Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen10g029310 Solanum pennellii HOM05D004743 ORTHO05D005698 2.8e-85 318.5 160 100.0
PGSC0003DMG400011432 Solanum tuberosum HOM05D004743 ORTHO05D005698 1.8e-84 315.8 160 98.8
Solyc10g078690.3 Solanum lycopersicum HOM05D004743 ORTHO05D005698 5.4e-84 314.3 160 98.8
CAN.G1161.21 Capsicum annuum HOM05D004743 ORTHO05D005698 1.0e-79 300.1 159 93.7
Nitab4.5_0001538g0070 Nicotiana tabacum HOM05D004743 ORTHO05D005698 4.0e-79 298.1 160 90.6
Nitab4.5_0000991g0030 Nicotiana tabacum HOM05D004743 ORTHO05D005698 6.8e-79 297.4 160 90.6
Peaxi162Scf00003g04210 Petunia axillaris HOM05D004743 ORTHO05D005698 1.1e-76 290.0 160 87.5
CDE07G0719 Ceratophyllum demersum HOM05D004743 ORTHO05D005698 3.2e-68 261.9 153 82.4
Cc00_g14600 Coffea canephora HOM05D004743 ORTHO05D005698 3.2e-68 261.9 158 81.6
Sc13g0002130 Simmondsia chinensis HOM05D004743 ORTHO05D005698 3.2e-68 261.9 153 83.0
Rhsim03G0009100 Rhododendron simsii HOM05D004743 ORTHO05D005698 4.1e-68 261.5 153 82.4
Cc06_g22060 Coffea canephora HOM05D004743 ORTHO05D005698 7.0e-68 260.8 158 81.0
vmacro07935 Vaccinium macrocarpon HOM05D004743 ORTHO05D005698 7.0e-68 260.8 153 81.7
Thecc.05G168500 Theobroma cacao HOM05D004743 ORTHO05D005698 1.2e-67 260.0 157 77.1
COL.COLO4_36134 Corchorus olitorius HOM05D004743 ORTHO05D005698 1.6e-67 259.6 157 77.7
Gohir.A01G192000 Gossypium hirsutum HOM05D004743 ORTHO05D005698 3.5e-67 258.5 155 77.4
Gohir.D01G178000 Gossypium hirsutum HOM05D004743 ORTHO05D005698 3.5e-67 258.5 155 77.4
Gorai.002G225100 Gossypium raimondii HOM05D004743 ORTHO05D005698 3.5e-67 258.5 155 77.4
TAR623G0239 Trochodendron aralioides HOM05D004743 ORTHO05D005698 3.5e-67 258.5 153 80.4
Gohir.A09G126700 Gossypium hirsutum HOM05D004743 ORTHO05D005698 7.8e-67 257.3 158 76.6
Gorai.006G141500 Gossypium raimondii HOM05D004743 ORTHO05D005698 7.8e-67 257.3 153 78.4
RcHm_v2.0_Chr3g0480261 Rosa chinensis HOM05D004743 ORTHO05D005698 7.8e-67 257.3 157 78.3
Cpa.g.sc85.89 Carica papaya HOM05D004743 ORTHO05D005698 1.0e-66 256.9 157 77.7
Dinv14277 Davidia involucrata HOM05D004743 ORTHO05D005698 1.0e-66 256.9 153 78.4
Gohir.D09G123248 Gossypium hirsutum HOM05D004743 ORTHO05D005698 1.7e-66 256.1 153 77.8
CSS0027207 Camellia sinensis var. sinensis HOM05D004743 ORTHO05D005698 3.0e-66 255.4 153 79.7
CSS0048559 Camellia sinensis var. sinensis HOM05D004743 ORTHO05D005698 3.0e-66 255.4 153 79.7
Haze_19962 Corylus avellana HOM05D004743 ORTHO05D005698 3.0e-66 255.4 158 79.1
FvH4_6g22680 Fragaria vesca HOM05D004743 ORTHO05D005698 3.9e-66 255.0 157 77.1
FAN02G0944 Fragaria x ananassa HOM05D004743 ORTHO05D005698 3.9e-66 255.0 157 77.1
