Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen10g022090 Solanum pennellii HOM05D004388 ORTHO05D005106 9.8e-57 223.4 126 100.0
PGSC0003DMG400006208 Solanum tuberosum HOM05D004388 ORTHO05D005106 1.6e-51 206.1 126 95.2
Peaxi162Scf00016g01338 Petunia axillaris HOM05D004388 ORTHO05D005106 3.0e-37 158.7 117 79.5
Solyc01g109040.4 Solanum lycopersicum HOM05D004388 ORTHO05D005106 1.5e-36 156.4 127 76.4
Sopen01g051240 Solanum pennellii HOM05D004388 ORTHO05D005106 5.6e-36 154.5 127 76.4
PGSC0003DMG402025831 Solanum tuberosum HOM05D004388 ORTHO05D005106 3.6e-35 151.8 127 74.0
Cc02_g18220 Coffea canephora HOM05D004388 ORTHO05D005106 6.2e-35 151.0 126 69.8
Nitab4.5_0001401g0180 Nicotiana tabacum HOM05D004388 ORTHO05D005106 6.2e-35 151.0 126 74.6
Nitab4.5_0008194g0060 Nicotiana tabacum HOM05D004388 ORTHO05D005106 3.1e-34 148.7 126 73.0
CAN.G322.84 Capsicum annuum HOM05D004388 ORTHO05D005106 2.6e-33 145.6 127 73.2
Peaxi162Scf00684g00563 Petunia axillaris HOM05D004388 ORTHO05D005106 3.4e-33 145.2 120 71.7
Hma1.2p1_1527F.1_g289065 Hydrangea macrophylla HOM05D004388 ORTHO05D005106 4.4e-33 144.8 124 67.7
Hma1.2p1_0584F.1_g183220 Hydrangea macrophylla HOM05D004388 ORTHO05D005106 1.7e-32 142.9 128 66.4
Oeu034076.1 Olea europaea HOM05D004388 ORTHO05D005106 1.9e-31 139.4 126 66.7
CSS0016442 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 4.1e-31 138.3 127 69.3
CSS0020304 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 1.2e-30 136.7 125 67.2
Nn5g29406 Nelumbo nucifera HOM05D004388 ORTHO05D005106 1.2e-30 136.7 127 65.4
Thecc.02G028000 Theobroma cacao HOM05D004388 ORTHO05D005106 1.6e-30 136.3 127 68.5
EL10Ac1g01755 Beta vulgaris HOM05D004388 ORTHO05D005106 2.7e-30 135.6 127 64.6
ClCG02G005540 Citrullus lanatus HOM05D004388 ORTHO05D005106 3.5e-30 135.2 127 66.9
FvH4_7g04430 Fragaria vesca HOM05D004388 ORTHO05D005106 3.5e-30 135.2 125 66.4
FAN06G3575 Fragaria x ananassa HOM05D004388 ORTHO05D005106 3.5e-30 135.2 125 66.4
Migut.B00292 Erythranthe guttata HOM05D004388 ORTHO05D005106 6.0e-30 134.4 120 65.0
FAN06G4461 Fragaria x ananassa HOM05D004388 ORTHO05D005106 6.0e-30 134.4 125 66.4
FvH4_1g27200 Fragaria vesca HOM05D004388 ORTHO05D005106 7.8e-30 134.0 124 66.9
FAN10G0172 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.0e-29 133.7 125 65.6
FAN27G3490 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.0e-29 133.7 124 67.7
FAN03G2535 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.7e-29 132.9 124 66.9
MD05G1072400 Malus domestica HOM05D004388 ORTHO05D005106 1.7e-29 132.9 124 63.7
MELO3C018419.2 Cucumis melo HOM05D004388 ORTHO05D005106 3.0e-29 132.1 127 64.6
FvH4_2g07330 Fragaria vesca HOM05D004388 ORTHO05D005106 3.0e-29 132.1 124 66.9
FAN19G2330 Fragaria x ananassa HOM05D004388 ORTHO05D005106 3.0e-29 132.1 124 66.1
FAN24G3543 Fragaria x ananassa HOM05D004388 ORTHO05D005106 3.0e-29 132.1 124 66.9
Nn6g32144 Nelumbo nucifera HOM05D004388 ORTHO05D005106 3.0e-29 132.1 129 63.6
RcHm_v2.0_Chr3g0487591 Rosa chinensis HOM05D004388 ORTHO05D005106 3.0e-29 132.1 125 64.8
GSVIVG01009587001 Vitis vinifera HOM05D004388 ORTHO05D005106 3.9e-29 131.7 126 60.3
