Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen10g022880 Solanum pennellii HOM05D000248 ORTHO05D000146 1.0e-94 350.5 246 100.0
PGSC0003DMG400005548 Solanum tuberosum HOM05D000248 ORTHO05D000146 1.2e-39 167.5 237 46.8
PGSC0003DMG400047193 Solanum tuberosum HOM05D000248 ORTHO05D000146 6.9e-30 135.2 190 49.5
CAN.G504.72 Capsicum annuum HOM05D000248 ORTHO05D000146 5.3e-22 109.0 218 35.8
PGSC0003DMG400010681 Solanum tuberosum HOM05D000248 ORTHO05D000146 1.5e-21 107.5 215 35.3
CAN.G504.71 Capsicum annuum HOM05D000248 ORTHO05D000146 4.2e-19 99.4 219 32.9
CAN.G504.33 Capsicum annuum HOM05D000248 ORTHO05D000146 7.1e-19 98.6 74 64.9
CAN.G504.76 Capsicum annuum HOM05D000248 ORTHO05D000146 7.1e-19 98.6 70 67.1
CAN.G504.68 Capsicum annuum HOM05D000248 ORTHO05D000146 2.7e-18 96.7 227 32.6
CAN.G504.69 Capsicum annuum HOM05D000248 ORTHO05D000146 8.7e-17 91.7 71 64.8
CAN.G504.70 Capsicum annuum HOM05D000248 ORTHO05D000146 8.7e-17 91.7 71 62.0
CAN.G1417.8 Capsicum annuum HOM05D000248 ORTHO05D000146 7.4e-16 88.6 204 32.8
Nitab4.5_0002586g0030 Nicotiana tabacum HOM05D000248 ORTHO05D000146 4.8e-15 85.9 150 37.3
Solyc11g006740.3 Solanum lycopersicum HOM05D000248 ORTHO05D000146 4.0e-14 82.8 183 34.4
ClCG06G013180 Citrullus lanatus HOM05D000248 ORTHO05D000146 6.9e-14 82.0 141 39.0
CAN.G143.1 Capsicum annuum HOM05D000248 ORTHO05D000146 2.2e-12 77.0 217 30.4
PGSC0003DMG400023965 Solanum tuberosum HOM05D000248 ORTHO05D000146 6.4e-12 75.5 179 31.8
QL09p029288 Quercus lobata HOM05D000248 ORTHO05D000146 8.4e-12 75.1 213 28.6
PGSC0003DMG400021065 Solanum tuberosum HOM05D000248 ORTHO05D000146 8.4e-12 75.1 222 30.2
PGSC0003DMG400023964 Solanum tuberosum HOM05D000248 ORTHO05D000146 8.4e-12 75.1 222 28.8
QL09p029329 Quercus lobata HOM05D000248 ORTHO05D000146 1.9e-11 73.9 158 34.2
Peaxi162Scf00725g00411 Petunia axillaris HOM05D000248 ORTHO05D000146 2.4e-11 73.6 55 63.6
Sp2g22810 Schrenkiella parvula HOM05D000248 ORTHO05D000146 2.4e-11 73.6 150 31.3
CAN.G143.3 Capsicum annuum HOM05D000248 ORTHO05D000146 5.5e-11 72.4 216 29.2
Nitab4.5_0002750g0070 Nicotiana tabacum HOM05D007794 ORTHO05D009810 1.2e-10 71.2 188 30.3
Peaxi162Scf00297g01017 Petunia axillaris HOM05D000248 ORTHO05D000146 1.2e-10 71.2 69 53.6
Nitab4.5_0001786g0060 Nicotiana tabacum HOM05D000248 ORTHO05D000146 2.7e-10 70.1 50 68.0
Solyc10g051160.2 Solanum lycopersicum HOM05D000248 ORTHO05D000146 2.7e-10 70.1 166 34.9
QL09p029222 Quercus lobata HOM05D000248 ORTHO05D000146 7.9e-10 68.6 201 27.4
GSVIVG01003897001 Vitis vinifera HOM05D000248 ORTHO05D000146 7.9e-10 68.6 184 32.1
