Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen10g027050 Solanum pennellii HOM05D004142 ORTHO05D005411 0.0e+00 1198.0 620 100.0
Solyc10g074560.2 Solanum lycopersicum HOM05D004142 ORTHO05D005411 0.0e+00 1147.9 620 96.6
CAN.G765.24 Capsicum annuum HOM05D004142 ORTHO05D005411 3.2e-294 1014.6 614 86.2
Peaxi162Scf01986g00004 Petunia axillaris HOM05D004142 ORTHO05D005411 1.9e-278 962.2 614 83.2
Nitab4.5_0005657g0020 Nicotiana tabacum HOM05D004142 ORTHO05D005411 2.5e-262 908.7 625 79.5
Dinv14174 Davidia involucrata HOM05D004142 ORTHO05D005411 1.2e-232 810.1 627 69.1
Nitab4.5_0001700g0140 Nicotiana tabacum HOM05D004142 ORTHO05D005411 9.6e-230 800.4 618 73.5
CAN.G397.37 Capsicum annuum HOM05D004142 ORTHO05D005411 4.0e-228 795.0 500 82.6
CSS0035317 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 3.5e-224 781.9 625 66.4
Ciclev10028022m.g Citrus clementina HOM05D004142 ORTHO05D005411 5.1e-223 778.1 622 66.1
Lj5C171T17 Lonicera japonica HOM05D004142 ORTHO05D005411 5.1e-223 778.1 644 64.1
CSS0014725 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 1.5e-219 766.5 614 66.6
Thecc.02G146100 Theobroma cacao HOM05D004142 ORTHO05D005411 1.5e-219 766.5 629 63.8
Cfa005371 Carpinus fangiana HOM05D004142 ORTHO05D005411 3.4e-219 765.4 608 65.8
Atru.chr3.3247 Acer truncatum HOM05D004142 ORTHO05D005411 4.4e-219 765.0 626 65.0
Prupe.8G180000 Prunus persica HOM05D004142 ORTHO05D005411 1.7e-218 763.1 622 64.6
MD10G1141700 Malus domestica HOM05D004142 ORTHO05D005411 4.9e-218 761.5 620 64.4
Rhsim11G0198100 Rhododendron simsii HOM05D004142 ORTHO05D005411 1.1e-217 760.4 614 66.1
Actinidia20577 Actinidia chinensis HOM05D004142 ORTHO05D005411 1.4e-217 760.0 628 64.2
CiPaw.06G115400 Carya illinoinensis HOM05D004142 ORTHO05D005411 3.5e-216 755.4 622 65.3
TAR633G0693 Trochodendron aralioides HOM05D004142 ORTHO05D005411 1.1e-214 750.4 627 63.8
SGA_v2.0_scaffold98G29302 Striga asiatica HOM05D004142 ORTHO05D005411 2.5e-214 749.2 584 68.5
FAN24G0393 Fragaria x ananassa HOM05D004142 ORTHO05D005411 7.3e-214 747.7 618 63.9
Gohir.A13G065000 Gossypium hirsutum HOM05D004142 ORTHO05D005411 1.6e-213 746.5 624 63.6
Potri.009G168100 Populus trichocarpa HOM05D004142 ORTHO05D005411 1.6e-213 746.5 628 63.7
Actinidia17993 Actinidia chinensis HOM05D004142 ORTHO05D005411 3.6e-213 745.3 623 63.6
Duzib052G0377 Durio zibethinus HOM05D004142 ORTHO05D005411 6.2e-213 744.6 632 63.6
Gorai.013G064000 Gossypium raimondii HOM05D004142 ORTHO05D005411 8.1e-213 744.2 624 63.9
QL11p056391 Quercus lobata HOM05D004142 ORTHO05D005411 6.9e-212 741.1 623 65.2
Gohir.D13G057300 Gossypium hirsutum HOM05D004142 ORTHO05D005411 1.2e-211 740.3 624 63.6
TWI75G0433 Tripterygium wilfordii HOM05D004142 ORTHO05D005411 2.0e-211 739.6 624 63.0
Cc09_g10830 Coffea canephora HOM05D004142 ORTHO05D005411 7.6e-211 737.6 611 64.5
Eucgr.G01885 Eucalyptus grandis HOM05D004142 ORTHO05D005411 1.7e-210 736.5 620 62.4
