Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen10g028810 Solanum pennellii HOM05D004369 ORTHO05D004907 6.6e-111 404.1 206 100.0
Solyc10g077130.1 Solanum lycopersicum HOM05D004369 ORTHO05D004907 3.1e-108 395.2 206 98.1
PGSC0003DMG400007200 Solanum tuberosum HOM05D004369 ORTHO05D004907 2.7e-96 355.5 213 89.7
Nitab4.5_0000123g0220 Nicotiana tabacum HOM05D004369 ORTHO05D004907 3.4e-75 285.4 223 76.2
Nitab4.5_0001270g0170 Nicotiana tabacum HOM05D004369 ORTHO05D004907 6.5e-74 281.2 223 75.8
Cc00_g08990 Coffea canephora HOM05D004369 ORTHO05D004907 4.2e-49 198.7 235 57.0
Nitab4.5_0000062g0280 Nicotiana tabacum HOM05D004369 ORTHO05D004907 5.5e-49 198.4 218 55.5
MSTRG.19768 Avicennia marina HOM05D004369 ORTHO05D004907 1.8e-47 193.4 218 56.0
Peaxi162Scf00607g00054 Petunia axillaris HOM05D004369 ORTHO05D004907 1.8e-47 193.4 222 55.4
CAN.G959.22 Capsicum annuum HOM05D004369 ORTHO05D004907 7.0e-44 181.4 172 66.9
PGSC0003DMG400028198 Solanum tuberosum HOM05D004369 ORTHO05D004907 3.5e-43 179.1 226 54.9
Migut.J01607 Erythranthe guttata HOM05D004369 ORTHO05D004907 4.5e-43 178.7 225 51.6
Sopen10g031550 Solanum pennellii HOM05D004369 ORTHO05D004907 2.9e-42 176.0 230 53.5
MSTRG.6296 Avicennia marina HOM05D004369 ORTHO05D004907 5.5e-41 171.8 218 51.8
CSS0041918 Camellia sinensis var. sinensis HOM05D004369 ORTHO05D004907 3.6e-40 169.1 213 50.2
DCAR_013523 Daucus carota HOM05D004369 ORTHO05D004907 6.1e-40 168.3 217 49.3
CiPaw.09G052400 Carya illinoinensis HOM05D004369 ORTHO05D004907 8.0e-40 167.9 225 48.0
Dinv06038 Davidia involucrata HOM05D004369 ORTHO05D004907 6.8e-39 164.9 222 53.6
Peaxi162Scf00003g05315 Petunia axillaris HOM05D004369 ORTHO05D004907 2.6e-38 162.9 217 57.6
Oeu044231.1 Olea europaea HOM05D004369 ORTHO05D004907 3.4e-38 162.5 222 52.3
Cfa019946 Carpinus fangiana HOM05D004369 ORTHO05D004907 7.5e-38 161.4 228 46.9
Haze_20292 Corylus avellana HOM05D004369 ORTHO05D004907 1.3e-37 160.6 228 46.5
SalBow6G6868 Salvia bowleyana HOM05D004369 ORTHO05D004907 1.7e-37 160.2 198 52.5
Oeu009515.1 Olea europaea HOM05D004369 ORTHO05D004907 4.8e-37 158.7 218 49.5
Oeu023004.1 Olea europaea HOM05D004369 ORTHO05D004907 6.3e-37 158.3 225 51.6
TAR623G1559 Trochodendron aralioides HOM05D004369 ORTHO05D004907 1.8e-36 156.8 216 48.1
Oeu057811.1 Olea europaea HOM05D004369 ORTHO05D004907 2.4e-36 156.4 210 49.5
RhsimUnG0020900 Rhododendron simsii HOM05D004369 ORTHO05D004907 4.1e-36 155.6 235 48.9
MBI13_g13129_MAGBIO Magnolia biondii HOM05D004369 ORTHO05D004907 7.0e-36 154.8 212 45.8
Nn7g37071 Nelumbo nucifera HOM05D004369 ORTHO05D004907 7.0e-36 154.8 219 47.9
Duzib106G1975 Durio zibethinus HOM05D004369 ORTHO05D004907 9.1e-36 154.5 224 46.4
