Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen10g022910 Solanum pennellii HOM05D005713 ORTHO05D007751 0.0e+00 1105.5 562 100.0
Solyc10g051200.2 Solanum lycopersicum HOM05D005713 ORTHO05D007751 0.0e+00 1097.4 562 98.9
PGSC0003DMG400005550 Solanum tuberosum HOM05D005713 ORTHO05D007751 1.9e-311 1071.6 562 97.2
CAN.G1.51 Capsicum annuum HOM05D005713 ORTHO05D007751 1.2e-284 982.6 563 89.0
Nitab4.5_0001361g0160 Nicotiana tabacum HOM05D005713 ORTHO05D007751 6.5e-278 960.3 567 87.7
Nitab4.5_0005152g0070 Nicotiana tabacum HOM05D005713 ORTHO05D007751 6.1e-268 927.2 566 85.3
Peaxi162Scf00003g01334 Petunia axillaris HOM05D005713 ORTHO05D007751 9.8e-266 919.8 555 84.9
CiPaw.06G137900 Carya illinoinensis HOM05D005713 ORTHO05D007751 7.3e-229 797.3 551 73.3
Oeu021892.1 Olea europaea HOM05D005713 ORTHO05D007751 5.3e-227 791.2 519 75.9
TAR381G0424 Trochodendron aralioides HOM05D005713 ORTHO05D007751 1.2e-226 790.0 565 72.0
GSVIVG01031911001 Vitis vinifera HOM05D005713 ORTHO05D007751 5.8e-226 787.7 565 72.9
Ciclev10028141m.g Citrus clementina HOM05D005713 ORTHO05D007751 9.9e-226 786.9 522 75.3
Gohir.A03G180100 Gossypium hirsutum HOM05D005713 ORTHO05D007751 1.7e-225 786.2 519 75.9
Manes.15G148000 Manihot esculenta HOM05D005713 ORTHO05D007751 2.9e-225 785.4 533 75.6
CANSAT25G3337 Cannabis sativa HOM05D005713 ORTHO05D007751 4.9e-225 784.6 514 76.5
Duzib052G0462 Durio zibethinus HOM05D005713 ORTHO05D007751 4.9e-225 784.6 521 75.4
QL11p042284 Quercus lobata HOM05D005713 ORTHO05D007751 4.9e-225 784.6 569 71.9
Gohir.D02G203009 Gossypium hirsutum HOM05D005713 ORTHO05D007751 6.4e-225 784.3 562 71.9
Gorai.005G229000 Gossypium raimondii HOM05D005713 ORTHO05D007751 6.4e-225 784.3 562 71.9
CSS0002132 Camellia sinensis var. sinensis HOM05D005713 ORTHO05D007751 1.4e-224 783.1 561 72.4
Cc02_g17920 Coffea canephora HOM05D005713 ORTHO05D007751 1.4e-224 783.1 559 71.4
COL.COLO4_32466 Corchorus olitorius HOM05D005713 ORTHO05D007751 3.2e-224 781.9 563 71.0
Thecc.02G121600 Theobroma cacao HOM05D005713 ORTHO05D007751 2.1e-223 779.2 546 72.2
Duzib132G0001 Durio zibethinus HOM05D005713 ORTHO05D007751 6.0e-223 777.7 521 73.9
Hma1.2p1_0066F.1_g036800 Hydrangea macrophylla HOM05D005713 ORTHO05D007751 3.9e-222 775.0 507 75.0
Nn1g05118 Nelumbo nucifera HOM05D005713 ORTHO05D007751 5.1e-222 774.6 550 72.5
Glyma.11G120800 Glycine max HOM05D005713 ORTHO05D007751 7.3e-221 770.8 523 73.8
Prupe.8G105700 Prunus persica HOM05D005713 ORTHO05D007751 7.3e-221 770.8 547 70.7
Atru.chr5.2933 Acer truncatum HOM05D005713 ORTHO05D007751 2.1e-220 769.2 549 71.6
Lj3g0005966 Lotus japonicus HOM05D005713 ORTHO05D007751 6.2e-220 767.7 529 72.2
Potri.009G111692 Populus trichocarpa HOM05D005713 ORTHO05D007751 1.4e-219 766.5 551 71.0
arahy.Tifrunner.gnm1.ann1.A5JIR8 Arachis hypogaea HOM05D005713 ORTHO05D007751 2.4e-219 765.8 519 74.8
Eucgr.G00476 Eucalyptus grandis HOM05D005713 ORTHO05D007751 2.4e-219 765.8 534 72.1
Potri.T124704 Populus trichocarpa HOM05D005713 ORTHO05D007751 3.1e-219 765.4 551 71.0