SGA_v2.0_scaffold80G25909 Striga asiatica HOM05D000248 ORTHO05D000146 1.0e-09 68.2 155 31.6
CANSAT78G0701 Cannabis sativa HOM05D000248 ORTHO05D000146 2.3e-09 67.0 184 29.3
CsaV3_1G031340 Cucumis sativus L. HOM05D000248 ORTHO05D000146 5.1e-09 65.9 199 28.1
Peaxi162Scf00125g00038 Petunia axillaris HOM05D000248 ORTHO05D000146 5.1e-09 65.9 63 57.1
CiPaw.08G159200 Carya illinoinensis HOM05D000248 ORTHO05D000146 6.7e-09 65.5 210 27.1
Manes.08G114900 Manihot esculenta HOM05D000248 ORTHO05D000146 6.7e-09 65.5 211 29.4
QL09p029204 Quercus lobata HOM05D000248 ORTHO05D000146 8.7e-09 65.1 194 27.8
QL09p029257 Quercus lobata HOM05D000248 ORTHO05D000146 8.7e-09 65.1 201 27.4
QL09p029277 Quercus lobata HOM05D000248 ORTHO05D000146 8.7e-09 65.1 213 27.2
Lsat_1_v5_gn_7_74040 Lactuca sativa HOM05D000248 ORTHO05D000146 1.1e-08 64.7 191 28.8
AT2G02360 Arabidopsis thaliana HOM05D000248 ORTHO05D000146 1.5e-08 64.3 181 30.4
AT5G24560 Arabidopsis thaliana HOM05D000248 ORTHO05D000146 1.5e-08 64.3 156 31.4
A08p22100 Brassica napus HOM05D000005 ORTHO05D010626 1.5e-08 64.3 181 24.9
Dinv28029 Davidia involucrata HOM05D000248 ORTHO05D000146 1.5e-08 64.3 166 28.3
Duzib151G0107 Durio zibethinus HOM05D000248 ORTHO05D000146 1.5e-08 64.3 182 29.7
Rhsim09G0053400 Rhododendron simsii HOM05D000248 ORTHO05D000146 1.5e-08 64.3 174 30.5
HanXRQChr11g0339141 Helianthus annuus HOM05D000248 ORTHO05D000146 1.9e-08 63.9 191 27.7
Peaxi162Scf00037g01716 Petunia axillaris HOM05D000248 ORTHO05D000146 1.9e-08 63.9 187 27.3
VMungo0720G2270 Vigna mungo HOM05D000248 ORTHO05D000146 1.9e-08 63.9 176 27.3
GSVIVG01003907001 Vitis vinifera HOM05D000248 ORTHO05D000146 1.9e-08 63.9 182 29.7
Cc09_g03240 Coffea canephora HOM05D000248 ORTHO05D000146 2.5e-08 63.5 186 30.6
Lalb_Chr02g0149351 Lupinus albus HOM05D000248 ORTHO05D000146 3.3e-08 63.2 184 28.8
GSVIVG01031160001 Vitis vinifera HOM05D000248 ORTHO05D000146 3.3e-08 63.2 169 28.4
Dinv41282 Davidia involucrata HOM05D000248 ORTHO05D000146 4.3e-08 62.8 178 32.0
Thhalv10004797m.g Eutrema salsugineum HOM05D000248 ORTHO05D000146 4.3e-08 62.8 177 27.1
FvH4_4g03690 Fragaria vesca HOM05D000248 ORTHO05D000146 4.3e-08 62.8 166 31.3
FAN12G1355 Fragaria x ananassa HOM05D000248 ORTHO05D000146 4.3e-08 62.8 166 31.3
MELO3C017489.2 Cucumis melo HOM05D000248 ORTHO05D000146 7.4e-08 62.0 198 26.3
Medtr1g079180 Medicago truncatula HOM05D000248 ORTHO05D000146 7.4e-08 62.0 183 27.3
Nitab4.5_0006179g0020 Nicotiana tabacum HOM05D000248 ORTHO05D000146 7.4e-08 62.0 181 27.6
