Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen10g023370 Solanum pennellii HOM05D007001 ORTHO05D005587 4.5e-135 484.6 240 100.0
PGSC0003DMG400007729 Solanum tuberosum HOM05D007001 ORTHO05D005587 7.5e-114 414.1 261 83.5
Nitab4.5_0008874g0010 Nicotiana tabacum HOM05D007001 ORTHO05D005587 5.1e-70 268.5 247 61.9
Nitab4.5_0007728g0020 Nicotiana tabacum HOM05D007001 ORTHO05D005587 4.3e-69 265.4 247 62.3
Solyc10g052650.3 Solanum lycopersicum HOM05D007001 ORTHO05D005587 2.7e-63 246.1 120 99.2
Peaxi162Scf00003g01121 Petunia axillaris HOM05D007001 ORTHO05D005587 2.3e-54 216.5 239 54.0
Peaxi162Scf00016g00623 Petunia axillaris HOM05D007001 ORTHO05D005587 8.7e-54 214.5 242 52.1
Solyc01g109780.3 Solanum lycopersicum HOM05D007001 ORTHO05D005587 4.3e-53 212.2 243 51.0
PGSC0003DMG400000714 Solanum tuberosum HOM05D007001 ORTHO05D005587 9.0e-51 204.5 243 50.6
Sopen01g051970 Solanum pennellii HOM05D007001 ORTHO05D005587 2.0e-50 203.4 243 49.8
Nitab4.5_0000308g0260 Nicotiana tabacum HOM05D007001 ORTHO05D005587 2.2e-49 199.9 234 51.3
Nitab4.5_0009972g0010 Nicotiana tabacum HOM05D007001 ORTHO05D005587 9.0e-43 177.9 229 48.9
Cc02_g17350 Coffea canephora HOM05D007001 ORTHO05D005587 8.4e-41 171.4 231 45.5
GSVIVG01023803001 Vitis vinifera HOM05D007001 ORTHO05D005587 5.5e-40 168.7 235 43.4
Oeu029153.2 Olea europaea HOM05D007001 ORTHO05D005587 7.1e-40 168.3 247 42.5
Manes.04G089500 Manihot esculenta HOM05D007001 ORTHO05D005587 6.2e-36 155.2 226 40.3
CiPaw.05G066600 Carya illinoinensis HOM05D007001 ORTHO05D005587 1.4e-35 154.1 226 42.0
CSS0022058 Camellia sinensis var. sinensis HOM05D007001 ORTHO05D005587 4.5e-34 149.1 252 38.9
QL11p044451 Quercus lobata HOM05D007001 ORTHO05D005587 2.2e-33 146.7 218 41.3
Thecc.02G082800 Theobroma cacao HOM05D007001 ORTHO05D005587 3.8e-33 146.0 232 39.2
Actinidia00536 Actinidia chinensis HOM05D007001 ORTHO05D005587 2.5e-32 143.3 247 37.7
Cfa004981 Carpinus fangiana HOM05D007001 ORTHO05D005587 3.2e-32 142.9 243 39.9
CiPaw.06G134300 Carya illinoinensis HOM05D007001 ORTHO05D005587 3.2e-32 142.9 240 39.2
Haze_02407 Corylus avellana HOM05D007001 ORTHO05D005587 5.5e-32 142.1 237 41.4
Rhsim11G0179000 Rhododendron simsii HOM05D007001 ORTHO05D005587 9.3e-32 141.4 240 40.8
Duzib052G0704 Durio zibethinus HOM05D007001 ORTHO05D005587 1.6e-31 140.6 232 37.9
Manes.11G085600 Manihot esculenta HOM05D007001 ORTHO05D005587 2.1e-31 140.2 226 38.1
Migut.N01249 Erythranthe guttata HOM05D007001 ORTHO05D005587 2.7e-31 139.8 218 40.4
MD10G1072800 Malus domestica HOM05D007001 ORTHO05D005587 3.5e-31 139.4 219 39.3
