Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen10g024240 Solanum pennellii HOM05D004463 ORTHO05D004724 2.1e-61 240.0 261 100.0
PGSC0003DMG400026665 Solanum tuberosum HOM05D004463 ORTHO05D004724 4.4e-59 232.3 263 98.9
Solyc10g054330.3 Solanum lycopersicum HOM05D004463 ORTHO05D004724 3.1e-57 226.1 263 98.5
CAN.G95.2 Capsicum annuum HOM05D004463 ORTHO05D004724 3.4e-43 179.5 252 83.3
Actinidia27858 Actinidia chinensis HOM05D000578 ORTHO05D000422 5.0e-39 165.6 247 85.8
Actinidia00571 Actinidia chinensis HOM05D004463 ORTHO05D004724 2.1e-37 160.2 262 83.6
Nitab4.5_0001317g0040 Nicotiana tabacum HOM05D004463 ORTHO05D004724 7.5e-35 151.8 269 78.8
Cc02_g16980 Coffea canephora HOM05D004463 ORTHO05D004724 3.2e-33 146.4 245 82.9
Dinv42004 Davidia involucrata HOM05D004463 ORTHO05D004724 2.3e-31 140.2 246 83.3
Hma1.2p1_0066F.1_g035800 Hydrangea macrophylla HOM05D004463 ORTHO05D004724 5.0e-31 139.0 248 80.6
Oeu036635.1 Olea europaea HOM05D004463 ORTHO05D004724 1.1e-30 137.9 244 84.0
Hund00218 Selenicereus undatus HOM05D004463 ORTHO05D004724 2.5e-30 136.7 241 74.7
QL11p046341 Quercus lobata HOM05D004463 ORTHO05D004724 7.3e-30 135.2 245 75.5
Glyma.04G008700 Glycine max HOM05D004463 ORTHO05D004724 2.1e-29 133.7 246 76.0
CiPaw.13G045000 Carya illinoinensis HOM05D004463 ORTHO05D004724 4.7e-29 132.5 262 81.7
Oeu055628.1 Olea europaea HOM05D004463 ORTHO05D004724 1.0e-28 131.3 244 82.8
Oeu046135.1 Olea europaea HOM05D004463 ORTHO05D004724 1.4e-28 131.0 243 82.3
DCAR_022913 Daucus carota HOM05D004463 ORTHO05D004724 3.1e-28 129.8 270 79.6
ClCG02G004610 Citrullus lanatus HOM05D004463 ORTHO05D004724 8.9e-28 128.3 271 69.7
ECA232G1454 Erigeron canadensis HOM05D004463 ORTHO05D004724 8.9e-28 128.3 246 80.1
CsaV3_7G000350 Cucumis sativus L. HOM05D004463 ORTHO05D004724 1.5e-27 127.5 269 69.9
Potri.004G161800 Populus trichocarpa HOM05D004463 ORTHO05D004724 1.5e-27 127.5 261 73.6
MELO3C013423.2 Cucumis melo HOM05D004463 ORTHO05D004724 2.0e-27 127.1 269 69.9
Manes.05G152600 Manihot esculenta HOM05D004463 ORTHO05D004724 2.0e-27 127.1 262 76.0
Manes.17G001400 Manihot esculenta HOM05D004463 ORTHO05D004724 2.0e-27 127.1 261 80.5
HanXRQChr05g0143421 Helianthus annuus HOM05D004463 ORTHO05D004724 2.6e-27 126.7 261 79.7
PGR042G1049 Punica granatum HOM05D004463 ORTHO05D004724 3.4e-27 126.3 247 75.3
CiPaw.06G128800 Carya illinoinensis HOM05D004463 ORTHO05D004724 5.8e-27 125.6 246 80.5
Sed0022229 Sechium edule HOM05D004463 ORTHO05D004724 5.8e-27 125.6 269 70.3
