05D003436 ORTHO05D003674 1.1e-12 76.6 89 51.7
A03p02880 Brassica napus HOM05D003436 ORTHO05D003674 1.4e-12 76.3 94 51.1
BraA03t09652Z Brassica rapa HOM05D003436 ORTHO05D003674 1.4e-12 76.3 94 51.1
Solyc10g078780.2 Solanum lycopersicum HOM05D003436 ORTHO05D003674 1.4e-12 76.3 88 53.4
VMungo1383G0252 Vigna mungo HOM05D003436 ORTHO05D003674 1.4e-12 76.3 90 50.0
AUR62012039 Chenopodium quinoa HOM05D003436 ORTHO05D003674 1.9e-12 75.9 111 47.7
Migut.J01829 Erythranthe guttata HOM05D003436 ORTHO05D003674 1.9e-12 75.9 91 54.9
BcaB01g06026 Brassica carinata HOM05D003436 ORTHO05D003674 2.5e-12 75.5 93 50.5
CsaV3_3G038880 Cucumis sativus L. HOM05D003436 ORTHO05D003674 2.5e-12 75.5 77 59.7
ECA236G0475 Erigeron canadensis HOM05D000402 ORTHO05D000263 2.5e-12 75.5 89 51.7
Gohir.A01G191700 Gossypium hirsutum HOM05D003436 ORTHO05D003674 2.5e-12 75.5 76 56.6
Gohir.D01G178300 Gossypium hirsutum HOM05D003436 ORTHO05D003674 2.5e-12 75.5 88 52.3
Gorai.002G224800 Gossypium raimondii HOM05D003436 ORTHO05D003674 2.5e-12 75.5 88 52.3
Lalb_Chr04g0261031 Lupinus albus HOM05D003436 ORTHO05D003674 2.5e-12 75.5 76 55.3
PSO339G4457 Papaver somniferum HOM05D003436 ORTHO05D003674 2.5e-12 75.5 90 51.1
Glyma.19G147200 Glycine max HOM05D003436 ORTHO05D003674 3.2e-12 75.1 87 49.4
Psat3g068920 Pisum sativum HOM05D003436 ORTHO05D003674 3.2e-12 75.1 100 46.0
Ca_25707_v3 Cicer arietinum L. HOM05D003436 ORTHO05D003674 4.2e-12 74.7 76 55.3
ClCG04G002110 Citrullus lanatus HOM05D003436 ORTHO05D003674 4.2e-12 74.7 90 52.2
GSVIVG01033505001 Vitis vinifera HOM05D003436 ORTHO05D003674 4.2e-12 74.7 83 54.2
MELO3C009631.2 Cucumis melo HOM05D003436 ORTHO05D003674 7.2e-12 73.9 75 60.0
Glyma.03G144400 Glycine max HOM05D003436 ORTHO05D003674 7.2e-12 73.9 90 46.7
Phvul.001G143100 Phaseolus vulgaris HOM05D003436 ORTHO05D003674 7.2e-12 73.9 84 50.0
C03p03280 Brassica napus HOM05D003436 ORTHO05D003674 9.4e-12 73.6 93 50.5
QL07p023622 Quercus lobata HOM05D003436 ORTHO05D003674 9.4e-12 73.6 76 57.9
ClCG10G017480 Citrullus lanatus HOM05D003436 ORTHO05D003674 1.2e-11 73.2 81 56.8
VMungo1383G0066 Vigna mungo HOM05D003436 ORTHO05D003674 1.6e-11 72.8 65 56.9
HanXRQChr05g0132881 Helianthus annuus HOM05D003436 ORTHO05D003674 2.1e-11 72.4 88 46.6
Lalb_Chr15g0078981 Lupinus albus HOM05D003436 ORTHO05D003674 2.1e-11 72.4 87 50.6
Aqoxy2G03681 Aquilegia oxysepala HOM05D003436 ORTHO05D003674 2.7e-11 72.0 62 62.9