Oeu060762.1 Olea europaea HOM05D004369 ORTHO05D004907 1.2e-35 154.1 232 46.1
Actinidia37863 Actinidia chinensis HOM05D004369 ORTHO05D004907 1.6e-35 153.7 204 49.5
TWI53G1196 Tripterygium wilfordii HOM05D004369 ORTHO05D004907 7.7e-35 151.4 236 45.8
Ah.04g150390 Amaranthus hybridus HOM05D004369 ORTHO05D004907 1.7e-34 150.2 215 45.6
TWI74G0038 Tripterygium wilfordii HOM05D004369 ORTHO05D004907 2.9e-34 149.4 241 42.3
Cpa.g.sc33.191 Carica papaya HOM05D004369 ORTHO05D004907 1.1e-33 147.5 222 43.7
Prupe.6G310500 Prunus persica HOM05D004369 ORTHO05D004907 1.9e-33 146.7 253 44.3
Potri.016G029600 Populus trichocarpa HOM05D004369 ORTHO05D004907 2.5e-33 146.4 253 41.9
Lsat_1_v5_gn_8_109221 Lactuca sativa HOM05D004369 ORTHO05D004907 9.5e-33 144.4 243 43.2
Thecc.05G119700 Theobroma cacao HOM05D004369 ORTHO05D004907 9.5e-33 144.4 243 42.0
CiPaw.10G044100 Carya illinoinensis HOM05D004369 ORTHO05D004907 1.2e-32 144.1 222 41.9
Ciclev10012618m.g Citrus clementina HOM05D004369 ORTHO05D004907 2.1e-32 143.3 237 43.9
Atru.chr1.1512 Acer truncatum HOM05D004369 ORTHO05D004907 3.6e-32 142.5 231 46.8
Sabra16G0033500 Salix brachista HOM05D004369 ORTHO05D004907 3.6e-32 142.5 252 40.5
Manes.08G065900 Manihot esculenta HOM05D004369 ORTHO05D004907 6.1e-32 141.7 236 42.4
Potri.006G032300 Populus trichocarpa HOM05D004369 ORTHO05D004907 1.8e-31 140.2 258 40.7
Duzib128G0931 Durio zibethinus HOM05D004369 ORTHO05D004907 3.0e-31 139.4 226 43.8
AUR62018430 Chenopodium quinoa HOM05D004369 ORTHO05D004907 4.0e-31 139.0 239 42.3
Oeu034749.1 Olea europaea HOM05D004369 ORTHO05D004907 4.0e-31 139.0 227 47.1
MD04G1191900 Malus domestica HOM05D004369 ORTHO05D004907 5.2e-31 138.7 258 42.2
AUR62021003 Chenopodium quinoa HOM05D004369 ORTHO05D004907 8.9e-31 137.9 241 41.5
Ah.13g077330 Amaranthus hybridus HOM05D004369 ORTHO05D004907 1.2e-30 137.5 220 45.5
Psat0ss9348g0120 Pisum sativum HOM05D004369 ORTHO05D004907 2.6e-30 136.3 202 44.1
EL10Ac3g07333 Beta vulgaris HOM05D004369 ORTHO05D004907 4.4e-30 135.6 239 42.3
Glyma.03G120700 Glycine max HOM05D004369 ORTHO05D004907 5.7e-30 135.2 234 43.2
Sabra06G0021600 Salix brachista HOM05D004369 ORTHO05D004907 5.7e-30 135.2 254 40.6
FvH4_6g07790 Fragaria vesca HOM05D004369 ORTHO05D004907 1.3e-29 134.0 245 41.6
FAN14G1324 Fragaria x ananassa HOM05D002683 ORTHO05D007757 1.7e-29 133.7 246 41.5
Lj1g0025044 Lotus japonicus HOM05D004369 ORTHO05D004907 2.8e-29 132.9 233 41.2
Sc19g0007900 Simmondsia chinensis HOM05D004369 ORTHO05D004907 3.7e-29 132.5 212 44.3
VMungo1383G1978 Vigna mungo HOM05D004369 ORTHO05D004907 4.9e-29 132.1 241 42.7
Aqoxy2G00033 Aquilegia oxysepala HOM05D004369 ORTHO05D004907 6.3e-29 131.7 266 39.1