arahy.Tifrunner.gnm1.ann1.0JY1T4 Arachis hypogaea HOM05D004463 ORTHO05D004724 7.5e-27 125.2 267 69.7
arahy.Tifrunner.gnm1.ann1.2L6AT5 Arachis hypogaea HOM05D004463 ORTHO05D004724 7.5e-27 125.2 267 69.7
Glyma.06G008500 Glycine max HOM05D004463 ORTHO05D004724 7.5e-27 125.2 249 74.7
Dinv23459 Davidia involucrata HOM05D004463 ORTHO05D004724 1.3e-26 124.4 245 79.6
VMungo1309G0843 Vigna mungo HOM05D000018 ORTHO05D001040 1.3e-26 124.4 248 74.6
Manes.15G189900 Manihot esculenta HOM05D004463 ORTHO05D004724 1.7e-26 124.0 245 78.8
CiPaw.14G035900 Carya illinoinensis HOM05D004463 ORTHO05D004724 2.9e-26 123.2 246 78.9
Phvul.009G003600 Phaseolus vulgaris HOM05D004463 ORTHO05D004724 2.9e-26 123.2 252 74.2
Sabra04G0108800 Salix brachista HOM05D004463 ORTHO05D004724 2.9e-26 123.2 243 77.0
Duzib248G1389 Durio zibethinus HOM05D004463 ORTHO05D004724 4.9e-26 122.5 265 69.4
MD10G1063900 Malus domestica HOM05D004463 ORTHO05D004724 6.4e-26 122.1 250 74.4
Gohir.D02G220400 Gossypium hirsutum HOM05D004463 ORTHO05D004724 4.1e-25 119.4 268 70.1
Gohir.A03G199000 Gossypium hirsutum HOM05D004463 ORTHO05D004724 5.4e-25 119.0 267 69.7
Ciclev10029089m.g Citrus clementina HOM05D004463 ORTHO05D004724 7.0e-25 118.6 270 68.9
Thecc.02G075900 Theobroma cacao HOM05D004463 ORTHO05D004724 9.2e-25 118.2 246 78.5
Atru.chr5.3137 Acer truncatum HOM05D004463 ORTHO05D004724 1.6e-24 117.5 265 69.4
RcHm_v2.0_Chr6g0267601 Rosa chinensis HOM05D004463 ORTHO05D004724 3.5e-24 116.3 250 74.4
GSVIVG01024180001 Vitis vinifera HOM05D004463 ORTHO05D004724 7.8e-24 115.2 244 78.3
Lj1g0018700 Lotus japonicus HOM05D004463 ORTHO05D004724 1.0e-23 114.8 272 68.8
Gorai.005G248300 Gossypium raimondii HOM05D004463 ORTHO05D004724 1.7e-23 114.0 254 63.0
CANSAT11G2458 Cannabis sativa HOM05D004463 ORTHO05D004724 2.3e-23 113.6 270 68.1
Lalb_Chr23g0265191 Lupinus albus HOM05D004463 ORTHO05D004724 2.3e-23 113.6 267 67.0
MD00G1040200 Malus domestica HOM05D004463 ORTHO05D004724 1.1e-22 111.3 252 72.2
Cpa.g.sc150.22 Carica papaya HOM05D004463 ORTHO05D004724 1.5e-22 110.9 264 68.9
Eucgr.I01324 Eucalyptus grandis HOM05D004463 ORTHO05D004724 1.5e-22 110.9 270 68.5
COL.COLO4_26036 Corchorus olitorius HOM05D004463 ORTHO05D004724 3.3e-22 109.8 266 68.0
Ca_15338_v3 Cicer arietinum L. HOM05D004463 ORTHO05D004724 4.7e-21 105.9 269 67.3
Aa31LG4G5800 Aethionema arabicum HOM05D004463 ORTHO05D004724 1.1e-20 104.8 244 70.1
TPR.G32219 Trifolium pratense HOM05D004463 ORTHO05D004724 1.1e-20 104.8 267 68.9
