Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen10g029140 Solanum pennellii HOM05D004406 ORTHO05D005660 1.9e-286 988.4 483 100.0
PGSC0003DMG400008359 Solanum tuberosum HOM05D004406 ORTHO05D005660 1.8e-284 981.9 483 99.4
Solyc10g078480.2 Solanum lycopersicum HOM05D004406 ORTHO05D005660 3.1e-284 981.1 483 99.4
CAN.G960.55 Capsicum annuum HOM05D004406 ORTHO05D005660 1.1e-262 909.4 475 93.7
Peaxi162Scf00003g04835 Petunia axillaris HOM05D004406 ORTHO05D005660 1.6e-261 905.6 475 92.4
Nitab4.5_0006279g0030 Nicotiana tabacum HOM05D004406 ORTHO05D005660 1.1e-252 876.3 485 89.7
Nitab4.5_0000812g0150 Nicotiana tabacum HOM05D004406 ORTHO05D005660 6.5e-234 813.9 480 85.2
Lj1C808G13 Lonicera japonica HOM05D004406 ORTHO05D005660 1.2e-219 766.5 479 79.1
Dinv26661 Davidia involucrata HOM05D004406 ORTHO05D005660 1.9e-217 759.2 485 76.5
CSS0020755 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 4.2e-217 758.1 479 77.2
MSTRG.6706 Avicennia marina HOM05D004406 ORTHO05D005660 2.8e-213 745.3 472 76.3
Actinidia18837 Actinidia chinensis HOM05D004406 ORTHO05D005660 2.4e-212 742.3 479 76.6
TAR376G0792 Trochodendron aralioides HOM05D004406 ORTHO05D005660 3.5e-211 738.4 485 73.6
FvH4_3g16570 Fragaria vesca HOM05D004406 ORTHO05D005660 7.7e-211 737.3 470 75.1
Cc05_g10180 Coffea canephora HOM05D004406 ORTHO05D005660 1.0e-210 736.9 477 74.0
HanXRQChr11g0329941 Helianthus annuus HOM05D004406 ORTHO05D005660 1.5e-209 733.0 472 76.3
Prupe.4G148400 Prunus persica HOM05D004406 ORTHO05D005660 1.9e-209 732.6 470 74.9
COL.COLO4_35795 Corchorus olitorius HOM05D004406 ORTHO05D005660 4.2e-209 731.5 466 75.8
FAN11G0596 Fragaria x ananassa HOM05D004406 ORTHO05D005660 4.2e-209 731.5 465 75.1
FAN25G0744 Fragaria x ananassa HOM05D004406 ORTHO05D005660 1.6e-208 729.6 468 74.6
Ca_03669_v3 Cicer arietinum L. HOM05D004406 ORTHO05D005660 3.6e-208 728.4 465 75.7
ECA236G4460 Erigeron canadensis HOM05D004406 ORTHO05D005660 3.6e-208 728.4 485 74.2
Migut.M00660 Erythranthe guttata HOM05D004406 ORTHO05D005660 1.8e-207 726.1 468 75.4
Oeu002771.1 Olea europaea HOM05D004406 ORTHO05D005660 1.8e-207 726.1 458 77.5
FAN21G0297 Fragaria x ananassa HOM05D004406 ORTHO05D005660 2.3e-207 725.7 468 73.7
RcHm_v2.0_Chr5g0027601 Rosa chinensis HOM05D004406 ORTHO05D005660 2.3e-207 725.7 470 74.9
Thecc.01G135800 Theobroma cacao HOM05D004406 ORTHO05D005660 4.0e-207 724.9 470 74.5
Manes.10G061001 Manihot esculenta HOM05D004406 ORTHO05D005660 5.2e-207 724.5 467 75.6
Nn5g30617 Nelumbo nucifera HOM05D004406 ORTHO05D005660 2.6e-206 722.2 482 73.0
TWI38G2065 Tripterygium wilfordii HOM05D004406 ORTHO05D005660 9.8e-206 720.3 477 72.5
Cfa019935 Carpinus fangiana HOM05D004406 ORTHO05D005660 1.7e-205 719.5 473 74.2
Lj3g0010925 Lotus japonicus HOM05D004406 ORTHO05D005660 3.7e-205 718.4 467 74.9