MSTRG.20123 Avicennia marina HOM05D004388 ORTHO05D005106 5.1e-29 131.3 117 65.0
PSO170G0356 Papaver somniferum HOM05D004388 ORTHO05D005106 5.1e-29 131.3 126 62.7
TAR376G0986 Trochodendron aralioides HOM05D004388 ORTHO05D005106 5.1e-29 131.3 127 63.8
AUR62040093 Chenopodium quinoa HOM05D004388 ORTHO05D005106 8.6e-29 130.6 125 61.6
CsaV3_7G010090 Cucumis sativus L. HOM05D004388 ORTHO05D005106 8.6e-29 130.6 127 63.8
Dinv36015 Davidia involucrata HOM05D004388 ORTHO05D005106 8.6e-29 130.6 130 61.5
FAN15G0910 Fragaria x ananassa HOM05D004388 ORTHO05D005106 8.6e-29 130.6 124 66.1
Sabra09G0082900 Salix brachista HOM05D004388 ORTHO05D005106 8.6e-29 130.6 126 62.7
COL.COLO4_17768 Corchorus olitorius HOM05D004388 ORTHO05D005106 1.1e-28 130.2 125 64.0
Gohir.D02G236000 Gossypium hirsutum HOM05D004388 ORTHO05D005106 1.5e-28 129.8 128 63.3
CSS0032006 Camellia sinensis var. sinensis HOM05D004388 ORTHO05D005106 1.9e-28 129.4 101 69.3
AUR62033874 Chenopodium quinoa HOM05D004388 ORTHO05D005106 1.9e-28 129.4 128 61.7
Ciclev10030439m.g Citrus clementina HOM05D004388 ORTHO05D005106 1.9e-28 129.4 127 60.6
FAN26G1198 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.9e-28 129.4 124 65.3
FAN28G0470 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.9e-28 129.4 124 65.3
DCAR_001610 Daucus carota HOM05D004388 ORTHO05D005106 2.5e-28 129.0 124 65.3
QL03p018404 Quercus lobata HOM05D004388 ORTHO05D005106 2.5e-28 129.0 119 63.9
TAR625G0696 Trochodendron aralioides HOM05D004388 ORTHO05D005106 2.5e-28 129.0 128 62.5
Duzib052G1120 Durio zibethinus HOM05D004388 ORTHO05D005106 3.3e-28 128.6 126 61.9
CiPaw.05G058500 Carya illinoinensis HOM05D004388 ORTHO05D005106 4.3e-28 128.3 120 64.2
QL11p039202 Quercus lobata HOM05D004388 ORTHO05D005106 4.3e-28 128.3 119 63.0
Gorai.005G264100 Gossypium raimondii HOM05D004388 ORTHO05D005106 5.6e-28 127.9 128 62.5
FAN23G2994 Fragaria x ananassa HOM05D004388 ORTHO05D005106 9.6e-28 127.1 124 64.5
Potri.009G108700 Populus trichocarpa HOM05D004388 ORTHO05D005106 9.6e-28 127.1 126 63.5
Eucgr.G01518 Eucalyptus grandis HOM05D004388 ORTHO05D005106 1.2e-27 126.7 126 61.9
Lsat_1_v5_gn_7_88020 Lactuca sativa HOM05D004388 ORTHO05D005106 1.2e-27 126.7 126 63.5
Sed0011034 Sechium edule HOM05D004388 ORTHO05D005106 1.2e-27 126.7 127 65.4
FAN28G0922 Fragaria x ananassa HOM05D004388 ORTHO05D005106 1.6e-27 126.3 124 64.5
Prupe.8G112900 Prunus persica HOM05D004388 ORTHO05D005106 2.1e-27 125.9 128 64.8
ECA236G2461 Erigeron canadensis HOM05D004388 ORTHO05D005106 2.8e-27 125.6 128 64.8
Gorai.002G214600 Gossypium raimondii HOM05D004388 ORTHO05D005106 2.8e-27 125.6 124 62.9
HanXRQChr16g0506081 Helianthus annuus HOM05D004388 ORTHO05D005106 2.8e-27 125.6 126 62.7
Cfa004944 Carpinus fangiana HOM05D004388 ORTHO05D005106 3.6e-27 125.2 121 62.0
Gohir.D01G173000 Gossypium hirsutum HOM05D004388 ORTHO05D005106 4.7e-27 124.8 126 61.1
ATR0733G197 Amborella trichopoda HOM05D004388 ORTHO05D005106 6.2e-27 124.4 126 61.9
DCAR_000094 Daucus carota HOM05D004388 ORTHO05D005106 6.2e-27 124.4 124 61.3