MSTRG.27614 Avicennia marina HOM05D004142 ORTHO05D005411 2.9e-210 735.7 612 65.2
PGR042G3440 Punica granatum HOM05D004142 ORTHO05D005411 3.2e-209 732.3 623 62.8
Manes.04G066800 Manihot esculenta HOM05D004142 ORTHO05D005411 3.5e-208 728.8 611 63.5
CANSAT25G0210 Cannabis sativa HOM05D004142 ORTHO05D005411 1.3e-207 726.9 596 64.4
RcHm_v2.0_Chr6g0280901 Rosa chinensis HOM05D004142 ORTHO05D005411 8.7e-207 724.2 622 61.6
CSS0002990 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 5.6e-206 721.5 644 62.3
Haze_02000 Corylus avellana HOM05D004142 ORTHO05D005411 3.7e-205 718.8 644 61.0
SalBow5G1400 Salvia bowleyana HOM05D004142 ORTHO05D005411 1.0e-202 710.7 584 65.4
SalBow5G4664 Salvia bowleyana HOM05D004142 ORTHO05D005411 3.8e-202 708.8 584 65.2
Glyma.14G215500 Glycine max HOM05D004142 ORTHO05D005411 1.4e-201 706.8 583 63.1
Glyma.02G245400 Glycine max HOM05D004142 ORTHO05D005411 1.9e-201 706.4 582 63.4
FAN15G2670 Fragaria x ananassa HOM05D004142 ORTHO05D005411 4.2e-201 705.3 625 60.6
Sc08g0002210 Simmondsia chinensis HOM05D004142 ORTHO05D005411 4.6e-200 701.8 605 62.8
Sabra09G0130600 Salix brachista HOM05D004142 ORTHO05D005852 6.0e-200 701.4 599 62.3
Nn5g31006 Nelumbo nucifera HOM05D004142 ORTHO05D005411 1.0e-199 700.7 621 61.5
Phvul.008G235900 Phaseolus vulgaris HOM05D004142 ORTHO05D005411 1.8e-199 699.9 591 62.8
EL10Ac9g21530 Beta vulgaris HOM05D004142 ORTHO05D005411 3.9e-199 698.7 590 63.7
VMungo0647G1269 Vigna mungo HOM05D004142 ORTHO05D005411 8.2e-197 691.0 615 60.7
Sed0023655 Sechium edule HOM05D004142 ORTHO05D005411 3.1e-196 689.1 605 60.7
Lalb_Chr04g0251341 Lupinus albus HOM05D004142 ORTHO05D005411 5.3e-196 688.3 576 62.7
Psat2g043640 Pisum sativum HOM05D004142 ORTHO05D005411 5.3e-196 688.3 622 59.0
DCAR_005486 Daucus carota HOM05D004142 ORTHO05D005411 1.2e-195 687.2 628 60.0
Medtr5g078780 Medicago truncatula HOM05D004142 ORTHO05D005411 2.2e-194 682.9 618 58.4
MELO3C013248.2 Cucumis melo HOM05D004142 ORTHO05D005411 5.0e-194 681.8 605 60.5
TWI31G1182 Tripterygium wilfordii HOM05D004142 ORTHO05D005411 2.5e-193 679.5 624 59.8
Ah.05g178840 Amaranthus hybridus HOM05D004142 ORTHO05D005411 3.2e-193 679.1 578 62.6
Hund06363 Selenicereus undatus HOM05D004142 ORTHO05D005411 7.2e-193 677.9 590 62.0
CARHR293590 Cardamine hirsuta HOM05D004142 ORTHO05D005411 2.7e-192 676.0 602 60.5
Migut.B01359 Erythranthe guttata HOM05D004142 ORTHO05D005411 3.5e-192 675.6 623 59.9
Aa31LG8G14620 Aethionema arabicum HOM05D004142 ORTHO05D005411 1.3e-191 673.7 598 59.4
CsaV3_7G001920 Cucumis sativus L. HOM05D004142 ORTHO05D005411 3.9e-191 672.2 597 60.6
ECA233G5375 Erigeron canadensis HOM05D004142 ORTHO05D005411 8.7e-191 671.0 591 60.9
TPR.G8874 Trifolium pratense HOM05D004142 ORTHO05D005411 4.3e-190 668.7 591 59.1
Thhalv10022610m.g Eutrema salsugineum HOM05D004142 ORTHO05D005411 1.6e-189 666.8 608 58.4