MD05G1209100 Malus domestica HOM05D004406 ORTHO05D005660 4.9e-205 718.0 476 73.3
GSVIVG01009332001 Vitis vinifera HOM05D004406 ORTHO05D005660 4.9e-205 718.0 482 72.6
Medtr2g069330 Medicago truncatula HOM05D004406 ORTHO05D005660 6.3e-205 717.6 479 72.0
Gorai.007G217900 Gossypium raimondii HOM05D004406 ORTHO05D005660 1.1e-204 716.8 470 73.6
Oeu044427.1 Olea europaea HOM05D004406 ORTHO05D005660 1.8e-204 716.1 549 66.5
arahy.Tifrunner.gnm1.ann1.L0EV17 Arachis hypogaea HOM05D004406 ORTHO05D005660 4.1e-204 714.9 467 74.3
Gohir.D11G203200 Gossypium hirsutum HOM05D004406 ORTHO05D005660 5.4e-204 714.5 470 73.6
Aqoxy6G02573 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 7.0e-204 714.1 466 73.0
Cpa.g.sc132.61 Carica papaya HOM05D004406 ORTHO05D005660 9.2e-204 713.8 479 73.3
CiPaw.01G106500 Carya illinoinensis HOM05D004406 ORTHO05D005660 7.8e-203 710.7 480 73.3
Glyma.15G256700 Glycine max HOM05D004406 ORTHO05D005660 8.6e-202 707.2 478 72.6
Ciclev10001005m.g Citrus clementina HOM05D004406 ORTHO05D005660 1.1e-201 706.8 472 73.3
Eucgr.F01412 Eucalyptus grandis HOM05D004406 ORTHO05D005660 1.1e-201 706.8 466 72.5
Hund02309 Selenicereus undatus HOM05D004406 ORTHO05D005660 1.1e-201 706.8 471 73.0
Psat1g012120 Pisum sativum HOM05D004406 ORTHO05D005660 1.5e-201 706.4 467 72.8
TAR628G1650 Trochodendron aralioides HOM05D004406 ORTHO05D005660 1.5e-201 706.4 469 72.9
Lalb_Chr25g0284911 Lupinus albus HOM05D004406 ORTHO05D005660 2.5e-201 705.7 467 73.0
Gohir.A11G220400 Gossypium hirsutum HOM05D004406 ORTHO05D005660 4.3e-201 704.9 470 72.6
MD10G1195500 Malus domestica HOM05D004406 ORTHO05D005660 4.3e-201 704.9 457 74.8
Potri.001G394300 Populus trichocarpa HOM05D004406 ORTHO05D005660 4.3e-201 704.9 470 73.2
VMungo1080G1685 Vigna mungo HOM05D004406 ORTHO05D005660 9.5e-201 703.7 480 71.7
Phvul.005G057900 Phaseolus vulgaris HOM05D004406 ORTHO05D005660 2.1e-200 702.6 481 72.1
Sc03g0007790 Simmondsia chinensis HOM05D004406 ORTHO05D005660 2.1e-200 702.6 473 73.2
Aqoxy6G03019 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 1.8e-199 699.5 466 71.7
unitig_62.g23080 Utricularia gibba HOM05D004406 ORTHO05D005660 4.0e-199 698.4 472 73.1
Atru.chr9.1518 Acer truncatum HOM05D004406 ORTHO05D005660 8.9e-199 697.2 465 73.1
CANSAT25G0941 Cannabis sativa HOM05D004406 ORTHO05D005660 3.7e-197 691.8 491 71.1
EL10Ac9g22869 Beta vulgaris HOM05D004406 ORTHO05D005660 4.6e-195 684.9 468 70.9
PSO170G0587 Papaver somniferum HOM05D004406 ORTHO05D005660 1.9e-193 679.5 467 71.1
PSO528G0243 Papaver somniferum HOM05D004406 ORTHO05D005660 4.3e-193 678.3 467 70.7
Dinv13306 Davidia involucrata HOM05D004406 ORTHO05D005660 1.6e-192 676.4 434 76.3
vmacro15158 Vaccinium macrocarpon HOM05D004406 ORTHO05D005660 2.8e-192 675.6 439 73.3