CiPaw.12G092400 Carya illinoinensis HOM05D004369 ORTHO05D004907 6.3e-29 131.7 165 50.9
Ca_08356_v3 Cicer arietinum L. HOM05D004369 ORTHO05D004907 8.3e-29 131.3 244 40.6
FAN09G2868 Fragaria x ananassa HOM05D004369 ORTHO05D004907 1.1e-28 131.0 245 41.6
QL07p014155 Quercus lobata HOM05D004369 ORTHO05D004907 1.8e-28 130.2 237 40.5
Oeu034750.1 Olea europaea HOM05D004369 ORTHO05D004907 2.4e-28 129.8 229 45.0
MSTRG.26187 Avicennia marina HOM05D004369 ORTHO05D004907 3.1e-28 129.4 222 44.6
RcHm_v2.0_Chr3g0457501 Rosa chinensis HOM05D004369 ORTHO05D004907 3.1e-28 129.4 180 50.0
SGA_v2.0_scaffold66G22309 Striga asiatica HOM05D004369 ORTHO05D004907 4.1e-28 129.0 230 42.2
ClCG10G016480 Citrullus lanatus HOM05D004369 ORTHO05D004907 7.0e-28 128.3 233 39.9
PGR142G3989 Punica granatum HOM05D004369 ORTHO05D004907 9.2e-28 127.9 256 38.7
CsaV3_3G039860 Cucumis sativus L. HOM05D004369 ORTHO05D004907 2.0e-27 126.7 238 40.3
FAN02G1899 Fragaria x ananassa HOM05D002683 ORTHO05D007757 4.5e-27 125.6 245 40.4
Lalb_Chr14g0365411 Lupinus albus HOM05D004369 ORTHO05D004907 1.0e-26 124.4 237 40.9
MELO3C009728.2 Cucumis melo HOM05D004369 ORTHO05D004907 1.7e-26 123.6 235 39.1
Eucgr.K01686 Eucalyptus grandis HOM05D004369 ORTHO05D004907 1.7e-26 123.6 279 35.8
Phvul.001G116900 Phaseolus vulgaris HOM05D004369 ORTHO05D004907 2.3e-26 123.2 241 39.4
PGR042G0777 Punica granatum HOM05D004369 ORTHO05D004907 5.0e-26 122.1 219 42.5
Glyma.19G125300 Glycine max HOM05D004369 ORTHO05D004907 8.6e-26 121.3 234 40.2
Manes.09G001100 Manihot esculenta HOM05D004369 ORTHO05D004907 8.6e-26 121.3 234 39.3
Medtr7g088620 Medicago truncatula HOM05D004369 ORTHO05D004907 1.5e-25 120.6 230 41.3
Gorai.002G226300 Gossypium raimondii HOM05D004369 ORTHO05D004907 4.3e-25 119.0 224 42.0
Gohir.A01G192900 Gossypium hirsutum HOM05D004369 ORTHO05D004907 5.6e-25 118.6 224 41.5
CANSAT80G1482 Cannabis sativa HOM05D004369 ORTHO05D004907 9.5e-25 117.9 213 43.2
Migut.K00167 Erythranthe guttata HOM05D004369 ORTHO05D004907 2.1e-24 116.7 216 39.8
Gohir.D01G183200 Gossypium hirsutum HOM05D004369 ORTHO05D004907 2.8e-24 116.3 224 40.6
HanXRQChr09g0258571 Helianthus annuus HOM05D004369 ORTHO05D004907 3.6e-24 115.9 207 45.9
Gorai.007G351100 Gossypium raimondii HOM05D004369 ORTHO05D004907 1.4e-23 114.0 201 41.3
DCAR_020610 Daucus carota HOM05D004369 ORTHO05D004907 2.3e-23 113.2 163 50.9
Gohir.D11G320900 Gossypium hirsutum HOM05D004369 ORTHO05D004907 2.3e-23 113.2 201 41.3
MSTRG.10776 Avicennia marina HOM05D004369 ORTHO05D004907 3.0e-23 112.8 221 43.4
HPP92_012446 Vanilla planifolia HOM05D004369 ORTHO05D004907 3.0e-23 112.8 177 43.5
Gohir.A11G305500 Gossypium hirsutum HOM05D004369 ORTHO05D004907 1.2e-22 110.9 201 40.8
