Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen10g024670 Solanum pennellii HOM05D007599 ORTHO05D009548 3.3e-43 177.9 89 100.0
Solyc08g083380.2 Solanum lycopersicum HOM05D007599 ORTHO05D009548 1.7e-39 165.6 89 95.5
PGSC0003DMG400012109 Solanum tuberosum HOM05D007599 ORTHO05D009548 1.6e-37 159.1 89 94.4
Sc07g0010220 Simmondsia chinensis HOM05D007599 ORTHO05D009548 1.5e-30 136.0 87 79.3
Lsat_1_v5_gn_3_11180 Lactuca sativa HOM05D007599 ORTHO05D009548 1.9e-30 135.6 90 81.1
GSVIVG01019698001 Vitis vinifera HOM05D007599 ORTHO05D009548 5.5e-30 134.0 86 79.1
HanXRQChr17g0534931 Helianthus annuus HOM05D007599 ORTHO05D009548 2.1e-29 132.1 89 77.5
ClCG01G001340 Citrullus lanatus HOM05D007599 ORTHO05D009548 2.7e-29 131.7 85 76.5
unitig_62.g23260 Utricularia gibba HOM05D007599 ORTHO05D009548 8.0e-29 130.2 89 74.2
AL2G14680 Arabidopsis lyrata HOM05D007599 ORTHO05D009548 1.0e-28 129.8 89 75.3
Oeu029803.1 Olea europaea HOM05D007599 ORTHO05D009548 1.0e-28 129.8 86 75.6
Sed0012861 Sechium edule HOM05D007599 ORTHO05D009548 2.3e-28 128.6 85 75.3
EL10Ac5g12394 Beta vulgaris HOM05D007599 ORTHO05D009548 1.5e-27 125.9 88 72.7
Thhalv10019387m.g Eutrema salsugineum HOM05D007599 ORTHO05D009548 4.4e-27 124.4 85 70.6
Atru.chr9.1835 Acer truncatum HOM05D007599 ORTHO05D009548 2.8e-26 121.7 86 68.6
MELO3C005802.2 Cucumis melo HOM05D007599 ORTHO05D009548 6.3e-26 120.6 85 71.8
CsaV3_5G001470 Cucumis sativus L. HOM05D007599 ORTHO05D009548 6.3e-26 120.6 85 71.8
MSTRG.12224 Avicennia marina HOM05D007599 ORTHO05D009548 1.4e-25 119.4 80 75.0
Os02g0682600 Oryza sativa ssp. japonica HOM05D007599 ORTHO05D009548 1.8e-25 119.0 86 69.8
AUR62007084 Chenopodium quinoa HOM05D007599 ORTHO05D009548 2.7e-24 115.2 88 71.6
AUR62019947 Chenopodium quinoa HOM05D007599 ORTHO05D009548 2.7e-24 115.2 88 71.6
AagrBONN_evm.TU.Sc2ySwM_117.1837 Anthoceros agrestis HOM05D007599 ORTHO05D009548 6.5e-23 110.5 86 61.6
Duzib084G0922 Durio zibethinus HOM05D007599 ORTHO05D009548 1.5e-22 109.4 89 60.7
SGA_v2.0_scaffold88G27242 Striga asiatica HOM05D007599 ORTHO05D009548 2.5e-22 108.6 125 50.4
Mapoly0015s0046 Marchantia polymorpha HOM05D007599 ORTHO05D009548 4.2e-22 107.8 86 60.5
Ciclev10023088m.g Citrus clementina HOM05D007599 ORTHO05D009548 2.1e-21 105.5 86 65.1
Pp3c25_10700 Physcomitrium patens HOM05D007599 ORTHO05D009548 2.1e-21 105.5 86 64.0
CAN.G567.112 Capsicum annuum HOM05D007599 ORTHO05D009548 4.7e-21 104.4 89 67.4
FAN18G2966 Fragaria x ananassa HOM05D007599 ORTHO05D009548 1.8e-20 102.4 109 50.5
Gohir.A12G242400 Gossypium hirsutum HOM05D007599 ORTHO05D009548 2.3e-20 102.1 89 60.7
Actinidia22230 Actinidia chinensis HOM05D007599 ORTHO05D009548 4.0e-20 101.3 86 64.0
TPR.G21312 Trifolium pratense HOM05D007599 ORTHO05D009548 4.0e-20 101.3 86 58.1
FvH4_5g07140 Fragaria vesca HOM05D007599 ORTHO05D009548 1.7e-18 95.9 77 57.1
Migut.E00717 Erythranthe guttata HOM05D007599 ORTHO05D009548 2.2e-18 95.5 67 71.6
Rhsim02G0254600 Rhododendron simsii HOM05D007599 ORTHO05D009548 3.1e-17 91.7 74 66.2