vmacro12019 Vaccinium macrocarpon HOM05D004406 ORTHO05D005660 1.8e-191 672.9 450 71.8
arahy.Tifrunner.gnm1.ann1.BTSV3Q Arachis hypogaea HOM05D004406 ORTHO05D005660 5.2e-191 671.4 467 71.5
Sed0020103 Sechium edule HOM05D004406 ORTHO05D005660 1.5e-190 669.8 466 71.0
QL04p076605 Quercus lobata HOM05D004406 ORTHO05D005660 1.3e-189 666.8 432 75.7
PGR004G1399 Punica granatum HOM05D004406 ORTHO05D005660 2.4e-188 662.5 467 70.0
ATR0739G109 Amborella trichopoda HOM05D004406 ORTHO05D005660 3.2e-188 662.1 465 69.0
SGA_v2.0_scaffold73G24357 Striga asiatica HOM05D004406 ORTHO05D005660 6.0e-187 657.9 472 69.5
Haze_15516 Corylus avellana HOM05D004406 ORTHO05D005660 2.3e-186 656.0 479 68.7
Duzib187G2008 Durio zibethinus HOM05D004406 ORTHO05D005660 1.6e-184 649.8 467 68.5
CsaV3_5G023450 Cucumis sativus L. HOM05D004406 ORTHO05D005660 2.1e-184 649.4 473 69.1
DCAR_013800 Daucus carota HOM05D004406 ORTHO05D005660 6.8e-183 644.4 486 68.7
FAN16G0888 Fragaria x ananassa HOM05D004406 ORTHO05D005660 1.2e-182 643.7 465 68.6
A06p12560 Brassica napus HOM05D004406 ORTHO05D005660 2.6e-182 642.5 463 68.9
MELO3C022781.2 Cucumis melo HOM05D004406 ORTHO05D005660 2.6e-182 642.5 474 68.4
BolC5t30202H Brassica oleracea HOM05D004406 ORTHO05D005660 5.8e-182 641.3 465 69.0
ClCG03G009170 Citrullus lanatus HOM05D004406 ORTHO05D005660 5.8e-182 641.3 465 68.8
C05p14870 Brassica napus HOM05D004406 ORTHO05D005660 7.5e-182 641.0 470 68.5
AL1G28740 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 1.3e-181 640.2 466 68.9
BraA06t24419Z Brassica rapa HOM05D004406 ORTHO05D005660 6.4e-181 637.9 463 68.5
Aa31LG7G1110 Aethionema arabicum HOM05D004406 ORTHO05D005660 1.4e-180 636.7 463 68.9
CARHR017050 Cardamine hirsuta HOM05D004406 ORTHO05D005660 1.9e-180 636.3 465 68.6
Aqoxy113s002 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 3.2e-180 635.6 411 73.0
AT1G16570 Arabidopsis thaliana HOM05D004406 ORTHO05D005660 3.2e-180 635.6 465 68.2
SalBow5G0012 Salvia bowleyana HOM05D004406 ORTHO05D005660 5.4e-180 634.8 526 64.1
AUR62017618 Chenopodium quinoa HOM05D004406 ORTHO05D005660 7.1e-180 634.4 422 72.3
THA.LOC104808122 Tarenaya hassleriana HOM05D004406 ORTHO05D005660 9.2e-180 634.0 467 68.1
Thhalv10007520m.g Eutrema salsugineum HOM05D004406 ORTHO05D005660 2.1e-179 632.9 472 67.4
CDE06G1959 Ceratophyllum demersum HOM05D004406 ORTHO05D005660 2.7e-179 632.5 498 64.9
C08p44420 Brassica napus HOM05D004406 ORTHO05D005660 7.8e-179 630.9 465 68.8
Sp1g14730 Schrenkiella parvula HOM05D004406 ORTHO05D005660 1.3e-178 630.2 474 67.7
A09p60830 Brassica napus HOM05D004406 ORTHO05D005660 3.9e-178 628.6 470 67.9
BraA09t41456Z Brassica rapa HOM05D004406 ORTHO05D005660 3.9e-178 628.6 470 67.9
Carub.0001s1633 Capsella rubella HOM05D004406 ORTHO05D005660 6.6e-178 627.9 466 67.6
BolC8t51983H Brassica oleracea HOM05D004406 ORTHO05D005660 3.3e-177 625.5 464 68.3