BcaB07g31738 Brassica carinata HOM05D004142 ORTHO05D005411 1.8e-188 663.3 594 58.8
AL3G50110 Arabidopsis lyrata HOM05D004142 ORTHO05D005411 2.6e-187 659.4 598 58.2
COL.COLO4_34310 Corchorus olitorius HOM05D004142 ORTHO05D005411 2.6e-187 659.4 623 58.4
LjContig00141g0017492 Lotus japonicus HOM05D004142 ORTHO05D005411 2.6e-187 659.4 609 59.3
BcaC04g22983 Brassica carinata HOM05D004142 ORTHO05D005411 5.9e-187 658.3 611 57.4
vmacro02340 Vaccinium macrocarpon HOM05D004142 ORTHO05D005411 1.0e-186 657.5 615 58.9
HanXRQChr16g0515111 Helianthus annuus HOM05D004142 ORTHO05D005411 1.7e-186 656.8 610 58.7
Sp3g30590 Schrenkiella parvula HOM05D004142 ORTHO05D005411 1.7e-186 656.8 606 57.4
Aqoxy6G01597 Aquilegia oxysepala HOM05D004142 ORTHO05D005411 2.2e-186 656.4 622 58.2
C09p13280 Brassica napus HOM05D004142 ORTHO05D005411 2.2e-186 656.4 619 57.2
BolC9t54221H Brassica oleracea HOM05D004142 ORTHO05D005411 2.2e-186 656.4 619 57.2
HanXRQChr09g0239911 Helianthus annuus HOM05D004142 ORTHO05D005411 1.9e-185 653.3 578 60.6
BcaB03g16472 Brassica carinata HOM05D004142 ORTHO05D005411 2.5e-185 652.9 594 59.1
A09p11250 Brassica napus HOM05D004142 ORTHO05D005411 1.0e-183 647.5 607 57.3
BraA09t36766Z Brassica rapa HOM05D004142 ORTHO05D005411 1.0e-183 647.5 606 56.9
A07p03800 Brassica napus HOM05D004142 ORTHO05D005411 3.9e-183 645.6 601 57.9
AT2G17250 Arabidopsis thaliana HOM05D004142 ORTHO05D005411 5.1e-183 645.2 594 58.1
Carub.0003s3119 Capsella rubella HOM05D004142 ORTHO05D005411 1.5e-182 643.7 593 57.3
BraA07t28174Z Brassica rapa HOM05D004142 ORTHO05D005411 2.0e-182 643.3 605 57.0
Ca_01556_v3 Cicer arietinum L. HOM05D004142 ORTHO05D005411 5.7e-182 641.7 622 56.1
THA.LOC104819692 Tarenaya hassleriana HOM05D004142 ORTHO05D005411 5.7e-182 641.7 632 57.3
CDE05G3311 Ceratophyllum demersum HOM05D004142 ORTHO05D005411 4.1e-180 635.6 625 54.6
arahy.Tifrunner.gnm1.ann1.FRA838 Arachis hypogaea HOM05D004142 ORTHO05D005411 4.5e-179 632.1 628 56.4
Lsat_1_v5_gn_5_183861 Lactuca sativa HOM05D004142 ORTHO05D005411 1.7e-178 630.2 590 60.0
arahy.Tifrunner.gnm1.ann1.52DH7S Arachis hypogaea HOM05D004142 ORTHO05D005411 2.7e-176 622.9 634 55.0
CSS0034003 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 1.8e-175 620.2 628 57.6
ClCG02G003400 Citrullus lanatus HOM05D004142 ORTHO05D005411 1.7e-173 613.6 621 55.2
PSO675G0945 Papaver somniferum HOM05D004142 ORTHO05D005411 8.2e-173 611.3 606 55.0
PSO541G0415 Papaver somniferum HOM05D004142 ORTHO05D005411 1.1e-172 610.9 606 54.8
Atru.chr5.3556 Acer truncatum HOM05D004142 ORTHO05D005411 7.0e-172 608.2 618 55.8
arahy.Tifrunner.gnm1.ann1.0H97XI Arachis hypogaea HOM05D004142 ORTHO05D005411 5.9e-171 605.1 627 55.5
FvH4_2g16780 Fragaria vesca HOM05D004142 ORTHO05D005411 5.7e-166 588.6 497 63.0
Os04g0585300 Oryza sativa ssp. japonica HOM05D004142 ORTHO05D005411 3.7e-165 585.9 602 53.3
