Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen10g026790 Solanum pennellii HOM05D004544 ORTHO05D005504 4.0e-254 880.9 447 100.0
CAN.G928.1 Capsicum annuum HOM05D004544 ORTHO05D005504 1.3e-228 796.2 447 88.6
Peaxi162Scf00245g00710 Petunia axillaris HOM05D004544 ORTHO05D005504 6.4e-228 793.9 447 89.3
PGSC0003DMG400007701 Solanum tuberosum HOM05D004544 ORTHO05D005504 2.2e-188 662.5 447 77.9
Solyc01g073670.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 9.5e-163 577.4 447 63.5
PGSC0003DMG400023279 Solanum tuberosum HOM05D004544 ORTHO05D005504 9.5e-163 577.4 400 77.8
Sopen01g033230 Solanum pennellii HOM05D004544 ORTHO05D005504 6.1e-162 574.7 447 63.5
CAN.G1361.4 Capsicum annuum HOM05D004544 ORTHO05D005504 8.9e-161 570.9 447 63.1
Oeu060709.1 Olea europaea HOM05D004544 ORTHO05D005504 1.5e-155 553.5 450 61.1
GSVIVG01001349001 Vitis vinifera HOM05D004544 ORTHO05D005504 2.1e-154 549.7 450 61.1
Rhsim07G0049300 Rhododendron simsii HOM05D004544 ORTHO05D005504 2.8e-154 549.3 452 62.4
Peaxi162Scf00402g00940 Petunia axillaris HOM05D004544 ORTHO05D005504 3.6e-154 548.9 446 61.0
CSS0044763 Camellia sinensis var. sinensis HOM05D004544 ORTHO05D005504 1.4e-153 547.0 452 61.7
vmacro22467 Vaccinium macrocarpon HOM05D004544 ORTHO05D005504 4.0e-153 545.4 466 61.2
Cc02_g26820 Coffea canephora HOM05D004544 ORTHO05D005504 4.9e-151 538.5 444 60.6
Solyc01g073660.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 2.4e-150 536.2 450 58.9
Dinv43503 Davidia involucrata HOM05D004544 ORTHO05D005504 5.4e-150 535.0 444 60.4
EL10Ac1g02232 Beta vulgaris HOM05D004544 ORTHO05D005504 9.2e-150 534.3 454 60.1
EL10Ac1g02233 Beta vulgaris HOM05D004544 ORTHO05D005504 9.2e-150 534.3 454 60.1
Sopen01g033220 Solanum pennellii HOM05D004544 ORTHO05D005504 1.2e-149 533.9 450 58.7
AUR62035404 Chenopodium quinoa HOM05D004544 ORTHO05D005504 1.6e-149 533.5 453 60.0
Nn2g15791 Nelumbo nucifera HOM05D004544 ORTHO05D005504 1.6e-149 533.5 452 59.5
TAR633G2617 Trochodendron aralioides HOM05D004544 ORTHO05D005504 2.7e-149 532.7 444 59.9
CAN.G1361.5 Capsicum annuum HOM05D004544 ORTHO05D005504 3.9e-148 528.9 450 58.2
Nn7g35919 Nelumbo nucifera HOM05D004544 ORTHO05D005504 7.3e-147 524.6 452 58.6
Hma1.2p1_0128F.1_g059850 Hydrangea macrophylla HOM05D004544 ORTHO05D005504 1.2e-146 523.9 413 63.4
Actinidia05839 Actinidia chinensis HOM05D004544 ORTHO05D005504 1.1e-145 520.8 448 60.0
DCAR_024995 Daucus carota HOM05D004544 ORTHO05D005504 1.4e-145 520.4 453 57.4
HanXRQChr04g0117441 Helianthus annuus HOM05D004544 ORTHO05D005504 1.4e-145 520.4 447 57.0
Atru.chr12.1432 Acer truncatum HOM05D004544 ORTHO05D005504 4.0e-145 518.8 446 58.1
MD02G1320400 Malus domestica HOM05D004544 ORTHO05D005504 5.2e-145 518.5 446 58.1