RcHm_v2.0_Chr4g0385231 Rosa chinensis HOM05D000248 ORTHO05D000146 7.4e-08 62.0 206 27.2
Medtr1g079200 Medicago truncatula HOM05D000248 ORTHO05D000146 1.3e-07 61.2 170 27.6
VMungo0720G0681 Vigna mungo HOM05D000248 ORTHO05D000146 1.3e-07 61.2 183 27.9
arahy.Tifrunner.gnm1.ann1.693WQ9 Arachis hypogaea HOM05D000248 ORTHO05D000146 1.6e-07 60.8 141 30.5
Thhalv10004855m.g Eutrema salsugineum HOM05D000248 ORTHO05D000146 1.6e-07 60.8 133 33.1
Potri.013G012600 Populus trichocarpa HOM05D000248 ORTHO05D000146 1.6e-07 60.8 200 27.5
Ca_09976_v3 Cicer arietinum L. HOM05D000248 ORTHO05D000146 2.1e-07 60.5 182 27.5
Ca_09992_v3 Cicer arietinum L. HOM05D000248 ORTHO05D000146 2.1e-07 60.5 182 27.5
MELO3C017485.2 Cucumis melo HOM05D000248 ORTHO05D000146 2.1e-07 60.5 201 27.9
Duzib212G0092 Durio zibethinus HOM05D000248 ORTHO05D000146 2.1e-07 60.5 173 30.1
FvH4_4g00363 Fragaria vesca HOM05D000248 ORTHO05D000146 2.1e-07 60.5 162 28.4
TWI73G0020 Tripterygium wilfordii HOM05D000248 ORTHO05D000146 2.1e-07 60.5 182 29.7
arahy.Tifrunner.gnm1.ann1.4C01KS Arachis hypogaea HOM05D000248 ORTHO05D000146 2.8e-07 60.1 148 30.4
CsaV3_1G031360 Cucumis sativus L. HOM05D000248 ORTHO05D000146 2.8e-07 60.1 172 30.2
FvH4_4g00362 Fragaria vesca HOM05D000248 ORTHO05D000146 2.8e-07 60.1 202 29.7
HanXRQChr09g0269381 Helianthus annuus HOM05D000248 ORTHO05D000146 2.8e-07 60.1 204 27.5
Thecc.04G207800 Theobroma cacao HOM05D000248 ORTHO05D000146 2.8e-07 60.1 177 31.1
AL5G11510 Arabidopsis lyrata HOM05D000248 ORTHO05D000146 3.7e-07 59.7 180 26.1
arahy.Tifrunner.gnm1.ann1.CIN5QE Arachis hypogaea HOM05D000248 ORTHO05D000146 3.7e-07 59.7 141 30.5
BcaC06g31239 Brassica carinata HOM05D000248 ORTHO05D000146 3.7e-07 59.7 179 28.5
BcaC06g34061 Brassica carinata HOM05D000248 ORTHO05D000146 3.7e-07 59.7 180 26.1
BolC7t43823H Brassica oleracea HOM05D000248 ORTHO05D000146 3.7e-07 59.7 180 26.1
FAN14G1981 Fragaria x ananassa HOM05D000248 ORTHO05D000146 3.7e-07 59.7 199 29.6
QL04p027246 Quercus lobata HOM05D000005 ORTHO05D000012 3.7e-07 59.7 188 27.1
RcHm_v2.0_Chr4g0385251 Rosa chinensis HOM05D000248 ORTHO05D000146 3.7e-07 59.7 172 29.1
Sabra13G0011300 Salix brachista HOM05D000248 ORTHO05D000146 3.7e-07 59.7 212 27.8
Thecc.04G208000 Theobroma cacao HOM05D000248 ORTHO05D000146 3.7e-07 59.7 173 30.6
TAR636G3458 Trochodendron aralioides HOM05D000248 ORTHO05D000146 3.7e-07 59.7 191 29.3
MSTRG.28002 Avicennia marina HOM05D000248 ORTHO05D000146 4.8e-07 59.3 207 28.5
Prupe.1G003900 Prunus persica HOM05D000248 ORTHO05D000146 4.8e-07 59.3 168 28.0