FAN05G2002 Fragaria x ananassa HOM05D004743 ORTHO05D005698 3.9e-66 255.0 157 77.1
FAN09G0554 Fragaria x ananassa HOM05D004743 ORTHO05D005698 3.9e-66 255.0 157 77.1
FAN14G2026 Fragaria x ananassa HOM05D004743 ORTHO05D005698 3.9e-66 255.0 157 77.1
FAN14G4474 Fragaria x ananassa HOM05D004743 ORTHO05D005698 3.9e-66 255.0 157 77.1
Manes.09G032100 Manihot esculenta HOM05D004743 ORTHO05D005698 3.9e-66 255.0 157 76.4
Potri.006G059300 Populus trichocarpa HOM05D004743 ORTHO05D005698 3.9e-66 255.0 157 76.4
Lju124A30G9 Lonicera japonica HOM05D004743 ORTHO05D005698 5.0e-66 254.6 153 79.7
Manes.08G045000 Manihot esculenta HOM05D004743 ORTHO05D005698 5.0e-66 254.6 157 76.4
Hund19191 Selenicereus undatus HOM05D004743 ORTHO05D005698 5.0e-66 254.6 156 78.2
TAR633G2476 Trochodendron aralioides HOM05D004743 ORTHO05D005698 6.6e-66 254.2 153 79.1
Duzib106G0699 Durio zibethinus HOM05D004743 ORTHO05D005698 8.6e-66 253.8 153 78.4
MSTRG.19893 Avicennia marina HOM05D004743 ORTHO05D005698 1.1e-65 253.4 150 81.3
THA.LOC104824464 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 1.5e-65 253.1 157 77.7
MD12G1061000 Malus domestica HOM05D004743 ORTHO05D005698 1.9e-65 252.7 157 77.1
MD14G1060700 Malus domestica HOM05D004743 ORTHO05D005698 1.9e-65 252.7 157 77.7
Ciclev10012973m.g Citrus clementina HOM05D004743 ORTHO05D005698 2.5e-65 252.3 157 77.1
Prupe.7G073800 Prunus persica HOM05D004743 ORTHO05D005698 2.5e-65 252.3 157 76.4
Actinidia09383 Actinidia chinensis HOM05D000570 ORTHO05D005344 3.3e-65 251.9 153 79.7
TAR633G1605 Trochodendron aralioides HOM05D004743 ORTHO05D005698 3.3e-65 251.9 153 79.1
HanXRQChr10g0295691 Helianthus annuus HOM05D004743 ORTHO05D005698 1.6e-64 249.6 156 77.6
SGA_v2.0_scaffold69G23079 Striga asiatica HOM05D004743 ORTHO05D005698 1.6e-64 249.6 158 76.6
CiPaw.10G028000 Carya illinoinensis HOM05D004743 ORTHO05D005698 2.8e-64 248.8 158 76.6
Sed0004669 Sechium edule HOM05D004743 ORTHO05D005698 2.8e-64 248.8 158 77.2
EL10Ac3g06947 Beta vulgaris HOM05D004743 ORTHO05D005698 3.6e-64 248.4 153 77.1
Aa31LG1G24060 Aethionema arabicum HOM05D004743 ORTHO05D005698 4.7e-64 248.1 154 79.2
Oeu033746.1 Olea europaea HOM05D004743 ORTHO05D005698 4.7e-64 248.1 153 76.5
Aqoxy2G00062 Aquilegia oxysepala HOM05D004743 ORTHO05D005698 1.1e-63 246.9 153 77.8
HanXRQChr15g0491311 Helianthus annuus HOM05D004743 ORTHO05D005698 1.4e-63 246.5 156 76.9
Sp4g24390 Schrenkiella parvula HOM05D004743 ORTHO05D005698 1.4e-63 246.5 157 75.2
Sed0015240 Sechium edule HOM05D004743 ORTHO05D005698 1.4e-63 246.5 153 77.1
CDE04G2796 Ceratophyllum demersum HOM05D004743 ORTHO05D005698 1.8e-63 246.1 138 85.5