Duzib132G0641 Durio zibethinus HOM05D007001 ORTHO05D005587 6.0e-31 138.7 228 37.7
COL.COLO4_25959 Corchorus olitorius HOM05D007001 ORTHO05D005587 2.3e-30 136.7 232 35.8
Oeu055597.1 Olea europaea HOM05D007001 ORTHO05D005587 2.3e-30 136.7 226 39.8
Potri.009G118651 Populus trichocarpa HOM05D007001 ORTHO05D005587 3.9e-30 136.0 231 40.3
TAR376G0762 Trochodendron aralioides HOM05D007001 ORTHO05D005587 5.1e-30 135.6 220 38.6
MBI10_g06730_MAGBIO Magnolia biondii HOM05D007001 ORTHO05D005587 6.7e-30 135.2 233 37.8
RcHm_v2.0_Chr6g0265031 Rosa chinensis HOM05D007001 ORTHO05D005587 8.7e-30 134.8 229 39.7
FvH4_2g09190 Fragaria vesca HOM05D007001 ORTHO05D005587 1.1e-29 134.4 228 39.0
Ciclev10027908m.g Citrus clementina HOM05D007001 ORTHO05D005587 1.5e-29 134.0 228 39.5
Prupe.8G094200 Prunus persica HOM05D007001 ORTHO05D005587 3.3e-29 132.9 209 40.7
Gohir.D12G029100 Gossypium hirsutum HOM05D007001 ORTHO05D005587 5.7e-29 132.1 229 37.1
Potri.004G157000 Populus trichocarpa HOM05D007001 ORTHO05D005587 5.7e-29 132.1 222 41.4
Eucgr.G01689 Eucalyptus grandis HOM05D007001 ORTHO05D005587 7.4e-29 131.7 217 38.2
MBI16_g08804_MAGBIO Magnolia biondii HOM05D007001 ORTHO05D005587 2.2e-28 130.2 217 37.8
Gorai.008G029800 Gossypium raimondii HOM05D007001 ORTHO05D005587 2.8e-28 129.8 229 36.7
vmacro02090 Vaccinium macrocarpon HOM05D007001 ORTHO05D005587 2.8e-28 129.8 225 38.7
Atru.chr5.3047 Acer truncatum HOM05D007001 ORTHO05D005587 4.8e-28 129.0 228 38.2
Actinidia36006 Actinidia chinensis HOM05D007001 ORTHO05D005587 6.3e-28 128.6 247 36.4
Sabra04G0104900 Salix brachista HOM05D007001 ORTHO05D005587 8.2e-28 128.3 240 37.9
Nn5g29665 Nelumbo nucifera HOM05D007001 ORTHO05D005587 4.1e-27 125.9 202 38.1
Sabra09G0090900 Salix brachista HOM05D007001 ORTHO05D005587 3.4e-26 122.9 255 36.5
EL10Ac9g21706 Beta vulgaris HOM05D007001 ORTHO05D005587 4.5e-26 122.5 227 36.6
MD05G1064100 Malus domestica HOM05D007001 ORTHO05D005587 4.5e-26 122.5 208 39.9
Cpa.g.sc17.13 Carica papaya HOM05D007001 ORTHO05D005587 1.7e-25 120.6 214 36.0
TWI79G0124 Tripterygium wilfordii HOM05D007001 ORTHO05D005587 1.7e-25 120.6 232 36.6
ECA240G0129 Erigeron canadensis HOM05D007001 ORTHO05D005587 5.0e-25 119.0 235 34.9
Glyma.11G116700 Glycine max HOM05D007001 ORTHO05D005587 1.9e-24 117.1 228 36.0
AUR62011300 Chenopodium quinoa HOM05D007001 ORTHO05D005587 5.5e-24 115.5 229 34.1
Migut.B00223 Erythranthe guttata HOM05D007001 ORTHO05D005587 5.5e-24 115.5 233 37.3
FAN27G0151 Fragaria x ananassa HOM05D007001 ORTHO05D005587 5.5e-24 115.5 214 38.3