Rhsim05G0068600 Rhododendron simsii HOM05D004463 ORTHO05D004724 1.4e-20 104.4 263 76.8
Duzib052G0336 Durio zibethinus HOM05D004463 ORTHO05D004724 1.8e-20 104.0 246 75.6
Peaxi162Scf00538g00125 Petunia axillaris HOM05D004463 ORTHO05D004724 8.9e-20 101.7 268 38.4
Zm00001eb393940 Zea mays HOM05D004463 ORTHO05D004724 8.9e-20 101.7 253 66.0
A07p41130 Brassica napus HOM05D004463 ORTHO05D004724 4.4e-19 99.4 255 72.5
BolC6t39994H Brassica oleracea HOM05D004463 ORTHO05D004724 4.4e-19 99.4 255 72.9
FAN15G3389 Fragaria x ananassa HOM05D004463 ORTHO05D004724 5.8e-19 99.0 247 76.1
FAN20G1990 Fragaria x ananassa HOM05D004463 ORTHO05D004724 5.8e-19 99.0 251 74.9
Sed0016215 Sechium edule HOM05D004463 ORTHO05D004724 5.8e-19 99.0 263 75.3
FvH4_2g10323 Fragaria vesca HOM05D004463 ORTHO05D004724 1.3e-18 97.8 250 74.8
FAN27G0878 Fragaria x ananassa HOM05D004463 ORTHO05D004724 1.3e-18 97.8 250 74.8
Hund26868 Selenicereus undatus HOM05D004463 ORTHO05D004724 1.3e-18 97.8 266 71.1
C06p49550 Brassica napus HOM05D004463 ORTHO05D004724 2.2e-18 97.1 257 72.8
GSVIVG01009823001 Vitis vinifera HOM05D004463 ORTHO05D004724 3.7e-18 96.3 238 77.7
Prupe.8G085500 Prunus persica HOM05D004463 ORTHO05D004724 8.3e-18 95.1 265 57.7
TWI31G1301 Tripterygium wilfordii HOM05D004463 ORTHO05D004724 8.3e-18 95.1 269 63.9
FAN24G1814 Fragaria x ananassa HOM05D004463 ORTHO05D004724 1.1e-17 94.7 248 75.0
Sp5g30690 Schrenkiella parvula HOM05D004463 ORTHO05D004724 1.1e-17 94.7 251 73.3
Carub.0002s2242 Capsella rubella HOM05D004463 ORTHO05D004724 1.4e-17 94.4 244 68.4
CSS0016875 Camellia sinensis var. sinensis HOM05D004463 ORTHO05D004724 9.2e-17 91.7 241 74.7
Thhalv10019006m.g Eutrema salsugineum HOM05D004463 ORTHO05D004724 1.6e-16 90.9 253 72.7
Sabra05G0180900 Salix brachista HOM05D004463 ORTHO05D004724 1.6e-16 90.9 245 73.5
Potri.005G234700 Populus trichocarpa HOM05D004463 ORTHO05D004724 2.7e-16 90.1 245 73.5
AL2G35540 Arabidopsis lyrata HOM05D004463 ORTHO05D004724 3.5e-16 89.7 245 66.9
AT1G75560 Arabidopsis thaliana HOM05D004463 ORTHO05D004724 4.6e-16 89.4 247 68.8
Migut.B00180 Erythranthe guttata HOM05D004463 ORTHO05D004724 6.0e-16 89.0 182 86.8
Duzib132G0628 Durio zibethinus HOM05D004463 ORTHO05D004724 1.3e-15 87.8 223 76.7
Nitab4.5_0001154g0030 Nicotiana tabacum HOM05D061411 ORTHO05D004724 1.3e-15 87.8 81 74.1
Os10g0545300 Oryza sativa ssp. japonica HOM05D004463 ORTHO05D004724 1.5e-14 84.3 244 73.0
Dinv39485 Davidia involucrata HOM05D004463 ORTHO05D004724 1.9e-14 84.0 53 73.6