Aqoxy7G02037 Aquilegia oxysepala HOM05D003436 ORTHO05D003674 2.7e-11 72.0 62 62.9
Lj1g0001300 Lotus japonicus HOM05D003436 ORTHO05D003674 2.7e-11 72.0 72 52.8
Nitab4.5_0000324g0070 Nicotiana tabacum HOM05D003436 ORTHO05D003674 2.7e-11 72.0 68 57.4
Oeu034263.1 Olea europaea HOM05D008970 ORTHO05D003674 2.7e-11 72.0 89 53.9
Psat0s797g0160 Pisum sativum HOM05D003436 ORTHO05D003674 3.6e-11 71.6 91 47.3
Rhsim03G0006400 Rhododendron simsii HOM05D003436 ORTHO05D003674 4.6e-11 71.2 88 51.1
TPR.G27745 Trifolium pratense HOM05D003436 ORTHO05D003674 6.1e-11 70.9 90 47.8
arahy.Tifrunner.gnm1.ann1.95S5ZX Arachis hypogaea HOM05D003436 ORTHO05D003674 7.9e-11 70.5 86 48.8
Sed0019071 Sechium edule HOM05D003436 ORTHO05D003674 7.9e-11 70.5 86 51.2
MBI04_g14513_MAGBIO Magnolia biondii HOM05D003436 ORTHO05D003674 1.4e-10 69.7 88 48.9
arahy.Tifrunner.gnm1.ann1.00VVAL Arachis hypogaea HOM05D003436 ORTHO05D003674 1.8e-10 69.3 86 48.8
SalBow4G2804 Salvia bowleyana HOM05D003436 ORTHO05D003674 1.8e-10 69.3 79 53.2
CDE06G2670 Ceratophyllum demersum HOM05D003436 ORTHO05D003674 2.3e-10 68.9 101 48.5
Psat6g120960 Pisum sativum HOM05D003436 ORTHO05D003674 2.3e-10 68.9 76 53.9
ECA236G0537 Erigeron canadensis HOM05D003436 ORTHO05D003674 3.0e-10 68.6 83 51.8
Lj5g0013312 Lotus japonicus HOM05D003436 ORTHO05D003674 3.0e-10 68.6 86 48.8
unitig_899.g15079 Utricularia gibba HOM05D003436 ORTHO05D003674 3.0e-10 68.6 76 55.3
SalBow1G8531 Salvia bowleyana HOM05D003436 ORTHO05D003674 6.7e-10 67.4 87 50.6
VMungo0720G0768 Vigna mungo HOM05D003436 ORTHO05D003674 6.7e-10 67.4 90 50.0
arahy.Tifrunner.gnm1.ann1.BAUA8N Arachis hypogaea HOM05D003436 ORTHO05D003674 1.5e-09 66.2 99 43.4
MBI04_g39831_MAGBIO Magnolia biondii HOM05D003436 ORTHO05D003674 1.5e-09 66.2 88 46.6
unitig_736.g22300 Utricularia gibba HOM05D000267 ORTHO05D000298 2.0e-09 65.9 88 51.1
Haze_19983 Corylus avellana HOM05D003436 ORTHO05D003674 2.5e-09 65.5 86 46.5
Dinv14293 Davidia involucrata HOM05D003436 ORTHO05D003674 2.5e-09 65.5 83 47.0
Lsat_1_v5_gn_8_75321 Lactuca sativa HOM05D003436 ORTHO05D003674 2.5e-09 65.5 89 49.4
Ca_05483_v3 Cicer arietinum L. HOM05D003436 ORTHO05D003674 3.3e-09 65.1 86 47.7
Sc19g0007020 Simmondsia chinensis HOM05D003436 ORTHO05D003674 3.3e-09 65.1 88 45.5
CAN.G1161.30 Capsicum annuum HOM05D003436 ORTHO05D003674 4.3e-09 64.7 73 50.7
DCAR_013554 Daucus carota HOM05D003436 ORTHO05D003674 4.3e-09 64.7 100 48.0