AT1G61570 Arabidopsis thaliana HOM05D007599 ORTHO05D009548 4.1e-17 91.3 89 53.9
FAN08G0537 Fragaria x ananassa HOM05D007599 ORTHO05D009548 5.4e-17 90.9 75 56.0
FAN08G0181 Fragaria x ananassa HOM05D007599 ORTHO05D009548 1.2e-16 89.7 142 38.7
RcHm_v2.0_Chr7g0187811 Rosa chinensis HOM05D007599 ORTHO05D009548 1.2e-16 89.7 83 56.6
FAN13G2393 Fragaria x ananassa HOM05D007599 ORTHO05D009548 2.7e-16 88.6 75 54.7
CDE11G1025 Ceratophyllum demersum HOM05D007599 ORTHO05D009548 3.5e-16 88.2 88 53.4
CDE09G0527 Ceratophyllum demersum HOM05D007599 ORTHO05D009548 4.5e-16 87.8 88 53.4
Sabra16G0305100 Salix brachista HOM05D007599 ORTHO05D009548 7.7e-16 87.0 48 85.4
Cre16.g650800 Chlamydomonas reinhardtii HOM05D007599 ORTHO05D009548 5.0e-15 84.3 78 44.9
Os01g0932550 Oryza sativa ssp. japonica HOM05D007599 ORTHO05D009548 5.0e-15 84.3 47 80.9
MCO15G174 Micromonas commoda HOM05D007599 ORTHO05D009548 1.9e-14 82.4 60 58.3
PRCOL_00005458 Prasinoderma coloniale HOM05D007599 ORTHO05D009548 1.9e-14 82.4 63 50.8
CiPaw.12G074700 Carya illinoinensis HOM05D007599 ORTHO05D009548 3.3e-14 81.6 86 51.2
Manes.01G000403 Manihot esculenta HOM05D007599 ORTHO05D009548 5.5e-14 80.9 86 54.7
FvH4_5g10420 Fragaria vesca HOM05D007599 ORTHO05D009548 7.2e-14 80.5 81 50.6
COL.COLO4_10843 Corchorus olitorius HOM05D007599 ORTHO05D009548 1.2e-13 79.7 89 51.7
Nitab4.5_0000357g0300 Nicotiana tabacum HOM05D007599 ORTHO05D009548 2.1e-13 79.0 89 53.9
Rhsim07G0075900 Rhododendron simsii HOM05D007599 ORTHO05D009548 2.1e-13 79.0 88 52.3
Cc08_g17030 Coffea canephora HOM05D007599 ORTHO05D009548 2.8e-13 78.6 85 52.9
AagrBONN_evm.TU.Sc2ySwM_344.1292 Anthoceros agrestis HOM05D007599 ORTHO05D009548 6.1e-13 77.4 86 47.7
CANSAT21G1781 Cannabis sativa HOM05D007599 ORTHO05D009548 6.1e-13 77.4 86 51.2
Manes.02G000300 Manihot esculenta HOM05D007599 ORTHO05D009548 6.1e-13 77.4 86 52.3
Sp5g30310 Schrenkiella parvula HOM05D007599 ORTHO05D009548 1.4e-12 76.3 85 48.2
SHI06900 Sapria himalayana HOM05D007599 ORTHO05D009548 3.0e-12 75.1 46 69.6
Duzib068G0772 Durio zibethinus HOM05D007599 ORTHO05D009548 5.2e-12 74.3 86 50.0
TWI81G0432 Tripterygium wilfordii HOM05D007599 ORTHO05D009548 1.5e-11 72.8 85 51.8
CSS0029258 Camellia sinensis var. sinensis HOM05D007599 ORTHO05D009548 2.0e-11 72.4 86 52.3
Actinidia27277 Actinidia chinensis HOM05D007599 ORTHO05D009548 2.6e-11 72.0 86 50.0
Gohir.D12G243500 Gossypium hirsutum HOM05D007599 ORTHO05D009548 7.5e-11 70.5 89 46.1
Gorai.008G260900 Gossypium raimondii HOM05D007599 ORTHO05D009548 7.5e-11 70.5 89 46.1
AL1G56360 Arabidopsis lyrata HOM05D007599 ORTHO05D009548 1.7e-10 69.3 37 86.5
FAN13G0770 Fragaria x ananassa HOM05D007599 ORTHO05D009548 2.2e-10 68.9 81 45.7
Carub.0002s0362 Capsella rubella HOM05D007599 ORTHO05D009548 2.8e-10 68.6 88 47.7
FAN04G0849 Fragaria x ananassa HOM05D007599 ORTHO05D009548 2.8e-10 68.6 81 44.4
TWI60G1211 Tripterygium wilfordii HOM05D007599 ORTHO05D009548 6.3e-10 67.4 85 49.4
Nitab4.5_0008664g0060 Nicotiana tabacum HOM05D007599 ORTHO05D009548 1.1e-09 66.6 89 50.6