TPR.G32170 Trifolium pratense HOM05D004463 ORTHO05D004724 1.9e-14 84.0 54 72.2
PSO339G5998 Papaver somniferum HOM05D004463 ORTHO05D004724 2.5e-14 83.6 244 73.4
HPP92_007060 Vanilla planifolia HOM05D004463 ORTHO05D004724 4.3e-14 82.8 244 75.4
Psat5g004400 Pisum sativum HOM05D004463 ORTHO05D004724 5.6e-14 82.4 70 74.3
THA.LOC104807766 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 5.6e-14 82.4 231 68.8
BraA06t27741Z Brassica rapa HOM05D004463 ORTHO05D004724 7.3e-14 82.0 137 82.5
Nitab4.5_0001370g0080 Nicotiana tabacum HOM05D004463 ORTHO05D004724 7.3e-14 82.0 248 37.1
PSO648G0094 Papaver somniferum HOM05D004463 ORTHO05D004724 7.3e-14 82.0 244 73.0
A06p48750 Brassica napus HOM05D004463 ORTHO05D004724 2.8e-13 80.1 137 81.8
C07p63410 Brassica napus HOM05D004463 ORTHO05D004724 2.8e-13 80.1 137 81.8
BolC7t46753H Brassica oleracea HOM05D004463 ORTHO05D004724 2.8e-13 80.1 137 81.8
Psat5g004520 Pisum sativum HOM05D004463 ORTHO05D004724 3.6e-13 79.7 54 70.4
CDE02G2851 Ceratophyllum demersum HOM05D003292 ORTHO05D004237 4.7e-13 79.3 243 72.0
Atru.chr13.360 Acer truncatum HOM05D004463 ORTHO05D004724 6.2e-13 79.0 53 69.8
Rhsim11G0183400 Rhododendron simsii HOM05D000078 ORTHO05D004724 1.4e-12 77.8 54 74.1
Sc25g0002840 Simmondsia chinensis HOM05D004463 ORTHO05D004724 1.4e-12 77.8 53 67.9
THA.LOC104813804 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 1.4e-12 77.8 54 64.8
TWI36G1578 Tripterygium wilfordii HOM05D004463 ORTHO05D004724 1.4e-12 77.8 54 68.5
Thecc.08G037600 Theobroma cacao HOM05D004463 ORTHO05D004724 4.0e-12 76.3 54 66.7
THA.LOC104804116 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 1.2e-11 74.7 53 69.8
Haze_03437 Corylus avellana HOM05D004463 ORTHO05D004724 2.6e-11 73.6 217 72.4
CARHR247750 Cardamine hirsuta HOM05D004463 ORTHO05D004724 5.8e-11 72.4 54 61.1
Ciclev10002195m.g Citrus clementina HOM05D004463 ORTHO05D004724 9.9e-11 71.6 53 64.2
HPP92_007058 Vanilla planifolia HOM05D004463 ORTHO05D004724 1.3e-10 71.2 51 66.7
AUR62014431 Chenopodium quinoa HOM05D004463 ORTHO05D004724 2.9e-10 70.1 47 70.2
THA.LOC104809337 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 2.9e-10 70.1 53 60.4
SGA_v2.0_scaffold32G13220 Striga asiatica HOM05D039287 ORTHO05D004724 4.9e-10 69.3 139 79.1
MBI19_g03564_MAGBIO Magnolia biondii HOM05D004463 ORTHO05D004724 1.1e-09 68.2 215 77.2
TWI75G1243 Tripterygium wilfordii HOM05D004463 ORTHO05D004724 1.9e-09 67.4 276 53.3