DCAR_013558 Daucus carota HOM05D004743 ORTHO05D005698 1.8e-63 246.1 153 77.1
AUR62024326 Chenopodium quinoa HOM05D004743 ORTHO05D005698 2.3e-63 245.7 151 77.5
Thhalv10017352m.g Eutrema salsugineum HOM05D004743 ORTHO05D005698 2.3e-63 245.7 157 75.8
Aa31LG10G12610 Aethionema arabicum HOM05D004743 ORTHO05D005698 4.0e-63 245.0 157 76.4
CARHR137250 Cardamine hirsuta HOM05D004743 ORTHO05D005698 4.0e-63 245.0 157 75.2
CsaV3_3G039010 Cucumis sativus L. HOM05D004743 ORTHO05D005698 4.0e-63 245.0 153 77.1
PGR142G2650 Punica granatum HOM05D004743 ORTHO05D005698 4.0e-63 245.0 158 73.4
MBI04_g27127_MAGBIO Magnolia biondii HOM05D004743 ORTHO05D005698 5.2e-63 244.6 153 76.5
MELO3C009644.2 Cucumis melo HOM05D004743 ORTHO05D005698 6.8e-63 244.2 153 77.1
CANSAT64G2667 Cannabis sativa HOM05D004743 ORTHO05D005698 8.9e-63 243.8 153 76.5
AUR62012065 Chenopodium quinoa HOM05D004743 ORTHO05D005698 2.0e-62 242.7 151 76.8
ECA247G0571 Erigeron canadensis HOM05D004743 ORTHO05D005698 2.0e-62 242.7 158 75.9
Thhalv10006285m.g Eutrema salsugineum HOM05D004743 ORTHO05D005698 2.0e-62 242.7 157 73.2
Hma1.2p1_0005F.1_g004310 Hydrangea macrophylla HOM05D004743 ORTHO05D005698 2.0e-62 242.7 153 75.2
Sp5g04820 Schrenkiella parvula HOM05D004743 ORTHO05D005698 2.0e-62 242.7 157 73.2
AT2G42210 Arabidopsis thaliana HOM05D004743 ORTHO05D005698 2.6e-62 242.3 157 74.5
VMungo1383G0120 Vigna mungo HOM05D004743 ORTHO05D005698 9.8e-62 240.4 155 75.5
Lsat_1_v5_gn_9_28001 Lactuca sativa HOM05D004743 ORTHO05D005698 1.3e-61 240.0 158 74.7
PSO339G6088 Papaver somniferum HOM05D004743 ORTHO05D005698 1.3e-61 240.0 153 77.1
PSO384G3106 Papaver somniferum HOM05D004743 ORTHO05D005698 1.3e-61 240.0 153 77.1
AL4G40570 Arabidopsis lyrata HOM05D004743 ORTHO05D005698 1.7e-61 239.6 157 73.2
Duzib128G1008 Durio zibethinus HOM05D004743 ORTHO05D005698 1.7e-61 239.6 153 73.9
BcaC02g12469 Brassica carinata HOM05D004743 ORTHO05D005698 2.2e-61 239.2 158 74.1
BcaNung04402 Brassica carinata HOM05D004743 ORTHO05D005698 2.2e-61 239.2 158 74.1
A05p02780 Brassica napus HOM05D004743 ORTHO05D005698 2.2e-61 239.2 158 74.1
C04p03370 Brassica napus HOM05D004743 ORTHO05D005698 2.2e-61 239.2 158 74.1
BraA05t19270Z Brassica rapa HOM05D004743 ORTHO05D005698 2.2e-61 239.2 158 74.1
Phvul.001G140800 Phaseolus vulgaris HOM05D004743 ORTHO05D005698 6.4e-61 237.7 159 73.0
BcaB06g29229 Brassica carinata HOM05D004743 ORTHO05D005698 1.4e-60 236.5 149 75.8
ATR0605G135 Amborella trichopoda HOM05D004743 ORTHO05D005698 1.9e-60 236.1 152 71.7
Carub.0004s2455 Capsella rubella HOM05D004743 ORTHO05D005698 1.9e-60 236.1 157 72.6
GSVIVG01033524001 Vitis vinifera HOM05D004743 ORTHO05D005698 2.4e-60 235.7 158 70.9
