Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen10g028770 Solanum pennellii HOM05D005060 ORTHO05D005975 5.5e-56 221.1 143 100.0
Solyc10g077090.2 Solanum lycopersicum HOM05D005060 ORTHO05D005975 1.5e-53 213.0 143 97.9
CAN.G959.26 Capsicum annuum HOM05D005060 ORTHO05D005975 1.4e-38 163.3 143 78.3
PGSC0003DMG400007184 Solanum tuberosum HOM05D005060 ORTHO05D005975 4.1e-35 151.8 113 94.7
Nitab4.5_0001270g0130 Nicotiana tabacum HOM05D005060 ORTHO05D005975 8.3e-28 127.5 111 84.7
Sopen10g031600 Solanum pennellii HOM05D005060 ORTHO05D005975 4.0e-22 108.6 150 58.0
PGSC0003DMG400028107 Solanum tuberosum HOM05D005060 ORTHO05D005975 4.0e-22 108.6 150 58.7
Peaxi162Scf00153g01321 Petunia axillaris HOM05D005060 ORTHO05D005975 8.9e-22 107.5 147 64.6
Nitab4.5_0000062g0300 Nicotiana tabacum HOM05D005060 ORTHO05D005975 1.2e-21 107.1 147 61.2
Solyc10g081100.3 Solanum lycopersicum HOM05D005060 ORTHO05D005975 1.2e-21 107.1 150 57.3
MSTRG.6293 Avicennia marina HOM05D005060 ORTHO05D005975 2.9e-20 102.4 150 61.3
CAN.G128.101 Capsicum annuum HOM05D005060 ORTHO05D005975 4.9e-20 101.7 148 54.1
Oeu023007.1 Olea europaea HOM05D005060 ORTHO05D005975 8.3e-20 100.9 152 59.9
Nitab4.5_0003286g0020 Nicotiana tabacum HOM05D005060 ORTHO05D005975 7.0e-19 97.8 148 49.3
Migut.J01559 Erythranthe guttata HOM05D005060 ORTHO05D005975 7.8e-18 94.4 150 54.7
SGA_v2.0_scaffold66G22311 Striga asiatica HOM05D005060 ORTHO05D005975 1.1e-16 90.5 152 48.0
Cc06_g22810 Coffea canephora HOM05D005060 ORTHO05D005975 1.2e-15 87.0 139 59.0
ECA236G1981 Erigeron canadensis HOM05D005060 ORTHO05D005975 1.1e-14 84.0 139 54.0
Nitab4.5_0002042g0050 Nicotiana tabacum HOM05D005060 ORTHO05D005975 1.5e-13 80.1 58 69.0
TAR369G0553 Trochodendron aralioides HOM05D005060 ORTHO05D005975 1.5e-13 80.1 147 56.5
Rhsim04G0118500 Rhododendron simsii HOM05D005060 ORTHO05D005975 3.7e-12 75.5 150 38.0
DCAR_009091 Daucus carota HOM05D005060 ORTHO05D005975 1.1e-11 73.9 150 54.0
SGA_v2.0_scaffold69G23194 Striga asiatica HOM05D005060 ORTHO05D005975 1.4e-11 73.6 130 56.2
GSVIVG01025849001 Vitis vinifera HOM05D005060 ORTHO05D005975 1.4e-11 73.6 124 58.1
Haze_20306 Corylus avellana HOM05D005060 ORTHO05D005975 3.2e-11 72.4 133 46.6
Cfa019938 Carpinus fangiana HOM05D005060 ORTHO05D005975 2.1e-10 69.7 115 48.7
Hma1.2p1_0031F.1_g018400 Hydrangea macrophylla HOM05D005060 ORTHO05D005975 2.1e-10 69.7 132 56.1
Hma1.2p1_2089F.1_g313840 Hydrangea macrophylla HOM05D005060 ORTHO05D005975 2.1e-10 69.7 132 56.1
PSO339G2385 Papaver somniferum HOM05D005060 ORTHO05D005975 2.1e-10 69.7 153 46.4
MBI19_g25016_MAGBIO Magnolia biondii HOM05D005060 ORTHO05D005975 1.0e-09 67.4 117 57.3
PSO384G0259 Papaver somniferum HOM05D005060 ORTHO05D005975 1.3e-09 67.0 153 47.7
Ah.04g150220 Amaranthus hybridus HOM05D005060 ORTHO05D005975 1.7e-09 66.6 123 48.0