Lalb_Chr22g0357981 Lupinus albus HOM05D004369 ORTHO05D004907 1.2e-22 110.9 233 38.6
Phvul.002G069001 Phaseolus vulgaris HOM05D004369 ORTHO05D004907 3.4e-22 109.4 225 38.7
A09p49750 Brassica napus HOM05D004369 ORTHO05D004907 4.4e-22 109.0 229 37.6
BraA09t40428Z Brassica rapa HOM05D004369 ORTHO05D004907 4.4e-22 109.0 229 37.6
SalBow1G6186 Salvia bowleyana HOM05D004369 ORTHO05D004907 5.8e-22 108.6 225 39.1
SGA_v2.0_scaffold69G23192 Striga asiatica HOM05D004369 ORTHO05D004907 1.3e-21 107.5 221 37.6
THA.LOC104824387 Tarenaya hassleriana HOM05D004369 ORTHO05D004907 1.7e-21 107.1 250 35.2
A04p31330 Brassica napus HOM05D004369 ORTHO05D004907 3.7e-21 105.9 228 37.3
BcaC07g40000 Brassica carinata HOM05D004369 ORTHO05D004907 6.4e-21 105.1 229 35.8
BcaC07g40111 Brassica carinata HOM05D004369 ORTHO05D004907 6.4e-21 105.1 228 38.2
C08p32120 Brassica napus HOM05D004369 ORTHO05D004907 6.4e-21 105.1 229 35.8
BolC8t50831H Brassica oleracea HOM05D004369 ORTHO05D004907 6.4e-21 105.1 229 35.8
SGA_v2.0_scaffold106G30551 Striga asiatica HOM05D004369 ORTHO05D004907 1.8e-20 103.6 206 39.8
CDE09G1065 Ceratophyllum demersum HOM05D004369 ORTHO05D004907 4.1e-20 102.4 207 38.2
Thhalv10017173m.g Eutrema salsugineum HOM05D004369 ORTHO05D004907 4.1e-20 102.4 238 33.6
CARHR136130 Cardamine hirsuta HOM05D004369 ORTHO05D004907 5.4e-20 102.1 233 36.1
HanXRQChr03g0086901 Helianthus annuus HOM05D004369 ORTHO05D004907 1.6e-19 100.5 227 41.9
BcaC02g12874 Brassica carinata HOM05D004369 ORTHO05D004907 2.7e-19 99.8 224 34.4
C04p68730 Brassica napus HOM05D004369 ORTHO05D004907 3.5e-19 99.4 224 34.4
BolC4t28378H Brassica oleracea HOM05D004369 ORTHO05D004907 3.5e-19 99.4 224 34.4
AT3G56880 Arabidopsis thaliana HOM05D004369 ORTHO05D004907 1.7e-18 97.1 242 34.3
BcaC02g09876 Brassica carinata HOM05D004369 ORTHO05D004907 5.0e-18 95.5 233 36.5
C04p35650 Brassica napus HOM05D004369 ORTHO05D004907 5.0e-18 95.5 233 36.5
BolC4t25239H Brassica oleracea HOM05D004369 ORTHO05D004907 5.0e-18 95.5 233 36.5
Lalb_Chr24g0400611 Lupinus albus HOM05D004369 ORTHO05D004907 5.0e-18 95.5 185 37.3
Carub.0005s2361 Capsella rubella HOM05D004369 ORTHO05D004907 6.6e-18 95.1 227 34.4
Sp5g05710 Schrenkiella parvula HOM05D004369 ORTHO05D004907 8.6e-18 94.7 248 34.3
Sp4g23330 Schrenkiella parvula HOM05D004369 ORTHO05D004907 1.1e-17 94.4 242 34.3
BcaB02g08344 Brassica carinata HOM05D004369 ORTHO05D004907 1.5e-17 94.0 232 34.9
Gorai.007G351200 Gossypium raimondii HOM05D004369 ORTHO05D004907 1.9e-17 93.6 201 38.3
PSO384G0208 Papaver somniferum HOM05D004369 ORTHO05D004907 1.9e-17 93.6 179 41.3
ECA236G2438 Erigeron canadensis HOM05D004369 ORTHO05D004907 2.5e-17 93.2 230 38.3