Glyma.19G145900 Glycine max HOM05D004743 ORTHO05D005698 3.2e-60 235.3 159 72.3
A04p32050 Brassica napus HOM05D004743 ORTHO05D005698 5.4e-60 234.6 149 75.2
Lj1g0027895 Lotus japonicus HOM05D004743 ORTHO05D005344 5.4e-60 234.6 151 74.8
BcaC02g07257 Brassica carinata HOM05D004743 ORTHO05D005698 7.0e-60 234.2 148 75.7
C04p69570 Brassica napus HOM05D004743 ORTHO05D005698 7.0e-60 234.2 148 75.7
BolC4t28455H Brassica oleracea HOM05D004743 ORTHO05D005698 7.0e-60 234.2 148 75.7
BraA04t18662Z Brassica rapa HOM05D004743 ORTHO05D005698 1.2e-59 233.4 149 74.5
Glyma.03G142900 Glycine max HOM05D004743 ORTHO05D005698 1.6e-59 233.0 155 72.9
Migut.J01816 Erythranthe guttata HOM05D004743 ORTHO05D005698 3.5e-59 231.9 153 70.6
Ca_08506_v3 Cicer arietinum L. HOM05D004743 ORTHO05D005698 6.0e-59 231.1 153 73.2
Ah.13g076070 Amaranthus hybridus HOM05D004743 ORTHO05D005698 1.0e-58 230.3 153 74.5
arahy.Tifrunner.gnm1.ann1.2GY28N Arachis hypogaea HOM05D000570 ORTHO05D005344 1.7e-58 229.6 157 72.0
arahy.Tifrunner.gnm1.ann1.CB7VX4 Arachis hypogaea HOM05D004743 ORTHO05D005344 1.7e-58 229.6 157 72.0
Lalb_Chr04g0259631 Lupinus albus HOM05D004743 ORTHO05D005698 1.7e-58 229.6 153 71.9
Lalb_Chr18g0047741 Lupinus albus HOM05D004743 ORTHO05D005698 1.5e-57 226.5 138 77.5
Sabra06G0042700 Salix brachista HOM05D004743 ORTHO05D005698 1.9e-57 226.1 206 56.8
Psat3g069720 Pisum sativum HOM05D004743 ORTHO05D005698 2.8e-56 222.2 153 69.9
THA.LOC104802456 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 4.0e-55 218.4 142 74.6
unitig_749.g14140 Utricularia gibba HOM05D004743 ORTHO05D005698 5.2e-55 218.0 150 68.7
Atru.chr8.1050 Acer truncatum HOM05D004743 ORTHO05D005698 8.9e-55 217.2 124 81.5
Cfa016899 Carpinus fangiana HOM05D006381 ORTHO05D008523 5.8e-54 214.5 134 77.6
HPP92_001833 Vanilla planifolia HOM05D004743 ORTHO05D005698 9.9e-54 213.8 153 68.0
ClCG10G017380 Citrullus lanatus HOM05D004743 ORTHO05D005698 6.4e-53 211.1 243 50.2
Os02g0717300 Oryza sativa ssp. japonica HOM05D004743 ORTHO05D005698 1.9e-52 209.5 144 68.1
Nn7g36049 Nelumbo nucifera HOM05D004743 ORTHO05D005698 2.4e-52 209.1 169 65.7
Zm00001eb252780 Zea mays HOM05D004743 ORTHO05D005698 9.2e-52 207.2 144 68.1
TWI77G0677 Tripterygium wilfordii HOM05D004743 ORTHO05D005698 4.6e-51 204.9 160 65.0
SalBow6G0397 Salvia bowleyana HOM05D004743 ORTHO05D005698 1.4e-47 193.4 183 55.7
SEGI_22128 Sequoiadendron giganteum HOM05D004743 ORTHO05D005698 1.8e-47 193.0 154 61.0
unitig_26.g9039 Utricularia gibba HOM05D004743 ORTHO05D005698 5.2e-47 191.4 206 50.0
TWI53G0547 Tripterygium wilfordii HOM05D004743 ORTHO05D005698 1.2e-46 190.3 161 59.0
Oeu008114.1 Olea europaea HOM05D004743 ORTHO05D005698 8.4e-45 184.1 298 39.6