Aqoxy1G00422 Aquilegia oxysepala HOM05D004544 ORTHO05D005504 1.5e-144 516.9 444 58.3
Potri.001G232100 Populus trichocarpa HOM05D004544 ORTHO05D005504 2.0e-144 516.5 445 57.1
Potri.009G024600 Populus trichocarpa HOM05D004544 ORTHO05D005504 3.4e-144 515.8 445 55.7
RcHm_v2.0_Chr1g0313141 Rosa chinensis HOM05D004544 ORTHO05D005504 9.9e-144 514.2 447 56.8
SGA_v2.0_scaffold260G45890 Striga asiatica HOM05D004544 ORTHO05D005504 2.2e-143 513.1 467 55.9
Cfa010700 Carpinus fangiana HOM05D004544 ORTHO05D005504 2.9e-143 512.7 445 56.4
FAN01G0284 Fragaria x ananassa HOM05D004544 ORTHO05D005504 2.9e-143 512.7 447 57.3
ECA236G1315 Erigeron canadensis HOM05D004544 ORTHO05D005504 4.9e-143 511.9 442 57.0
FvH4_c5g00010 Fragaria vesca HOM05D004544 ORTHO05D005504 4.9e-143 511.9 447 57.3
MBI01_g14445_MAGBIO Magnolia biondii HOM05D004544 ORTHO05D005504 1.4e-142 510.4 458 57.2
Ciclev10031412m.g Citrus clementina HOM05D004544 ORTHO05D005504 7.1e-142 508.1 460 55.0
PGSC0003DMG400031131 Solanum tuberosum HOM05D004544 ORTHO05D005504 2.7e-141 506.1 450 56.7
CsaV3_7G031530 Cucumis sativus L. HOM05D004544 ORTHO05D005504 3.5e-141 505.8 444 57.2
CiPaw.13G000600 Carya illinoinensis HOM05D004544 ORTHO05D005504 4.6e-141 505.4 446 55.6
Sc03g0003850 Simmondsia chinensis HOM05D004544 ORTHO05D005504 1.0e-140 504.2 446 58.3
Nn2g15790 Nelumbo nucifera HOM05D004544 ORTHO05D005504 1.3e-140 503.8 442 57.2
PSO170G0355 Papaver somniferum HOM05D004544 ORTHO05D005504 1.3e-140 503.8 445 56.2
Eucgr.E04336 Eucalyptus grandis HOM05D004544 ORTHO05D005504 5.1e-140 501.9 446 56.3
Gohir.D08G037000 Gossypium hirsutum HOM05D004544 ORTHO05D005504 2.5e-139 499.6 445 55.7
PSO063G0048 Papaver somniferum HOM05D004544 ORTHO05D005504 5.6e-139 498.4 445 55.5
CANSAT11G0055 Cannabis sativa HOM05D004544 ORTHO05D005504 7.3e-139 498.0 452 54.6
Peaxi162Scf00402g00941 Petunia axillaris HOM05D004544 ORTHO05D005504 7.3e-139 498.0 450 55.3
Medtr2g062270 Medicago truncatula HOM05D004544 ORTHO05D005504 9.5e-139 497.7 447 55.9
Duzib068G1099 Durio zibethinus HOM05D004544 ORTHO05D005504 1.6e-138 496.9 446 56.5
Lalb_Chr25g0283741 Lupinus albus HOM05D004544 ORTHO05D005504 1.6e-138 496.9 446 56.5
Gorai.004G035000 Gossypium raimondii HOM05D004544 ORTHO05D005504 2.1e-138 496.5 445 55.5
ClCG09G003650 Citrullus lanatus HOM05D004544 ORTHO05D005504 6.2e-138 495.0 486 52.9
Sed0009480 Sechium edule HOM05D004544 ORTHO05D005504 8.1e-138 494.6 442 55.9
Glyma.08G158600 Glycine max HOM05D004544 ORTHO05D005504 1.4e-137 493.8 442 55.9
SalBow5G3691 Salvia bowleyana HOM05D004544 ORTHO05D005504 1.4e-137 493.8 465 54.8
HPP92_012523 Vanilla planifolia HOM05D004544 ORTHO05D005504 1.4e-137 493.8 441 56.5