Glyma.12G042500 Glycine max HOM05D007001 ORTHO05D005587 5.5e-24 115.5 230 35.7
FAN15G3137 Fragaria x ananassa HOM05D007001 ORTHO05D005587 3.6e-23 112.8 210 38.1
Lj3g0024948 Lotus japonicus HOM05D007001 ORTHO05D005587 6.1e-23 112.1 195 37.9
FAN24G0234 Fragaria x ananassa HOM05D007001 ORTHO05D005587 1.0e-22 111.3 214 37.4
Hund06244 Selenicereus undatus HOM05D007001 ORTHO05D005587 2.3e-22 110.2 225 32.9
TWI31G1402 Tripterygium wilfordii HOM05D007001 ORTHO05D005587 2.3e-22 110.2 232 31.9
Ah.01g019240 Amaranthus hybridus HOM05D007001 ORTHO05D005587 5.1e-22 109.0 226 33.2
SalBow3G2815 Salvia bowleyana HOM05D007001 ORTHO05D005587 5.1e-22 109.0 226 35.0
AUR62016758 Chenopodium quinoa HOM05D007001 ORTHO05D005587 1.5e-21 107.5 229 32.3
Oeu020745.1 Olea europaea HOM05D000342 ORTHO05D000217 3.3e-21 106.3 207 38.6
Aqoxy5G01586 Aquilegia oxysepala HOM05D007001 ORTHO05D005587 5.7e-21 105.5 228 32.9
SalBow6G2324 Salvia bowleyana HOM05D007001 ORTHO05D005587 1.7e-20 104.0 227 35.7
TPR.G22545 Trifolium pratense HOM05D007001 ORTHO05D005587 2.2e-20 103.6 221 33.9
HanXRQChr03g0074191 Helianthus annuus HOM05D007001 ORTHO05D005587 3.7e-20 102.8 219 35.2
PSO675G1875 Papaver somniferum HOM05D007001 ORTHO05D005587 4.8e-20 102.4 234 35.0
PGR042G0047 Punica granatum HOM05D007001 ORTHO05D005587 6.3e-20 102.1 233 37.3
Medtr4g070420 Medicago truncatula HOM05D007001 ORTHO05D005587 1.4e-19 100.9 232 34.1
Phvul.011G044100 Phaseolus vulgaris HOM05D007001 ORTHO05D005587 9.1e-19 98.2 228 32.9
Lalb_Chr19g0138701 Lupinus albus HOM05D007001 ORTHO05D005587 2.0e-18 97.1 223 34.5
VMungo1127G1486 Vigna mungo HOM05D007001 ORTHO05D005587 4.5e-18 95.9 230 32.6
Ca_20889_v3 Cicer arietinum L. HOM05D007001 ORTHO05D005587 7.7e-18 95.1 233 34.8
arahy.Tifrunner.gnm1.ann1.I3TCZM Arachis hypogaea HOM05D007001 ORTHO05D005587 2.2e-17 93.6 202 36.6
Sed0007775 Sechium edule HOM05D007001 ORTHO05D005587 5.0e-17 92.4 250 32.4
CDE06G0685 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 1.9e-16 90.5 197 31.5
Psat7g184200 Pisum sativum HOM05D007001 ORTHO05D005587 2.5e-16 90.1 213 32.9
ClCG11G004280 Citrullus lanatus HOM05D007001 ORTHO05D005587 4.2e-16 89.4 232 30.6
PSO170G6310 Papaver somniferum HOM05D007001 ORTHO05D005587 2.1e-15 87.0 232 31.9
PSO764G0276 Papaver somniferum HOM05D007001 ORTHO05D005587 2.1e-15 87.0 232 31.9
arahy.Tifrunner.gnm1.ann1.M1RWF9 Arachis hypogaea HOM05D007001 ORTHO05D005587 2.7e-15 86.7 202 35.1
MELO3C023308.2 Cucumis melo HOM05D007001 ORTHO05D005587 2.7e-15 86.7 223 31.4
CsaV3_2G014890 Cucumis sativus L. HOM05D007001 ORTHO05D005587 2.7e-15 86.7 236 32.2