Sabra09G0085300 Salix brachista HOM05D005713 ORTHO05D007751 3.1e-219 765.4 559 70.3
arahy.Tifrunner.gnm1.ann1.6A0IVA Arachis hypogaea HOM05D005713 ORTHO05D007751 1.2e-218 763.5 520 74.0
MSTRG.20107 Avicennia marina HOM05D005713 ORTHO05D007751 1.2e-218 763.5 538 71.2
MD05G1072000 Malus domestica HOM05D005713 ORTHO05D007751 2.0e-218 762.7 557 69.8
EL10Ac9g21763 Beta vulgaris HOM05D005713 ORTHO05D007751 2.6e-218 762.3 534 72.1
Ca_20845_v3 Cicer arietinum L. HOM05D005713 ORTHO05D007751 2.6e-218 762.3 547 70.7
DCAR_022094 Daucus carota HOM05D005713 ORTHO05D007751 5.8e-218 761.1 566 69.8
AL1G56340 Arabidopsis lyrata HOM05D005713 ORTHO05D007751 1.3e-217 760.0 538 70.8
Sp1g36220 Schrenkiella parvula HOM05D005713 ORTHO05D007751 1.7e-217 759.6 524 72.3
AT1G49380 Arabidopsis thaliana HOM05D005713 ORTHO05D007751 2.9e-217 758.8 540 70.6
Lalb_Chr01g0002751 Lupinus albus HOM05D005713 ORTHO05D007751 2.9e-217 758.8 528 72.0
Medtr4g069080 Medicago truncatula HOM05D005713 ORTHO05D007751 3.8e-217 758.4 516 72.1
TPR.G28056 Trifolium pratense HOM05D005713 ORTHO05D007751 3.8e-217 758.4 514 72.4
Thhalv10011363m.g Eutrema salsugineum HOM05D005713 ORTHO05D007751 1.4e-216 756.5 528 72.0
VMungo1127G1847 Vigna mungo HOM05D005713 ORTHO05D007751 2.4e-216 755.7 523 71.9
SalBow6G0484 Salvia bowleyana HOM05D005713 ORTHO05D007751 9.3e-216 753.8 454 80.2
Lalb_Chr03g0025831 Lupinus albus HOM05D005713 ORTHO05D007751 2.1e-215 752.7 529 71.3
Rhsim05G0076900 Rhododendron simsii HOM05D005713 ORTHO05D007751 3.5e-215 751.9 565 68.3
RcHm_v2.0_Chr6g0262411 Rosa chinensis HOM05D005713 ORTHO05D007751 3.5e-215 751.9 552 69.4
Lsat_1_v5_gn_5_173381 Lactuca sativa HOM05D005713 ORTHO05D007751 6.0e-215 751.1 538 71.2
Phvul.011G047800 Phaseolus vulgaris HOM05D005713 ORTHO05D007751 1.0e-214 750.4 537 70.0
Migut.B00270 Erythranthe guttata HOM05D005713 ORTHO05D007751 1.3e-214 750.0 528 70.8
BcaB04g17346 Brassica carinata HOM05D005713 ORTHO05D007751 3.0e-214 748.8 512 72.7
A08p04030 Brassica napus HOM05D005713 ORTHO05D007751 5.1e-214 748.0 508 73.4
THA.LOC104800072 Tarenaya hassleriana HOM05D005713 ORTHO05D007751 6.7e-214 747.7 512 73.2
BcaC07g37058 Brassica carinata HOM05D005713 ORTHO05D007751 1.9e-213 746.1 510 72.7
HanXRQChr01g0011551 Helianthus annuus HOM05D005713 ORTHO05D007751 2.5e-213 745.7 535 71.0
PGR042G3676 Punica granatum HOM05D005713 ORTHO05D007751 3.3e-213 745.3 553 69.1
CsaV3_7G010230 Cucumis sativus L. HOM05D005713 ORTHO05D007751 5.6e-213 744.6 544 68.6
Aqoxy5G01712 Aquilegia oxysepala HOM05D005713 ORTHO05D007751 7.4e-213 744.2 519 72.8
BolC8t47226H Brassica oleracea HOM05D005713 ORTHO05D007751 9.6e-213 743.8 510 72.5
C08p04230 Brassica napus HOM05D005713 ORTHO05D007751 1.6e-212 743.0 510 72.5
Cpa.g.sc62.105 Carica papaya HOM05D005713 ORTHO05D007751 1.6e-212 743.0 523 73.4
PSO700G0051 Papaver somniferum HOM05D005713 ORTHO05D007751 1.6e-212 743.0 521 72.6
CARHR039390 Cardamine hirsuta HOM05D005713 ORTHO05D007751 2.8e-212 742.3 544 69.3