QL07p023149 Quercus lobata HOM05D004743 ORTHO05D005698 3.2e-44 182.2 109 78.9
TPR.G13232 Trifolium pratense HOM05D004743 ORTHO05D005698 2.7e-43 179.1 111 72.1
Hund19190 Selenicereus undatus HOM05D004743 ORTHO05D005698 2.1e-40 169.5 141 61.7
C04p16200 Brassica napus HOM05D004743 ORTHO05D005698 6.0e-35 151.4 133 57.1
BolC4t21974H Brassica oleracea HOM05D004743 ORTHO05D005698 7.8e-35 151.0 99 75.8
CiPaw.09G032100 Carya illinoinensis HOM05D004743 ORTHO05D005698 1.3e-34 150.2 93 79.6
Eucgr.A02439 Eucalyptus grandis HOM05D004743 ORTHO05D005698 8.1e-32 141.0 111 63.1
Mapoly0011s0060 Marchantia polymorpha HOM05D004743 ORTHO05D005698 1.1e-31 140.6 153 47.7
THA.LOC104824466 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 5.8e-30 134.8 121 60.3
Pp3c5_22310 Physcomitrium patens HOM05D004743 ORTHO05D005698 7.6e-30 134.4 145 49.7
Pp3c6_9862 Physcomitrium patens HOM05D004743 ORTHO05D005698 1.7e-29 133.3 145 49.0
C04p16220 Brassica napus HOM05D004743 ORTHO05D005698 2.4e-28 129.4 77 76.6
CBR_g32607 Chara braunii HOM05D004743 ORTHO05D005698 7.1e-28 127.9 151 45.0
BcaC03g17937 Brassica carinata HOM05D004743 ORTHO05D005698 7.9e-27 124.4 145 52.4
Os09g0279300 Oryza sativa ssp. japonica HOM05D004743 ORTHO05D005698 3.9e-26 122.1 128 46.9
AagrBONN_evm.TU.Sc2ySwM_362.1495 Anthoceros agrestis HOM05D004743 ORTHO05D005698 1.1e-25 120.6 139 43.9
arahy.Tifrunner.gnm1.ann1.MK9Y65 Arachis hypogaea HOM05D004743 ORTHO05D005698 1.1e-23 114.0 80 68.8
arahy.Tifrunner.gnm1.ann1.W4Y9B5 Arachis hypogaea HOM05D004743 ORTHO05D005698 1.1e-23 114.0 80 68.8
C09p44920 Brassica napus HOM05D004743 ORTHO05D005698 3.1e-23 112.5 84 64.3
arahy.Tifrunner.gnm1.ann1.GN7FJD Arachis hypogaea HOM05D004743 ORTHO05D005698 9.0e-23 110.9 65 76.9
arahy.Tifrunner.gnm1.ann1.YRY7W4 Arachis hypogaea HOM05D004743 ORTHO05D005698 1.2e-22 110.5 65 76.9
arahy.Tifrunner.gnm1.ann1.HF75RM Arachis hypogaea HOM05D004743 ORTHO05D005698 2.2e-21 106.3 64 76.6
Zm00001eb308440 Zea mays HOM05D004743 ORTHO05D005698 1.4e-20 103.6 133 42.9
arahy.Tifrunner.gnm1.ann1.L5I9G2 Arachis hypogaea HOM05D004743 ORTHO05D005698 3.2e-20 102.4 64 73.4
C02p59940 Brassica napus HOM05D004743 ORTHO05D005698 2.1e-19 99.8 101 57.4
BcaC04g22765 Brassica carinata HOM05D004743 ORTHO05D005698 5.1e-18 95.1 77 64.9
arahy.Tifrunner.gnm1.ann1.1ZE97X Arachis hypogaea HOM05D004743 ORTHO05D005698 5.1e-10 68.6 53 64.2
arahy.Tifrunner.gnm1.ann1.JW2HXV Arachis hypogaea HOM05D004743 ORTHO05D005698 1.5e-09 67.0 53 62.3
PSO063G6118 Papaver somniferum HOM05D004743 ORTHO05D005698 3.7e-08 62.4 62 54.8


User provided reference genes

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