SGA_v2.0_scaffold326G48748 Striga asiatica HOM05D004463 ORTHO05D004724 3.2e-09 66.6 54 61.1
CARHR068960 Cardamine hirsuta HOM05D004463 ORTHO05D004724 4.1e-09 66.2 218 68.8
TAR369G0673 Trochodendron aralioides HOM05D004463 ORTHO05D004724 5.4e-09 65.9 54 61.1
AUR62034566 Chenopodium quinoa HOM05D004463 ORTHO05D004724 9.2e-09 65.1 58 55.2
AL7G10930 Arabidopsis lyrata HOM05D004463 ORTHO05D004724 1.6e-08 64.3 50 62.0
Cfa005098 Carpinus fangiana HOM05D065658 ORTHO05D004724 2.1e-08 63.9 29 89.7
EL10Ac1g00556 Beta vulgaris HOM05D004463 ORTHO05D004724 2.7e-08 63.5 93 40.9
AUR62010398 Chenopodium quinoa HOM05D004463 ORTHO05D004724 1.0e-07 61.6 111 88.3
Nitab4.5_0010630g0040 Nicotiana tabacum HOM05D061411 ORTHO05D004724 1.7e-07 60.8 68 72.1
AUR62016820 Chenopodium quinoa HOM05D004463 ORTHO05D004724 3.9e-07 59.7 106 91.5
TAR636G2492 Trochodendron aralioides HOM05D004463 ORTHO05D004724 3.9e-07 59.7 54 55.6
Aqoxy4G02979 Aquilegia oxysepala HOM05D004463 ORTHO05D004724 5.1e-07 59.3 42 66.7
SEGI_31170 Sequoiadendron giganteum HOM05D004463 ORTHO05D004724 5.1e-07 59.3 54 55.6
PSO339G4128 Papaver somniferum HOM05D004463 ORTHO05D004724 6.6e-07 58.9 51 58.8
PSO384G1624 Papaver somniferum HOM05D004463 ORTHO05D004724 6.6e-07 58.9 51 58.8
Lj9P382T32 Lonicera japonica HOM05D004463 ORTHO05D004724 8.6e-07 58.5 150 62.7
Lsat_1_v5_gn_8_16561 Lactuca sativa HOM05D004463 ORTHO05D004724 2.5e-06 57.0 44 61.4
COL.COLO4_14964 Corchorus olitorius HOM05D004463 ORTHO05D004724 3.3e-06 56.6 54 51.9
CSS0035906 Camellia sinensis var. sinensis HOM05D004463 ORTHO05D004724 4.3e-06 56.2 54 51.9
Psat5g004560 Pisum sativum HOM05D004463 ORTHO05D004724 4.3e-06 56.2 27 85.2
Rhsim09G0164600 Rhododendron simsii HOM05D004463 ORTHO05D004724 4.3e-06 56.2 46 54.3
Lj8C86T7 Lonicera japonica HOM05D004463 ORTHO05D004724 5.6e-06 55.8 54 51.9
ATR0998G002 Amborella trichopoda HOM05D004463 ORTHO05D004724 7.3e-06 55.5 212 75.9
Duzib106G1221 Durio zibethinus HOM05D004463 ORTHO05D004724 7.3e-06 55.5 54 50.0
Manes.10G032800 Manihot esculenta HOM05D004463 ORTHO05D004724 7.3e-06 55.5 53 50.9
Thecc.10G047100 Theobroma cacao HOM05D004463 ORTHO05D004724 7.3e-06 55.5 54 50.0
Nn6g32238 Nelumbo nucifera HOM05D004463 ORTHO05D004724 9.6e-06 55.1 37 73.0
Prupe.2G231800 Prunus persica HOM05D004463 ORTHO05D004724 9.6e-06 55.1 46 56.5
GSVIVG01011366001 Vitis vinifera HOM05D002216 ORTHO05D002011 9.6e-06 55.1 54 50.0


User provided reference genes

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