Solyc01g100000.3 Solanum lycopersicum HOM05D000248 ORTHO05D000146 4.8e-07 59.3 186 26.9
TWI73G0512 Tripterygium wilfordii HOM05D000248 ORTHO05D000146 4.8e-07 59.3 180 31.1
TWI73G0915 Tripterygium wilfordii HOM05D000248 ORTHO05D000146 4.8e-07 59.3 180 31.1
Actinidia38904 Actinidia chinensis HOM05D000248 ORTHO05D000146 6.2e-07 58.9 209 27.8
BcaC06g34059 Brassica carinata HOM05D000248 ORTHO05D000146 6.2e-07 58.9 178 26.4
BolC7t43828H Brassica oleracea HOM05D000248 ORTHO05D000146 6.2e-07 58.9 178 26.4
Carub.0006s2242 Capsella rubella HOM05D000248 ORTHO05D000146 6.2e-07 58.9 173 26.0
Manes.18G077300 Manihot esculenta HOM05D000248 ORTHO05D000146 6.2e-07 58.9 191 28.3
QL09p029160 Quercus lobata HOM05D000248 ORTHO05D000146 6.2e-07 58.9 212 25.9
Actinidia11401 Actinidia chinensis HOM05D000248 ORTHO05D000146 8.1e-07 58.5 186 28.0
AT2G02240 Arabidopsis thaliana HOM05D000248 ORTHO05D000146 8.1e-07 58.5 180 26.1
MSTRG.9906 Avicennia marina HOM05D000248 ORTHO05D000146 8.1e-07 58.5 160 33.8
CANSAT78G0697 Cannabis sativa HOM05D000248 ORTHO05D000146 8.1e-07 58.5 183 29.5
MD12G1255400 Malus domestica HOM05D000248 ORTHO05D000146 8.1e-07 58.5 164 26.8
Phvul.001G013300 Phaseolus vulgaris HOM05D000248 ORTHO05D000146 8.1e-07 58.5 179 29.1
Phvul.001G013400 Phaseolus vulgaris HOM05D000248 ORTHO05D000146 8.1e-07 58.5 179 29.1
ECA236G2239 Erigeron canadensis HOM05D000248 ORTHO05D000146 1.1e-06 58.2 54 53.7
Eucgr.H00082 Eucalyptus grandis HOM05D000248 ORTHO05D000146 1.1e-06 58.2 178 28.1
Gohir.D11G280300 Gossypium hirsutum HOM05D000248 ORTHO05D000146 1.1e-06 58.2 183 26.8
Gorai.007G302500 Gossypium raimondii HOM05D000248 ORTHO05D000146 1.1e-06 58.2 183 26.8
Prupe.1G003600 Prunus persica HOM05D000248 ORTHO05D000146 1.1e-06 58.2 169 26.6
vmacro15738 Vaccinium macrocarpon HOM05D000248 ORTHO05D000146 1.1e-06 58.2 191 26.7
A06p43680 Brassica napus HOM05D000248 ORTHO05D000146 1.4e-06 57.8 180 25.6
BraA06t27249Z Brassica rapa HOM05D000248 ORTHO05D000146 1.4e-06 57.8 180 26.1
Cfa006294 Carpinus fangiana HOM05D000248 ORTHO05D000146 1.4e-06 57.8 189 28.6
MELO3C017487.2 Cucumis melo HOM05D000248 ORTHO05D000146 1.4e-06 57.8 203 25.6
Duzib106G0428 Durio zibethinus HOM05D000248 ORTHO05D000146 1.4e-06 57.8 184 26.1
Lj5g0009115 Lotus japonicus HOM05D000248 ORTHO05D000146 1.4e-06 57.8 181 24.3
Medtr1g079370 Medicago truncatula HOM05D000248 ORTHO05D000146 1.4e-06 57.8 184 25.5
Phvul.007G116000 Phaseolus vulgaris HOM05D000248 ORTHO05D000146 1.4e-06 57.8 182 26.9