SEGI_06613 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 2.8e-176 622.5 511 60.5
Zm00001eb401770 Zea mays HOM05D004406 ORTHO05D005660 2.8e-176 622.5 466 66.7
Os03g0180700 Oryza sativa ssp. japonica HOM05D004406 ORTHO05D005660 3.6e-176 622.1 466 66.5
HPP92_025666 Vanilla planifolia HOM05D004406 ORTHO05D005660 9.9e-174 614.0 468 65.4
BcaC05g25520 Brassica carinata HOM05D004406 ORTHO05D005660 1.7e-170 603.2 447 67.6
Gohir.A09G004700 Gossypium hirsutum HOM05D004406 ORTHO05D005660 5.1e-170 601.7 470 65.3
Glyma.08G170200 Glycine max HOM05D004406 ORTHO05D005660 6.2e-168 594.7 413 70.0
Lsat_1_v5_gn_7_99701 Lactuca sativa HOM05D004406 ORTHO05D005660 7.6e-166 587.8 465 66.5
SalBow5G1666 Salvia bowleyana HOM05D004406 ORTHO05D005660 9.9e-166 587.4 403 73.0
TPR.G9754 Trifolium pratense HOM05D004406 ORTHO05D005660 1.6e-160 570.1 365 74.8
Rhsim06G0184400 Rhododendron simsii HOM05D004406 ORTHO05D005660 9.0e-159 564.3 479 63.5
CDE04G2964 Ceratophyllum demersum HOM05D004406 ORTHO05D005660 2.2e-157 559.7 486 59.7
Mapoly0116s0013 Marchantia polymorpha HOM05D004406 ORTHO05D005660 8.7e-154 547.7 509 56.8
FAN21G3885 Fragaria x ananassa HOM05D004406 ORTHO05D005660 4.3e-153 545.4 350 73.4
AL6G51100 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 2.9e-149 532.7 463 62.0
Actinidia35181 Actinidia chinensis HOM05D004406 ORTHO05D005660 3.2e-148 529.3 476 59.2
Pp3c22_7820 Physcomitrium patens HOM05D004406 ORTHO05D005660 7.9e-147 524.6 488 55.3
Gohir.A11G222401 Gossypium hirsutum HOM05D004406 ORTHO05D005660 3.3e-145 519.2 363 69.1
SMO353G0172 Selaginella moellendorffii HOM05D004406 ORTHO05D005660 1.4e-143 513.8 467 58.2
AagrBONN_evm.TU.Sc2ySwM_362.1435 Anthoceros agrestis HOM05D004406 ORTHO05D005660 5.0e-133 478.8 463 53.1
CBR_g37525 Chara braunii HOM05D004406 ORTHO05D005660 2.4e-127 459.9 543 45.7
Gorai.006G005600 Gossypium raimondii HOM05D004406 ORTHO05D005660 1.1e-116 424.5 468 50.0
Sabra16G0258600 Salix brachista HOM05D004406 ORTHO05D005660 2.5e-108 396.7 266 69.9
Gorai.007G217600 Gossypium raimondii HOM05D004406 ORTHO05D005660 2.0e-105 387.1 329 64.1
PSO017G0585 Papaver somniferum HOM05D004406 ORTHO05D005660 2.8e-104 383.3 306 61.8
Rhsim08G0107400 Rhododendron simsii HOM05D004406 ORTHO05D005660 6.8e-98 362.1 228 78.1
MCO08G055 Micromonas commoda HOM05D004406 ORTHO05D005660 7.0e-95 352.1 478 44.1
Cre12.g516550 Chlamydomonas reinhardtii HOM05D004406 ORTHO05D005660 4.1e-87 326.2 382 45.8
Gohir.D11G203050 Gossypium hirsutum HOM05D004406 ORTHO05D005660 1.6e-83 314.3 287 62.7
SHI18054 Sapria himalayana HOM05D004406 ORTHO05D005660 5.4e-79 299.3 268 59.3
SEGI_11739 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 2.5e-76 290.4 201 69.2
Haze_26719 Corylus avellana HOM05D004406 ORTHO05D005660 7.3e-76 288.9 489 36.6