Glyma.15G267700 Glycine max HOM05D004544 ORTHO05D005504 2.4e-137 493.0 446 55.2
unitig_749.g13487 Utricularia gibba HOM05D004544 ORTHO05D005504 3.1e-137 492.7 458 55.0
Thecc.08G193200 Theobroma cacao HOM05D004544 ORTHO05D005504 4.0e-137 492.3 446 55.4
AUR62041888 Chenopodium quinoa HOM05D004544 ORTHO05D005504 6.8e-137 491.5 550 49.5
Phvul.005G042600 Phaseolus vulgaris HOM05D004544 ORTHO05D005504 2.0e-136 490.0 446 54.7
TWI09G1596 Tripterygium wilfordii HOM05D004544 ORTHO05D005504 2.6e-136 489.6 450 52.9
Psat1g129360 Pisum sativum HOM05D004544 ORTHO05D005504 9.9e-136 487.6 443 55.3
THA.LOC104817137 Tarenaya hassleriana HOM05D004544 ORTHO05D005504 9.9e-136 487.6 448 54.2
VMungo1080G0174 Vigna mungo HOM05D004544 ORTHO05D005504 9.9e-136 487.6 446 54.3
CDE04G3336 Ceratophyllum demersum HOM05D004544 ORTHO05D005504 3.8e-135 485.7 443 54.2
TAR633G0112 Trochodendron aralioides HOM05D004544 ORTHO05D005504 6.4e-135 485.0 418 58.9
A04p01890 Brassica napus HOM05D004544 ORTHO05D005504 1.4e-134 483.8 450 54.0
C04p32650 Brassica napus HOM05D004544 ORTHO05D005504 1.4e-134 483.8 448 54.0
Carub.0005s2680 Capsella rubella HOM05D004544 ORTHO05D005504 1.4e-134 483.8 449 54.8
BraA04t15912Z Brassica rapa HOM05D004544 ORTHO05D005504 1.9e-134 483.4 448 53.8
Ca_03221_v3 Cicer arietinum L. HOM05D004544 ORTHO05D005504 1.9e-134 483.4 446 53.6
CARHR139460 Cardamine hirsuta HOM05D004544 ORTHO05D005504 2.4e-134 483.0 447 54.4
AL4G43240 Arabidopsis lyrata HOM05D004544 ORTHO05D005504 3.2e-134 482.6 446 53.8
BcaC02g10108 Brassica carinata HOM05D004544 ORTHO05D005504 4.2e-134 482.3 448 53.8
Thhalv10005961m.g Eutrema salsugineum HOM05D004544 ORTHO05D005504 9.2e-134 481.1 449 54.3
BcaB02g08195 Brassica carinata HOM05D004544 ORTHO05D005504 2.7e-133 479.6 448 53.6
A05p04480 Brassica napus HOM05D004544 ORTHO05D005504 3.5e-133 479.2 449 54.6
Sp5g03140 Schrenkiella parvula HOM05D004544 ORTHO05D005504 3.5e-133 479.2 447 54.4
PGR031G1320 Punica granatum HOM05D004544 ORTHO05D005504 4.6e-133 478.8 450 53.8
Sp4g26350 Schrenkiella parvula HOM05D004544 ORTHO05D005504 4.6e-133 478.8 447 54.1
AT3G60070 Arabidopsis thaliana HOM05D004544 ORTHO05D005504 6.0e-133 478.4 447 54.1
Lj3g0003623 Lotus japonicus HOM05D004544 ORTHO05D005504 1.0e-132 477.6 446 53.4
BolC4t24833H Brassica oleracea HOM05D004544 ORTHO05D005504 1.3e-132 477.2 449 53.2
BraA05t19424Z Brassica rapa HOM05D004544 ORTHO05D005504 1.3e-132 477.2 449 54.1
TPR.G16160 Trifolium pratense HOM05D004544 ORTHO05D005504 1.3e-132 477.2 444 53.8
A04p33250 Brassica napus HOM05D004544 ORTHO05D005504 1.7e-132 476.9 446 54.0
BraA04t18786Z Brassica rapa HOM05D004544 ORTHO05D005504 1.7e-132 476.9 446 54.0