ClCG02G005320 Citrullus lanatus HOM05D005713 ORTHO05D007751 2.8e-212 742.3 543 68.9
Lj5C201T4 Lonicera japonica HOM05D005713 ORTHO05D007751 3.7e-212 741.9 554 70.2
BraA08t32431Z Brassica rapa HOM05D005713 ORTHO05D007751 4.8e-212 741.5 507 72.6
MD10G1082600 Malus domestica HOM05D005713 ORTHO05D007751 8.1e-212 740.7 519 72.3
Aa31LG10G4600 Aethionema arabicum HOM05D005713 ORTHO05D007751 1.1e-211 740.3 536 70.1
Psat7g185160 Pisum sativum HOM05D005713 ORTHO05D007751 1.1e-211 740.3 514 71.8
FvH4_2g07950 Fragaria vesca HOM05D005713 ORTHO05D007751 2.4e-211 739.2 546 68.5
PSO170G4048 Papaver somniferum HOM05D005713 ORTHO05D007751 5.8e-210 734.6 521 72.2
ECA248G1707 Erigeron canadensis HOM05D005713 ORTHO05D007751 4.9e-209 731.5 484 75.4
CDE02G0286 Ceratophyllum demersum HOM05D005713 ORTHO05D007751 1.6e-207 726.5 510 72.0
ATR0733G225 Amborella trichopoda HOM05D005713 ORTHO05D007751 7.9e-207 724.2 445 78.7
FAN24G3015 Fragaria x ananassa HOM05D005713 ORTHO05D007751 1.0e-206 723.8 560 66.6
Dinv23558 Davidia involucrata HOM05D005713 ORTHO05D007751 1.8e-206 723.0 515 71.7
Sed0025253 Sechium edule HOM05D005713 ORTHO05D007751 2.5e-205 719.2 473 74.6
AUR62011361 Chenopodium quinoa HOM05D005713 ORTHO05D007751 6.2e-204 714.5 507 71.6
SGA_v2.0_scaffold58G20572 Striga asiatica HOM05D005713 ORTHO05D007751 6.2e-204 714.5 525 69.9
MELO3C018406.2 Cucumis melo HOM05D005713 ORTHO05D007751 1.4e-203 713.4 553 66.9
Carub.0001s3855 Capsella rubella HOM05D005713 ORTHO05D007751 1.8e-203 713.0 424 79.7
vmacro19441 Vaccinium macrocarpon HOM05D005713 ORTHO05D007751 3.4e-202 708.8 612 61.8
Os03g0769600 Oryza sativa ssp. japonica HOM05D005713 ORTHO05D007751 7.6e-202 707.6 455 76.0
AUR62016700 Chenopodium quinoa HOM05D005713 ORTHO05D007751 3.8e-201 705.3 517 69.8
FAN15G0466 Fragaria x ananassa HOM05D005713 ORTHO05D007751 1.1e-200 703.7 560 65.2
Hund06219 Selenicereus undatus HOM05D005713 ORTHO05D007751 1.1e-200 703.7 424 80.2
Zm00001eb058790 Zea mays HOM05D005713 ORTHO05D007751 1.1e-200 703.7 462 74.2
unitig_0.g67 Utricularia gibba HOM05D005713 ORTHO05D007751 5.5e-200 701.4 562 63.5
HPP92_018386 Vanilla planifolia HOM05D005713 ORTHO05D007751 1.9e-197 693.0 475 72.0
MBI16_g10988_MAGBIO Magnolia biondii HOM05D005713 ORTHO05D007751 7.4e-197 691.0 555 65.8
Haze_02421 Corylus avellana HOM05D005713 ORTHO05D007751 1.5e-181 640.2 547 64.0
Hma1.2p1_0066F.1_g036810 Hydrangea macrophylla HOM05D005713 ORTHO05D007751 4.1e-179 632.1 375 81.6
QL11p041571 Quercus lobata HOM05D005713 ORTHO05D007751 1.7e-177 626.7 419 73.7
SEGI_30892 Sequoiadendron giganteum HOM05D005713 ORTHO05D007751 2.9e-177 625.9 513 62.2
Actinidia17829 Actinidia chinensis HOM05D005713 ORTHO05D007751 7.7e-162 574.7 386 76.4
Mapoly0160s0024 Marchantia polymorpha HOM05D005713 ORTHO05D007751 2.3e-153 546.6 451 59.6
Pp3c5_6360 Physcomitrium patens HOM05D005713 ORTHO05D007751 7.2e-152 541.6 508 54.9
Sc18g0004720 Simmondsia chinensis HOM05D005713 ORTHO05D007751 1.3e-148 530.8 424 65.1