Cpa.g.sc33.198 Carica papaya HOM05D005060 ORTHO05D005975 1.7e-09 66.6 150 53.3
Lsat_1_v5_gn_8_109400 Lactuca sativa HOM05D005060 ORTHO05D005975 1.1e-08 63.9 151 35.8
Atru.chr1.1518 Acer truncatum HOM05D005060 ORTHO05D005975 5.6e-08 61.6 146 50.0
ATR0787G086 Amborella trichopoda HOM05D005060 ORTHO05D005975 5.6e-08 61.6 147 52.4
ClCG04G005980 Citrullus lanatus HOM05D005060 ORTHO05D005975 5.6e-08 61.6 114 36.8
Nn7g37114 Nelumbo nucifera HOM05D005060 ORTHO05D005975 5.6e-08 61.6 146 51.4
Cpa.g.sc33.199 Carica papaya HOM05D005060 ORTHO05D005975 7.3e-08 61.2 146 45.9
Peaxi162Scf00003g00535 Petunia axillaris HOM05D005060 ORTHO05D049430 7.3e-08 61.2 70 54.3
RcHm_v2.0_Chr1g0331611 Rosa chinensis HOM05D005060 ORTHO05D005975 7.3e-08 61.2 143 38.5
Actinidia24546 Actinidia chinensis HOM05D005060 ORTHO05D005975 9.5e-08 60.8 94 64.9
Lj1C23T21 Lonicera japonica HOM05D005060 ORTHO05D005975 9.5e-08 60.8 116 43.1
Ah.13g077380 Amaranthus hybridus HOM05D005060 ORTHO05D005975 1.2e-07 60.5 144 43.8
Aqoxy1G00045 Aquilegia oxysepala HOM05D005060 ORTHO05D005975 1.2e-07 60.5 147 50.3
CSS0016899 Camellia sinensis var. sinensis HOM05D005060 ORTHO05D005975 2.8e-07 59.3 149 50.3
PGR042G1122 Punica granatum HOM05D005060 ORTHO05D005975 4.7e-07 58.5 127 49.6
Manes.08G066600 Manihot esculenta HOM05D005060 ORTHO05D005975 8.1e-07 57.8 150 39.3
CDE04G0407 Ceratophyllum demersum HOM05D005060 ORTHO05D005975 1.4e-06 57.0 65 84.6
Ciclev10013047m.g Citrus clementina HOM05D005060 ORTHO05D005975 1.4e-06 57.0 148 48.6
Hund24512 Selenicereus undatus HOM05D005060 ORTHO05D005975 1.4e-06 57.0 147 51.0
Sc13g0000780 Simmondsia chinensis HOM05D005060 ORTHO05D005975 1.8e-06 56.6 110 49.1
CiPaw.10G123900 Carya illinoinensis HOM05D005060 ORTHO05D005975 2.4e-06 56.2 113 54.9
TWI53G1989 Tripterygium wilfordii HOM05D005060 ORTHO05D005975 2.4e-06 56.2 148 41.9
Ciclev10013042m.g Citrus clementina HOM05D005060 ORTHO05D005975 3.1e-06 55.8 136 53.7
AUR62020993 Chenopodium quinoa HOM05D005060 ORTHO05D005975 4.0e-06 55.5 114 53.5
HanXRQChr05g0130501 Helianthus annuus HOM05D005060 ORTHO05D005975 4.0e-06 55.5 96 45.8
MELO3C019148.2 Cucumis melo HOM05D005060 ORTHO05D005975 5.2e-06 55.1 114 35.1
Manes.13G072000 Manihot esculenta HOM05D005060 ORTHO05D005975 5.2e-06 55.1 150 44.0
unitig_21.g20673 Utricularia gibba HOM05D005060 ORTHO05D005975 5.2e-06 55.1 150 38.0
Atru.chr1.1520 Acer truncatum HOM05D005060 ORTHO05D005975 6.8e-06 54.7 131 41.2
CiPaw.09G163900 Carya illinoinensis HOM05D005060 ORTHO05D005975 6.8e-06 54.7 107 32.7
Potri.016G027600 Populus trichocarpa HOM05D005060 ORTHO05D005975 6.8e-06 54.7 145 35.9
CDE02G1443 Ceratophyllum demersum HOM05D005060 ORTHO05D005975 8.9e-06 54.3 65 81.5


User provided reference genes

Program Settings