Carub.0004s2687 Capsella rubella HOM05D004544 ORTHO05D005504 2.3e-132 476.5 447 53.9
AT2G44280 Arabidopsis thaliana HOM05D004544 ORTHO05D005504 3.0e-132 476.1 446 53.1
BcaB02g08807 Brassica carinata HOM05D004544 ORTHO05D005504 3.0e-132 476.1 449 53.9
BolC4t28598H Brassica oleracea HOM05D004544 ORTHO05D005504 3.0e-132 476.1 445 54.4
BcaNung06603 Brassica carinata HOM05D004544 ORTHO05D005504 3.9e-132 475.7 449 53.7
BolC4t22159H Brassica oleracea HOM05D004544 ORTHO05D005504 3.9e-132 475.7 449 53.7
AL5G42260 Arabidopsis lyrata HOM05D004544 ORTHO05D005504 5.1e-132 475.3 448 54.0
C04p05190 Brassica napus HOM05D004544 ORTHO05D005504 5.1e-132 475.3 449 53.9
Os07g0578200 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 5.1e-132 475.3 446 54.9
arahy.Tifrunner.gnm1.ann1.HLF3VC Arachis hypogaea HOM05D004544 ORTHO05D005504 8.7e-132 474.6 474 52.1
Thhalv10001436m.g Eutrema salsugineum HOM05D004544 ORTHO05D005504 8.7e-132 474.6 447 53.5
Aa31LG1G25900 Aethionema arabicum HOM05D004544 ORTHO05D005504 1.1e-131 474.2 469 51.6
Lsat_1_v5_gn_7_33840 Lactuca sativa HOM05D004544 ORTHO05D005504 1.1e-131 474.2 387 59.7
Aa31LG10G14230 Aethionema arabicum HOM05D004544 ORTHO05D005504 2.5e-131 473.0 450 54.0
arahy.Tifrunner.gnm1.ann1.ZSC88Q Arachis hypogaea HOM05D004544 ORTHO05D005504 2.5e-131 473.0 474 52.1
Manes.10G153000 Manihot esculenta HOM05D004544 ORTHO05D005504 4.7e-130 468.8 395 59.2
Zm00001eb325500 Zea mays HOM05D004544 ORTHO05D005504 1.4e-129 467.2 464 52.4
C04p70950 Brassica napus HOM05D004544 ORTHO05D005504 4.0e-129 465.7 472 51.3
Cpa.g.c29747 Carica papaya HOM05D004544 ORTHO05D005504 1.5e-128 463.8 390 59.2
CDE05G1716 Ceratophyllum demersum HOM05D004544 ORTHO05D005504 2.0e-128 463.4 481 50.7
ATR0001G054 Amborella trichopoda HOM05D004544 ORTHO05D005504 3.4e-128 462.6 385 59.7
Os03g0168000 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 4.9e-127 458.8 431 53.6
BcaB06g29367 Brassica carinata HOM05D004544 ORTHO05D005504 5.4e-126 455.3 463 51.2
Gohir.A08G026600 Gossypium hirsutum HOM05D004544 ORTHO05D005504 5.4e-126 455.3 445 52.1
Zm00001eb402450 Zea mays HOM05D004544 ORTHO05D005504 3.9e-124 449.1 446 53.1
Haze_03276 Corylus avellana HOM05D004544 ORTHO05D005504 4.8e-122 442.2 390 55.6
PGSC0003DMG400028978 Solanum tuberosum HOM05D004544 ORTHO05D005504 3.2e-118 429.5 446 52.5
Nitab4.5_0000468g0180 Nicotiana tabacum HOM05D004544 ORTHO05D005504 5.4e-118 428.7 402 55.2
Nitab4.5_0004502g0040 Nicotiana tabacum HOM05D004544 ORTHO05D005504 1.9e-115 420.2 383 55.9
Mapoly0020s0019 Marchantia polymorpha HOM05D004544 ORTHO05D005504 7.6e-112 408.3 447 48.1
Pp3c17_11410 Physcomitrium patens HOM05D004544 ORTHO05D005504 4.6e-109 399.1 438 46.1