BcaC08g46942 Brassica carinata HOM05D007599 ORTHO05D009548 1.4e-09 66.2 85 43.5
C06p49140 Brassica napus HOM05D007599 ORTHO05D009548 1.4e-09 66.2 85 43.5
BolC6t39948H Brassica oleracea HOM05D001180 ORTHO05D001055 1.4e-09 66.2 85 43.5
BcaC08g45594 Brassica carinata HOM05D007599 ORTHO05D009548 2.4e-09 65.5 89 47.2
C06p32780 Brassica napus HOM05D007599 ORTHO05D009548 3.1e-09 65.1 88 40.9
CARHR050820 Cardamine hirsuta HOM05D007599 ORTHO05D009548 3.1e-09 65.1 85 41.2
CBR_g48723 Chara braunii HOM05D007599 ORTHO05D009548 4.1e-09 64.7 87 46.0
Haze_09213 Corylus avellana HOM05D007599 ORTHO05D009548 4.1e-09 64.7 86 44.2
BolC6t38400H Brassica oleracea HOM05D007599 ORTHO05D009548 1.6e-08 62.8 88 39.8
TAR374G1499 Trochodendron aralioides HOM05D007599 ORTHO05D009548 3.5e-08 61.6 64 51.6
A07p29010 Brassica napus HOM05D007599 ORTHO05D009548 4.5e-08 61.2 88 39.8
BraA07t30541Z Brassica rapa HOM05D007599 ORTHO05D009548 4.5e-08 61.2 88 39.8
Haze_27758 Corylus avellana HOM05D007599 ORTHO05D009548 1.0e-07 60.1 64 39.1
BcaNung06629 Brassica carinata HOM05D007599 ORTHO05D009548 2.3e-07 58.9 89 41.6
Dinv18777 Davidia involucrata HOM05D007599 ORTHO05D009548 2.9e-07 58.5 88 43.2
BcaB02g07013 Brassica carinata HOM05D007599 ORTHO05D009548 5.0e-07 57.8 89 40.4
Cfa018742 Carpinus fangiana HOM05D005222 ORTHO05D006230 8.6e-07 57.0 69 39.1
MBI12_g00589_MAGBIO Magnolia biondii HOM05D007599 ORTHO05D009548 8.6e-07 57.0 47 59.6
Sabra12G0075900 Salix brachista HOM05D005222 ORTHO05D006230 8.6e-07 57.0 79 39.2
PSO135G0169 Papaver somniferum HOM05D007599 ORTHO05D009548 1.1e-06 56.6 87 42.5
PSO384G2353 Papaver somniferum HOM05D007599 ORTHO05D009548 1.1e-06 56.6 87 42.5
Haze_07194 Corylus avellana HOM05D005222 ORTHO05D006230 1.5e-06 56.2 69 37.7
A03p16580 Brassica napus HOM05D005222 ORTHO05D006230 1.9e-06 55.8 57 42.1
C03p19510 Brassica napus HOM05D005222 ORTHO05D006230 1.9e-06 55.8 57 42.1
BolC3t14332H Brassica oleracea HOM05D005222 ORTHO05D006230 1.9e-06 55.8 57 42.1
BraA03t10945Z Brassica rapa HOM05D005222 ORTHO05D006230 1.9e-06 55.8 57 42.1
CDE02G1328 Ceratophyllum demersum HOM05D005222 ORTHO05D006230 1.9e-06 55.8 77 32.5
Nitab4.5_0002520g0020 Nicotiana tabacum HOM05D007599 ORTHO05D009548 1.9e-06 55.8 89 44.9
Aa31LG9G70 Aethionema arabicum HOM05D007599 ORTHO05D009548 2.5e-06 55.5 89 42.7
BraA07t31618Z Brassica rapa HOM05D001180 ORTHO05D001055 3.3e-06 55.1 77 41.6
Sp6g12920 Schrenkiella parvula HOM05D005222 ORTHO05D006230 5.6e-06 54.3 68 36.8
Thhalv10015178m.g Eutrema salsugineum HOM05D005222 ORTHO05D006230 7.3e-06 53.9 79 35.4
Sc22g0003810 Simmondsia chinensis HOM05D005222 ORTHO05D006230 7.3e-06 53.9 77 33.8
AUR62029544 Chenopodium quinoa HOM05D005222 ORTHO05D006230 9.5e-06 53.5 74 32.4
AUR62034814 Chenopodium quinoa HOM05D005222 ORTHO05D006230 9.5e-06 53.5 74 32.4
Lsat_1_v5_gn_4_83361 Lactuca sativa HOM05D005222 ORTHO05D006230 9.5e-06 53.5 77 35.1


User provided reference genes

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