MSTRG.27735 Avicennia marina HOM05D000248 ORTHO05D000146 1.8e-06 57.4 165 31.5
ECA236G0781 Erigeron canadensis HOM05D000248 ORTHO05D000146 1.8e-06 57.4 200 27.5
Hma1.2p1_0691F.1_g204080 Hydrangea macrophylla HOM05D000248 ORTHO05D000146 1.8e-06 57.4 183 26.2
Lsat_1_v5_gn_2_46860 Lactuca sativa HOM05D000041 ORTHO05D000452 1.8e-06 57.4 176 30.1
Lj5g0027549 Lotus japonicus HOM05D000248 ORTHO05D000146 1.8e-06 57.4 185 28.1
Sp2g13630 Schrenkiella parvula HOM05D000248 ORTHO05D000146 1.8e-06 57.4 189 25.9
AL5G11590 Arabidopsis lyrata HOM05D000248 ORTHO05D000146 2.4e-06 57.0 180 30.0
BcaB07g30347 Brassica carinata HOM05D000248 ORTHO05D000146 2.4e-06 57.0 177 24.3
Cfa021117 Carpinus fangiana HOM05D000248 ORTHO05D000146 2.4e-06 57.0 187 25.1
CsaV3_3G011100 Cucumis sativus L. HOM05D000248 ORTHO05D000146 2.4e-06 57.0 186 29.6
Dinv40367 Davidia involucrata HOM05D000248 ORTHO05D000146 2.4e-06 57.0 202 24.3
Duzib168G0389 Durio zibethinus HOM05D000248 ORTHO05D000146 2.4e-06 57.0 192 26.6
FAN22G0610 Fragaria x ananassa HOM05D000248 ORTHO05D000146 2.4e-06 57.0 164 25.6
vmacro15737 Vaccinium macrocarpon HOM05D000248 ORTHO05D000146 2.4e-06 57.0 178 30.3
arahy.Tifrunner.gnm1.ann1.00DB5A Arachis hypogaea HOM05D000248 ORTHO05D000146 3.1e-06 56.6 183 24.6
arahy.Tifrunner.gnm1.ann1.I84R0N Arachis hypogaea HOM05D000248 ORTHO05D000146 3.1e-06 56.6 183 24.6
BcaC06g31240 Brassica carinata HOM05D000248 ORTHO05D000146 3.1e-06 56.6 180 25.6
Haze_04516 Corylus avellana HOM05D000248 ORTHO05D000146 3.1e-06 56.6 193 28.5
Glyma.10G150400 Glycine max HOM05D000248 ORTHO05D000146 3.1e-06 56.6 189 26.5
Lsat_1_v5_gn_2_44281 Lactuca sativa HOM05D000248 ORTHO05D000146 3.1e-06 56.6 176 27.8
Lj2A50T28 Lonicera japonica HOM05D000248 ORTHO05D000146 3.1e-06 56.6 207 27.5
PGR031G1037 Punica granatum HOM05D000248 ORTHO05D000146 3.1e-06 56.6 181 30.4
Aqoxy2G03759 Aquilegia oxysepala HOM05D000248 ORTHO05D000146 4.0e-06 56.2 205 27.3
BolC7t43830H Brassica oleracea HOM05D000248 ORTHO05D000146 4.0e-06 56.2 183 25.7
CSS0040464 Camellia sinensis var. sinensis HOM05D000248 ORTHO05D000146 4.0e-06 56.2 55 50.9
Glyma.20G220200 Glycine max HOM05D000248 ORTHO05D000146 4.0e-06 56.2 183 25.7
RcHm_v2.0_Chr7g0223921 Rosa chinensis HOM05D000248 ORTHO05D000146 4.0e-06 56.2 172 27.9
TAR365G0006 Trochodendron aralioides HOM05D000248 ORTHO05D000146 4.0e-06 56.2 197 27.9
Actinidia19771 Actinidia chinensis HOM05D000248 ORTHO05D000146 5.3e-06 55.8 54 51.9
AT1G56240 Arabidopsis thaliana HOM05D000248 ORTHO05D000146 5.3e-06 55.8 53 54.7