SEGI_33737 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 3.9e-69 266.5 272 50.0
Cfa025278 Carpinus fangiana HOM05D004406 ORTHO05D005660 1.2e-65 255.0 460 36.7
SGA_v2.0_scaffold181G39778 Striga asiatica HOM05D004406 ORTHO05D005660 2.0e-65 254.2 453 38.9
PRCOL_00002569 Prasinoderma coloniale HOM05D004406 ORTHO05D005660 4.4e-65 253.1 508 34.4
CSS0001722 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 2.2e-64 250.8 248 58.1
AL6G51070 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 1.1e-52 211.8 181 61.9
CSS0016238 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 6.2e-51 206.1 111 83.8
CSS0034423 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 6.9e-50 202.6 111 82.0
CSS0034904 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 1.5e-49 201.4 111 82.9
FAN04G0447 Fragaria x ananassa HOM05D004406 ORTHO05D005660 7.6e-49 199.1 174 58.6
Zm00001eb421280 Zea mays HOM05D004406 ORTHO05D005660 7.1e-47 192.6 206 51.0
Zm00001eb023770 Zea mays HOM05D003078 ORTHO05D003545 4.6e-46 189.9 198 52.0
Actinidia18838 Actinidia chinensis HOM05D004406 ORTHO05D005660 1.6e-43 181.4 175 57.1
SHI18055 Sapria himalayana HOM05D004406 ORTHO05D005660 3.6e-43 180.3 199 51.3
CSS0028761 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 1.3e-40 171.8 111 72.1
Os06g0564800 Oryza sativa ssp. japonica HOM05D004406 ORTHO05D005660 3.2e-39 167.2 107 73.8
TPR.G22508 Trifolium pratense HOM05D004406 ORTHO05D005660 3.3e-36 157.1 118 66.1
Zm00001eb180660 Zea mays HOM05D004406 ORTHO05D000467 1.3e-35 155.2 125 62.4
Zm00001eb049380 Zea mays HOM05D004406 ORTHO05D005660 3.8e-32 143.7 116 60.3
Zm00001eb005970 Zea mays HOM05D004406 ORTHO05D005660 8.4e-32 142.5 122 59.0
Zm00001eb307610 Zea mays HOM05D004406 ORTHO05D005660 3.3e-28 130.6 92 67.4
Actinidia18841 Actinidia chinensis HOM05D004406 ORTHO05D005660 2.1e-27 127.9 67 89.6
Actinidia18840 Actinidia chinensis HOM05D004406 ORTHO05D005660 1.4e-26 125.2 199 39.7
Haze_08535 Corylus avellana HOM05D004406 ORTHO05D005660 1.1e-20 105.5 125 49.6
Lj3g0015683 Lotus japonicus HOM05D004406 ORTHO05D036510 6.9e-18 96.3 62 72.6
Hma1.2p1_0035F.1_g022190 Hydrangea macrophylla HOM05D004406 ORTHO05D005660 8.8e-13 79.3 58 67.2
C02p50710 Brassica napus HOM05D004406 ORTHO05D005660 9.7e-12 75.9 49 73.5
Gohir.D11G203250 Gossypium hirsutum HOM05D004406 ORTHO05D012367 2.0e-09 68.2 46 60.9
SEGI_01378 Sequoiadendron giganteum HOM05D000678 ORTHO05D001709 4.5e-09 67.0 42 76.2
DCAR_010031 Daucus carota HOM05D000781 ORTHO05D012367 8.5e-08 62.8 45 66.7
vmacro15157 Vaccinium macrocarpon HOM05D004406 ORTHO05D036510 9.4e-07 59.3 48 66.7
vmacro12020 Vaccinium macrocarpon HOM05D004406 ORTHO05D036510 2.7e-06 57.8 44 65.9


User provided reference genes

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