AagrBONN_evm.TU.Sc2ySwM_368.1671 Anthoceros agrestis HOM05D004544 ORTHO05D005504 1.9e-107 393.7 423 47.5
FAN01G3148 Fragaria x ananassa HOM05D004544 ORTHO05D005504 1.9e-107 393.7 346 56.9
SMO353G0186 Selaginella moellendorffii HOM05D004544 ORTHO05D005504 1.6e-106 390.6 388 51.0
Atru.chr11.2714 Acer truncatum HOM05D004544 ORTHO05D005504 1.0e-92 344.7 447 43.8
FAN01G0042 Fragaria x ananassa HOM05D004544 ORTHO05D005504 2.5e-91 340.1 435 45.7
QL04p001964 Quercus lobata HOM05D004544 ORTHO05D005504 4.1e-89 332.8 307 56.0
Prupe.2G001700 Prunus persica HOM05D004544 ORTHO05D005504 2.0e-88 330.5 317 53.3
SEGI_30614 Sequoiadendron giganteum HOM05D004544 ORTHO05D005504 2.1e-77 293.9 255 58.4
FAN06G4582 Fragaria x ananassa HOM05D004544 ORTHO05D005504 5.3e-73 279.3 265 55.1
CARHR170380 Cardamine hirsuta HOM05D004544 ORTHO05D005504 9.4e-70 268.5 291 48.8
Sabra09G0016300 Salix brachista HOM05D004544 ORTHO05D005504 2.2e-58 230.7 309 41.7
Zm00001eb107640 Zea mays HOM05D004544 ORTHO05D005504 5.4e-57 226.1 191 56.5
MELO3C023501.2 Cucumis melo HOM05D004544 ORTHO05D005504 6.1e-53 212.6 443 32.3
Migut.B01408 Erythranthe guttata HOM05D004544 ORTHO05D005504 2.8e-45 187.2 158 61.4
Migut.B01407 Erythranthe guttata HOM05D004544 ORTHO05D005504 6.8e-44 182.6 134 64.2
SEGI_18579 Sequoiadendron giganteum HOM05D004544 ORTHO05D005504 1.5e-43 181.4 195 49.7
QL04p001975 Quercus lobata HOM05D004544 ORTHO05D005504 1.3e-42 178.3 178 48.9
Actinidia31716 Actinidia chinensis HOM05D004544 ORTHO05D005504 1.3e-39 168.3 145 58.6
MELO3C000237.2 Cucumis melo HOM05D004544 ORTHO05D005504 1.1e-30 138.7 121 60.3
Psat2g024040 Pisum sativum HOM05D004544 ORTHO05D005504 8.1e-29 132.5 133 52.6
Migut.B01409 Erythranthe guttata HOM05D004544 ORTHO05D005504 5.8e-27 126.3 135 51.1
Lj7A562T25 Lonicera japonica HOM05D004544 ORTHO05D005504 1.6e-24 118.2 97 57.7
Solyc01g089990.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 2.7e-24 117.5 94 58.5
Actinidia31717 Actinidia chinensis HOM05D004544 ORTHO05D005504 1.9e-22 111.3 118 50.8
Os06g0628032 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 8.1e-21 105.9 101 52.5
QL04p001512 Quercus lobata HOM05D004544 ORTHO05D001929 1.9e-17 94.7 72 58.3
Hund18992 Selenicereus undatus HOM05D004544 ORTHO05D005504 5.4e-17 93.2 65 64.6
Glyma.20G091501 Glycine max HOM05D004544 ORTHO05D005504 2.9e-10 70.9 59 55.9
Nitab4.5_0000468g0200 Nicotiana tabacum HOM05D004544 ORTHO05D283929 8.4e-10 69.3 173 31.8
CAN.G913.7 Capsicum annuum HOM05D004544 ORTHO05D005504 7.1e-09 66.2 50 66.0
QL04p001505 Quercus lobata HOM05D004544 ORTHO05D005504 2.7e-08 64.3 40 67.5


User provided reference genes

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