Lsat_1_v5_gn_2_44160 Lactuca sativa HOM05D000041 ORTHO05D000452 5.3e-06 55.8 176 29.5
Actinidia21504 Actinidia chinensis HOM05D000248 ORTHO05D000146 6.9e-06 55.5 54 51.9
AT1G56250 Arabidopsis thaliana HOM05D000248 ORTHO05D000146 6.9e-06 55.5 55 54.5
BcaC06g31238 Brassica carinata HOM05D000248 ORTHO05D000146 6.9e-06 55.5 185 27.0
CSS0005023 Camellia sinensis var. sinensis HOM05D000248 ORTHO05D000146 6.9e-06 55.5 180 30.6
Carub.0002s0792 Capsella rubella HOM05D000248 ORTHO05D000146 6.9e-06 55.5 55 56.4
CAN.G694.11 Capsicum annuum HOM05D000248 ORTHO05D000146 6.9e-06 55.5 58 50.0
Ciclev10005670m.g Citrus clementina HOM05D000248 ORTHO05D000146 6.9e-06 55.5 181 28.2
RcHm_v2.0_Chr3g0450281 Rosa chinensis HOM05D000248 ORTHO05D000146 6.9e-06 55.5 160 28.1
Sc09g0001710 Simmondsia chinensis HOM05D000248 ORTHO05D000146 6.9e-06 55.5 209 26.8
PGSC0003DMG400023354 Solanum tuberosum HOM05D000248 ORTHO05D000146 6.9e-06 55.5 58 50.0
vmacro15739 Vaccinium macrocarpon HOM05D000248 ORTHO05D000146 6.9e-06 55.5 58 50.0
EL10Ac9g21236 Beta vulgaris HOM05D000248 ORTHO05D000146 9.0e-06 55.1 190 26.3
BcaB04g20155 Brassica carinata HOM05D000248 ORTHO05D000146 9.0e-06 55.1 55 54.5
BcaC09g49572 Brassica carinata HOM05D000248 ORTHO05D000146 9.0e-06 55.1 55 54.5
A01p27310 Brassica napus HOM05D000248 ORTHO05D000146 9.0e-06 55.1 56 53.6
A02p32770 Brassica napus HOM05D000248 ORTHO05D000146 9.0e-06 55.1 183 25.7
C01p35100 Brassica napus HOM05D000248 ORTHO05D000146 9.0e-06 55.1 55 54.5
BolC1t03471H Brassica oleracea HOM05D000248 ORTHO05D000146 9.0e-06 55.1 55 54.5
BraA01t02867Z Brassica rapa HOM05D000248 ORTHO05D000146 9.0e-06 55.1 56 53.6
BraA02t08292Z Brassica rapa HOM05D000248 ORTHO05D000146 9.0e-06 55.1 183 25.7
CSS0020814 Camellia sinensis var. sinensis HOM05D000248 ORTHO05D000146 9.0e-06 55.1 53 50.9
CSS0048390 Camellia sinensis var. sinensis HOM05D000248 ORTHO05D000146 9.0e-06 55.1 52 53.8
CARHR289800 Cardamine hirsuta HOM05D000248 ORTHO05D000146 9.0e-06 55.1 55 54.5
Cc03_g07480 Coffea canephora HOM05D000248 ORTHO05D000146 9.0e-06 55.1 175 29.1
Duzib212G0383 Durio zibethinus HOM05D000248 ORTHO05D000146 9.0e-06 55.1 173 30.1
ECA238G0005 Erigeron canadensis HOM05D000092 ORTHO05D000042 9.0e-06 55.1 187 28.9
Eucgr.H01641 Eucalyptus grandis HOM05D000248 ORTHO05D000146 9.0e-06 55.1 168 30.4
HanXRQChr06g0182121 Helianthus annuus HOM05D000248 ORTHO05D000146 9.0e-06 55.1 54 50.0
Medtr1g078470 Medicago truncatula HOM05D000248 ORTHO05D000146 9.0e-06 55.1 167 27.5


User provided reference genes

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