SMO172G0143 Selaginella moellendorffii HOM05D005713 ORTHO05D007751 7.0e-147 525.0 438 59.6
CDE01G0298 Ceratophyllum demersum HOM05D005713 ORTHO05D007751 2.3e-145 520.0 388 69.1
CBR_g46847 Chara braunii HOM05D005713 ORTHO05D007751 2.8e-135 486.5 494 52.2
CAN.G322.106 Capsicum annuum HOM05D005713 ORTHO05D007751 2.0e-133 480.3 560 52.5
PGSC0003DMG400025182 Solanum tuberosum HOM05D005713 ORTHO05D007751 5.1e-129 465.7 563 51.9
Solyc01g109330.3 Solanum lycopersicum HOM05D005713 ORTHO05D007751 2.0e-125 453.8 564 50.2
Nitab4.5_0004280g0110 Nicotiana tabacum HOM05D005713 ORTHO05D007751 1.9e-123 447.2 545 52.1
Peaxi162Scf00016g00106 Petunia axillaris HOM05D005713 ORTHO05D007751 1.9e-123 447.2 541 51.6
Nitab4.5_0004287g0050 Nicotiana tabacum HOM05D005713 ORTHO05D007751 4.4e-117 426.0 537 51.0
Sopen01g051520 Solanum pennellii HOM05D005713 ORTHO05D007751 1.2e-114 417.9 452 54.0
AagrBONN_evm.TU.Sc2ySwM_228.2211 Anthoceros agrestis HOM05D005713 ORTHO05D007751 2.1e-114 417.2 476 48.1
Cre13.g575000 Chlamydomonas reinhardtii HOM05D005713 ORTHO05D007751 2.0e-109 400.6 516 45.2
MCO11G018 Micromonas commoda HOM05D005713 ORTHO05D007751 1.5e-104 384.4 477 44.7
TAR381G0857 Trochodendron aralioides HOM05D005713 ORTHO05D007751 5.6e-104 382.5 255 75.3
PRCOL_00003752 Prasinoderma coloniale HOM05D005713 ORTHO05D007751 5.7e-80 302.8 481 39.1
QL07p047677 Quercus lobata HOM05D005713 ORTHO05D007751 9.7e-80 302.0 177 82.5
Glyma.12G045850 Glycine max HOM05D005713 ORTHO05D007751 2.8e-71 273.9 169 78.7
PGSC0003DMG400003326 Solanum tuberosum HOM05D005713 ORTHO05D021118 6.3e-55 219.5 132 84.8
PGSC0003DMG400019020 Solanum tuberosum HOM05D005713 ORTHO05D021118 1.5e-51 208.4 132 80.3
QL07p047674 Quercus lobata HOM05D005713 ORTHO05D021118 2.0e-48 198.0 217 56.7
Glyma.12G045901 Glycine max HOM05D005713 ORTHO05D007751 7.0e-46 189.5 162 61.7
AUR62026246 Chenopodium quinoa HOM05D005713 ORTHO05D138102 1.4e-38 165.2 139 61.9
FAN19G2312 Fragaria x ananassa HOM05D005713 ORTHO05D007751 1.2e-34 152.1 131 59.5
Actinidia27913 Actinidia chinensis HOM05D005713 ORTHO05D007751 7.5e-32 142.9 85 81.2
Lj5g0025918 Lotus japonicus HOM05D005713 ORTHO05D236034 4.6e-29 133.7 105 61.9
SEGI_20066 Sequoiadendron giganteum HOM05D005713 ORTHO05D007751 1.5e-24 118.6 125 46.4
FvH4_1g29190 Fragaria vesca HOM05D005713 ORTHO05D007751 3.9e-20 104.0 104 55.8
FAN20G0809 Fragaria x ananassa HOM05D005713 ORTHO05D007751 5.2e-17 93.6 58 75.9
Sopen04g004520 Solanum pennellii HOM05D001773 ORTHO05D001710 9.2e-14 82.8 70 64.3
Hma1.2p1_0066F.1_g036790 Hydrangea macrophylla HOM05D005713 ORTHO05D021118 9.5e-11 72.8 96 44.8
Actinidia27912 Actinidia chinensis HOM05D005713 ORTHO05D021118 1.8e-09 68.6 131 42.0
QL11p041469 Quercus lobata HOM05D005713 ORTHO05D338114 2.9e-07 61.2 38 73.7
QL11p041915 Quercus lobata HOM05D005713 ORTHO05D021118 2.4e-06 58.2 146 40.4
Sopen01g006830 Solanum pennellii HOM05D001773 ORTHO05D001710 2.4e-06 58.2 37 75.7


User provided reference genes

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