BraA04t16076Z Brassica rapa HOM05D004369 ORTHO05D004907 3.3e-17 92.8 231 36.8
BraA04t18590Z Brassica rapa HOM05D004369 ORTHO05D004907 3.3e-17 92.8 230 36.5
TPR.G22743 Trifolium pratense HOM05D004369 ORTHO05D004907 3.3e-17 92.8 146 44.5
A04p03590 Brassica napus HOM05D004369 ORTHO05D004907 4.3e-17 92.4 231 36.4
Aa31LG10G11730 Aethionema arabicum HOM05D004369 ORTHO05D004907 5.6e-17 92.0 241 32.4
AL5G38270 Arabidopsis lyrata HOM05D004369 ORTHO05D004907 5.6e-17 92.0 248 33.1
Gohir.D11G321000 Gossypium hirsutum HOM05D004369 ORTHO05D004907 9.5e-17 91.3 201 37.3
PSO339G3328 Papaver somniferum HOM05D004369 ORTHO05D004907 9.5e-17 91.3 179 40.8
AL4G38990 Arabidopsis lyrata HOM05D004369 ORTHO05D004907 2.1e-16 90.1 235 31.9
Gohir.A11G305600 Gossypium hirsutum HOM05D004369 ORTHO05D004907 2.1e-16 90.1 203 37.4
Sc25g0005580 Simmondsia chinensis HOM05D004369 ORTHO05D004907 2.1e-16 90.1 126 47.6
THA.LOC104815333 Tarenaya hassleriana HOM05D004369 ORTHO05D004907 2.8e-16 89.7 243 32.1
HPP92_014347 Vanilla planifolia HOM05D004369 ORTHO05D004907 4.7e-16 89.0 197 38.1
THA.LOC104803243 Tarenaya hassleriana HOM05D004369 ORTHO05D004907 6.2e-16 88.6 236 30.9
CARHR167030 Cardamine hirsuta HOM05D004369 ORTHO05D004907 2.3e-15 86.7 225 34.2
CAN.G128.96 Capsicum annuum HOM05D004369 ORTHO05D004907 3.1e-15 86.3 108 51.9
Thhalv10006505m.g Eutrema salsugineum HOM05D004369 ORTHO05D004907 8.9e-15 84.7 237 31.2
Sed0018866 Sechium edule HOM05D004369 ORTHO05D004907 8.9e-15 84.7 209 36.8
AT2G41010 Arabidopsis thaliana HOM05D004369 ORTHO05D004907 4.4e-14 82.4 235 31.5
CDE08G1070 Ceratophyllum demersum HOM05D004369 ORTHO05D004907 7.5e-14 81.6 145 41.4
unitig_21.g20674 Utricularia gibba HOM05D004369 ORTHO05D004907 1.7e-13 80.5 237 35.0
Carub.0004s2334 Capsella rubella HOM05D004369 ORTHO05D004907 1.9e-12 77.0 235 31.5
CDE02G4522 Ceratophyllum demersum HOM05D004369 ORTHO05D004907 1.9e-12 77.0 155 36.8
Eucgr.A02182 Eucalyptus grandis HOM05D004369 ORTHO05D004907 3.5e-11 72.8 125 43.2
ATR1096G063 Amborella trichopoda HOM05D004369 ORTHO05D004907 6.0e-11 72.0 216 33.8
CDE04G0994 Ceratophyllum demersum HOM05D004369 ORTHO05D004907 1.0e-10 71.2 164 36.0
HPP92_028709 Vanilla planifolia HOM05D004369 ORTHO05D004907 1.5e-09 67.4 89 50.6
Zm00001eb128970 Zea mays HOM05D004369 ORTHO05D004907 5.6e-09 65.5 127 37.8
Os11g0131100 Oryza sativa ssp. japonica HOM05D004369 ORTHO05D004907 1.6e-08 63.9 133 36.8
Os01g0278000 Oryza sativa ssp. japonica HOM05D004369 ORTHO05D004907 2.8e-08 63.2 89 43.8
SHI12275 Sapria himalayana HOM05D004369 ORTHO05D004907 8.9e-07 58.2 174 33.3
SalBow6G1278 Salvia bowleyana HOM05D035523 ORTHO05D004907 4.4e-06 55.8 72 51.4


User provided reference genes

Program Settings