Lalb_Chr03g0025591 Lupinus albus HOM05D007001 ORTHO05D005587 1.0e-14 84.7 226 31.0
DCAR_001566 Daucus carota HOM05D007001 ORTHO05D005587 6.7e-14 82.0 231 29.4
Lalb_Chr01g0002461 Lupinus albus HOM05D007001 ORTHO05D005587 6.7e-14 82.0 225 32.4
Aqoxy6G01158 Aquilegia oxysepala HOM05D007001 ORTHO05D005587 8.8e-14 81.6 202 33.2
AL3G52490 Arabidopsis lyrata HOM05D008776 ORTHO05D005587 3.3e-13 79.7 218 30.3
BcaB03g16349 Brassica carinata HOM05D008776 ORTHO05D005587 5.7e-13 79.0 210 32.4
Aa31LG8G13740 Aethionema arabicum HOM05D008776 ORTHO05D005587 7.4e-13 78.6 221 29.0
CDE05G0774 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 1.3e-12 77.8 222 30.2
THA.LOC104807308 Tarenaya hassleriana HOM05D007001 ORTHO05D005587 1.8e-11 73.9 216 27.3
BcaC06g36144 Brassica carinata HOM05D008776 ORTHO05D005587 3.1e-11 73.2 208 31.2
C07p07280 Brassica napus HOM05D008776 ORTHO05D005587 3.1e-11 73.2 208 31.2
BolC7t41148H Brassica oleracea HOM05D008776 ORTHO05D005587 3.1e-11 73.2 208 31.2
SGA_v2.0_scaffold125G33736 Striga asiatica HOM05D007001 ORTHO05D005587 3.1e-11 73.2 211 28.9
A07p04560 Brassica napus HOM05D008776 ORTHO05D005587 4.1e-11 72.8 207 30.0
BraA07t28245Z Brassica rapa HOM05D008776 ORTHO05D005587 4.1e-11 72.8 207 30.0
Carub.0003s3009 Capsella rubella HOM05D008776 ORTHO05D005587 4.1e-11 72.8 216 31.0
Haze_00347 Corylus avellana HOM05D002899 ORTHO05D003850 9.1e-11 71.6 56 62.5
AT2G16365 Arabidopsis thaliana HOM05D008776 ORTHO05D005587 1.2e-10 71.2 217 28.6
Sp3g29580 Schrenkiella parvula HOM05D008776 ORTHO05D005587 1.2e-10 71.2 219 29.2
BcaB08g34642 Brassica carinata HOM05D008776 ORTHO05D005587 3.4e-10 69.7 207 30.4
Thhalv10022682m.g Eutrema salsugineum HOM05D008776 ORTHO05D005587 1.0e-09 68.2 216 29.2
Lsat_1_v5_gn_9_108461 Lactuca sativa HOM05D007001 ORTHO05D005587 1.3e-09 67.8 231 30.3
DCAR_028976 Daucus carota HOM05D007001 ORTHO05D005587 8.5e-09 65.1 229 26.6
CARHR106580 Cardamine hirsuta HOM05D008776 ORTHO05D005587 1.6e-07 60.8 211 25.6
A03p45740 Brassica napus HOM05D008776 ORTHO05D005587 4.7e-07 59.3 214 28.0
BraA03t13706Z Brassica rapa HOM05D008776 ORTHO05D005587 4.7e-07 59.3 214 28.0
unitig_699.g19881 Utricularia gibba HOM05D007001 ORTHO05D005587 4.7e-07 59.3 158 31.0
BcaC01g03031 Brassica carinata HOM05D008776 ORTHO05D005587 3.0e-06 56.6 214 26.2
C03p56950 Brassica napus HOM05D008776 ORTHO05D005587 3.0e-06 56.6 214 26.2
BolC3t17973H Brassica oleracea HOM05D008776 ORTHO05D005587 3.0e-06 56.6 214 26.2


User provided reference genes

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