Zm00001eb428130 Zea mays HOM05D004142 ORTHO05D005411 4.5e-163 578.9 602 52.3
AUR62013175 Chenopodium quinoa HOM05D004142 ORTHO05D005411 8.3e-157 558.1 594 54.0
BcaC06g36246 Brassica carinata HOM05D004142 ORTHO05D005411 1.2e-155 554.3 594 52.9
ATR0807G091 Amborella trichopoda HOM05D004142 ORTHO05D005411 1.6e-155 553.9 590 52.0
BolC7t41018H Brassica oleracea HOM05D004142 ORTHO05D005411 7.7e-155 551.6 565 54.0
MD05G1138800 Malus domestica HOM05D004142 ORTHO05D005411 1.3e-154 550.8 604 54.3
C07p06050 Brassica napus HOM05D004142 ORTHO05D005411 2.8e-149 533.1 595 51.6
AUR62010174 Chenopodium quinoa HOM05D004142 ORTHO05D005411 8.0e-136 488.4 463 59.8
TAR381G0855 Trochodendron aralioides HOM05D004142 ORTHO05D005411 1.8e-135 487.3 474 57.8
unitig_578.g16758 Utricularia gibba HOM05D004142 ORTHO05D005411 3.1e-135 486.5 583 49.4
Mapoly0043s0054 Marchantia polymorpha HOM05D004142 ORTHO05D005411 7.5e-134 481.9 622 46.0
AagrBONN_evm.TU.Sc2ySwM_228.5327 Anthoceros agrestis HOM05D004142 ORTHO05D005411 2.4e-124 450.3 620 43.1
Pp3c9_12610 Physcomitrium patens HOM05D004142 ORTHO05D005411 5.6e-121 439.1 603 45.1
Oeu037462.1 Olea europaea HOM05D004142 ORTHO05D005411 2.1e-115 420.6 393 59.8
BcaB07g31740 Brassica carinata HOM05D004142 ORTHO05D005411 8.7e-98 362.1 497 45.5
Cpa.g.sc60.17 Carica papaya HOM05D004142 ORTHO05D005411 3.6e-96 356.7 375 55.5
SHI03795 Sapria himalayana HOM05D004142 ORTHO05D005411 1.3e-90 338.2 265 66.0
SMO338G0043 Selaginella moellendorffii HOM05D004142 ORTHO05D005411 1.9e-89 334.3 541 39.2
MD11G1014400 Malus domestica HOM05D004142 ORTHO05D005411 1.2e-78 298.5 346 51.4
ECA246G3488 Erigeron canadensis HOM05D004142 ORTHO05D005411 2.0e-78 297.7 352 48.0
CBR_g44269 Chara braunii HOM05D004142 ORTHO05D005411 9.3e-76 288.9 361 47.1
HPP92_025664 Vanilla planifolia HOM05D004142 ORTHO05D005411 3.0e-74 283.9 278 56.5
PRCOL_00005396 Prasinoderma coloniale HOM05D004142 ORTHO05D005411 5.5e-60 236.5 295 44.1
Cpa.g.sc60.19 Carica papaya HOM05D004142 ORTHO05D005411 2.7e-59 234.2 208 61.5
Ca_05793_v3 Cicer arietinum L. HOM05D004142 ORTHO05D005411 2.7e-59 234.2 215 54.0
Eucgr.H04975 Eucalyptus grandis HOM05D004142 ORTHO05D005411 2.7e-59 234.2 252 50.0
GSVIVG01004114001 Vitis vinifera HOM05D004142 ORTHO05D005411 7.9e-59 232.6 218 57.8
Cre01.g068377 Chlamydomonas reinhardtii HOM05D004142 ORTHO05D005411 5.2e-58 229.9 306 41.5
Oeu037461.1 Olea europaea HOM05D004142 ORTHO05D005411 2.0e-54 218.0 119 89.9
Hma1.2p1_0796F.1_g219330 Hydrangea macrophylla HOM05D004142 ORTHO05D005411 4.8e-48 196.8 119 77.3
MCO08G220 Micromonas commoda HOM05D004142 ORTHO05D005411 8.5e-45 186.0 229 41.9
SHI03796 Sapria himalayana HOM05D004142 ORTHO05D005411 1.5e-44 185.3 202 47.5
TAR318G0001 Trochodendron aralioides HOM05D004142 ORTHO05D005411 1.9e-44 184.9 155 61.9
HPP92_025663 Vanilla planifolia HOM05D004142 ORTHO05D005411 4.2e-44 183.7 204 50.0