GSVIVG01033503001 Vitis vinifera HOM05D003436 ORTHO05D003674 4.3e-09 64.7 88 44.3
Aqoxy3G02738 Aquilegia oxysepala HOM05D003436 ORTHO05D003674 5.7e-09 64.3 62 59.7
Phvul.001G142000 Phaseolus vulgaris HOM05D003436 ORTHO05D003674 5.7e-09 64.3 81 48.1
Nitab4.5_0001538g0010 Nicotiana tabacum HOM05D003436 ORTHO05D003674 7.4e-09 63.9 80 47.5
Aqoxy6G00181 Aquilegia oxysepala HOM05D003436 ORTHO05D003674 9.7e-09 63.5 92 47.8
PSO017G1578 Papaver somniferum HOM05D003436 ORTHO05D003674 9.7e-09 63.5 55 67.3
arahy.Tifrunner.gnm1.ann1.6M6V4C Arachis hypogaea HOM05D003436 ORTHO05D003674 1.3e-08 63.2 55 61.8
Nitab4.5_0000105g0100 Nicotiana tabacum HOM05D003436 ORTHO05D003674 1.7e-08 62.8 80 48.8
Actinidia32389 Actinidia chinensis HOM05D003436 ORTHO05D003674 2.8e-08 62.0 89 48.3
Glyma.09G112100 Glycine max HOM05D003436 ORTHO05D003674 3.7e-08 61.6 68 51.5
vmacro07911 Vaccinium macrocarpon HOM05D003436 ORTHO05D003674 3.7e-08 61.6 87 46.0
HanXRQChr10g0300671 Helianthus annuus HOM05D003436 ORTHO05D003674 4.8e-08 61.2 88 47.7
Peaxi162Scf00003g04336 Petunia axillaris HOM05D003436 ORTHO05D003674 4.8e-08 61.2 89 49.4
PGSC0003DMG400011438 Solanum tuberosum HOM05D003436 ORTHO05D003674 6.3e-08 60.8 87 46.0
Sed0013894 Sechium edule HOM05D003436 ORTHO05D003674 1.1e-07 60.1 75 54.7
Solyc10g078770.2 Solanum lycopersicum HOM05D003436 ORTHO05D003674 1.1e-07 60.1 70 48.6
Sopen10g029390 Solanum pennellii HOM05D003436 ORTHO05D003674 1.1e-07 60.1 70 48.6
Nitab4.5_0000105g0080 Nicotiana tabacum HOM05D003436 ORTHO05D003674 1.8e-07 59.3 80 46.2
Cfa020173 Carpinus fangiana HOM05D003436 ORTHO05D003674 2.4e-07 58.9 80 47.5
Sc19g0007030 Simmondsia chinensis HOM05D003436 ORTHO05D003674 2.4e-07 58.9 68 50.0
Ah.13g075890 Amaranthus hybridus HOM05D003436 ORTHO05D003674 3.1e-07 58.5 76 47.4
PSO170G2585 Papaver somniferum HOM05D003436 ORTHO05D003674 3.1e-07 58.5 47 70.2
Cfa020175 Carpinus fangiana HOM05D003436 ORTHO05D003674 6.9e-07 57.4 90 43.3
Haze_19981 Corylus avellana HOM05D003436 ORTHO05D003674 6.9e-07 57.4 76 46.1
Manes.09G034800 Manihot esculenta HOM05D003436 ORTHO05D003674 1.5e-06 56.2 44 70.5
Cc06_g15970 Coffea canephora HOM05D003436 ORTHO05D003674 2.0e-06 55.8 80 48.8
Lsat_1_v5_gn_9_26540 Lactuca sativa HOM05D003436 ORTHO05D003674 4.5e-06 54.7 83 43.4


User provided reference genes

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