GSVIVG01004442001 Vitis vinifera HOM05D004142 ORTHO05D005411 5.2e-42 176.8 154 61.0
Cfa024410 Carpinus fangiana HOM05D004142 ORTHO05D005411 2.0e-38 164.9 304 33.2
SEGI_26341 Sequoiadendron giganteum HOM05D004142 ORTHO05D005411 3.5e-38 164.1 152 58.6
Lsat_1_v5_gn_5_64620 Lactuca sativa HOM05D004142 ORTHO05D005411 2.2e-37 161.4 132 65.9
AagrBONN_evm.TU.Sc2ySwM_228.5299 Anthoceros agrestis HOM05D004142 ORTHO05D005411 2.9e-37 161.0 161 52.8
Zm00001eb152690 Zea mays HOM05D004142 ORTHO05D000502 4.7e-35 153.7 100 74.0
SEGI_12604 Sequoiadendron giganteum HOM05D004142 ORTHO05D005411 1.5e-33 148.7 124 58.9
SEGI_03267 Sequoiadendron giganteum HOM05D004142 ORTHO05D005411 7.5e-33 146.4 136 55.1
CSS0025136 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 1.3e-32 145.6 186 50.5
AagrBONN_evm.TU.Sc2ySwM_228.5300 Anthoceros agrestis HOM05D004142 ORTHO05D005411 4.9e-32 143.7 295 33.6
FAN27G1246 Fragaria x ananassa HOM05D004142 ORTHO05D005411 2.7e-30 137.9 124 63.7
Hma1.2p1_0151F.1_g067370 Hydrangea macrophylla HOM05D004142 ORTHO05D005411 8.0e-27 126.3 114 64.0
BcaB07g31739 Brassica carinata HOM05D004142 ORTHO05D005411 3.0e-26 124.4 222 37.4
Zm00001eb177550 Zea mays HOM05D004142 ORTHO05D005411 2.0e-25 121.7 87 71.3
Zm00001eb282240 Zea mays HOM05D004142 ORTHO05D005411 4.4e-25 120.6 87 71.3
TPR.G40409 Trifolium pratense HOM05D004142 ORTHO05D005411 1.8e-23 115.2 65 84.6
BcaB07g31742 Brassica carinata HOM05D004142 ORTHO05D005411 1.0e-21 109.4 172 40.1
Oeu003432.1 Olea europaea HOM05D004142 ORTHO05D005411 1.0e-21 109.4 108 50.9
SEGI_29991 Sequoiadendron giganteum HOM05D004142 ORTHO05D031210 1.0e-21 109.4 176 38.6
Zm00001eb112060 Zea mays HOM05D004142 ORTHO05D005983 1.5e-20 105.5 74 73.0
Eucgr.H04983 Eucalyptus grandis HOM05D004142 ORTHO05D005411 2.1e-19 101.7 70 68.6
BcaC04g22984 Brassica carinata HOM05D004142 ORTHO05D005411 1.7e-16 92.0 100 54.0
Psat3g160080 Pisum sativum HOM05D004142 ORTHO05D005411 2.2e-16 91.7 152 36.2
MD11G1014300 Malus domestica HOM05D004142 ORTHO05D005411 8.3e-16 89.7 72 65.3
Medtr5g078810 Medicago truncatula HOM05D004142 ORTHO05D005411 8.3e-16 89.7 79 60.8
Lsat_1_v5_gn_5_140320 Lactuca sativa HOM05D004142 ORTHO05D036439 1.0e-13 82.8 147 39.5
Zm00001eb028530 Zea mays HOM05D004142 ORTHO05D000502 1.6e-11 75.5 50 72.0
RcHm_v2.0_Chr1g0336401 Rosa chinensis HOM05D004142 ORTHO05D005411 1.7e-08 65.5 50 62.0
SEGI_00997 Sequoiadendron giganteum HOM05D004142 ORTHO05D031210 2.2e-08 65.1 120 36.7
TPR.G18886 Trifolium pratense HOM05D000005 ORTHO05D000012 6.4e-08 63.5 71 50.7
RcHm_v2.0_Chr7g0239681 Rosa chinensis HOM05D004142 ORTHO05D005411 8.3e-08 63.2 49 61.2
CSS0016900 Camellia sinensis var. sinensis HOM05D005838 ORTHO05D007177 1.4e-07 62.4 76 40.8
Cfa026526 Carpinus fangiana HOM05D005068 ORTHO05D007561 5.4e-07 60.5 200 28.5


User provided reference genes

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