DCAR_029046 Daucus carota HOM05D004388 ORTHO05D005106 6.2e-27 124.4 124 61.3
Potri.004G147300 Populus trichocarpa HOM05D004388 ORTHO05D005106 8.1e-27 124.0 126 59.5
Gohir.A03G214500 Gossypium hirsutum HOM05D004388 ORTHO05D005106 1.1e-26 123.6 128 60.9
Gohir.A01G181900 Gossypium hirsutum HOM05D004388 ORTHO05D005106 1.4e-26 123.2 124 62.9
PGR042G3241 Punica granatum HOM05D004388 ORTHO05D005106 1.4e-26 123.2 116 65.5
Manes.15G145400 Manihot esculenta HOM05D004388 ORTHO05D005106 1.8e-26 122.9 128 61.7
unitig_0.g849 Utricularia gibba HOM05D004388 ORTHO05D005106 3.1e-26 122.1 118 63.6
Ah.09g229630 Amaranthus hybridus HOM05D004388 ORTHO05D005106 4.0e-26 121.7 128 60.2
Lalb_Chr08g0245721 Lupinus albus HOM05D004388 ORTHO05D005106 4.0e-26 121.7 126 60.3
Thecc.08G017000 Theobroma cacao HOM05D004388 ORTHO05D005106 4.0e-26 121.7 128 58.6
Duzib132G0841 Durio zibethinus HOM05D004388 ORTHO05D005106 5.2e-26 121.3 126 57.9
Aqoxy6G00936 Aquilegia oxysepala HOM05D004388 ORTHO05D005106 6.8e-26 120.9 124 58.9
Ca_12477_v3 Cicer arietinum L. HOM05D004388 ORTHO05D005106 8.9e-26 120.6 124 58.1
CANSAT25G3863 Cannabis sativa HOM05D004388 ORTHO05D005106 1.5e-25 119.8 126 58.7
COL.COLO4_26416 Corchorus olitorius HOM05D004388 ORTHO05D005106 1.5e-25 119.8 127 58.3
HanXRQChr04g0128391 Helianthus annuus HOM05D004388 ORTHO05D005106 1.5e-25 119.8 121 61.2
TWI56G1138 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 2.0e-25 119.4 127 55.9
Cfa018482 Carpinus fangiana HOM05D004388 ORTHO05D005106 2.6e-25 119.0 125 57.6
SalBow6G5992 Salvia bowleyana HOM05D004388 ORTHO05D005106 3.4e-25 118.6 119 60.5
Atru.BG.71.p Acer truncatum HOM05D004388 ORTHO05D005106 4.4e-25 118.2 94 74.5
Glyma.07G163600 Glycine max HOM05D004388 ORTHO05D005106 4.4e-25 118.2 126 57.9
Lalb_Chr11g0062471 Lupinus albus HOM05D004388 ORTHO05D005106 4.4e-25 118.2 126 58.7
Potri.014G037000 Populus trichocarpa HOM05D004388 ORTHO05D005106 5.8e-25 117.9 126 56.3
VMungo1309G1869 Vigna mungo HOM05D004388 ORTHO05D005106 5.8e-25 117.9 127 60.6
Glyma.04G035900 Glycine max HOM05D004388 ORTHO05D005106 7.6e-25 117.5 125 55.2
Duzib248G1645 Durio zibethinus HOM05D004388 ORTHO05D005106 9.9e-25 117.1 126 58.7
unitig_21.g20762 Utricularia gibba HOM05D004388 ORTHO05D005106 9.9e-25 117.1 124 61.3
arahy.Tifrunner.gnm1.ann1.2I4SWN Arachis hypogaea HOM05D004388 ORTHO05D005106 1.3e-24 116.7 129 55.8
Duzib248G0675 Durio zibethinus HOM05D004388 ORTHO05D005106 1.3e-24 116.7 109 63.3
Phvul.009G061900 Phaseolus vulgaris HOM05D004388 ORTHO05D005106 1.3e-24 116.7 127 59.1
unitig_744.g24243 Utricularia gibba HOM05D004388 ORTHO05D005106 1.3e-24 116.7 124 60.5
MBI16_g31481_MAGBIO Magnolia biondii HOM05D004388 ORTHO05D005106 1.7e-24 116.3 127 54.3
Duzib248G0127 Durio zibethinus HOM05D004388 ORTHO05D005106 2.9e-24 115.5 126 58.7
Lalb_Chr10g0095391 Lupinus albus HOM05D004388 ORTHO05D005106 2.9e-24 115.5 124 58.1
Cpa.g.sc64.17 Carica papaya HOM05D004388 ORTHO05D005106 4.9e-24 114.8 127 56.7
Sc15g0006590 Simmondsia chinensis HOM05D004388 ORTHO05D005106 6.4e-24 114.4 121 59.5
PSO541G0781 Papaver somniferum HOM05D004388 ORTHO05D005106 8.4e-24 114.0 127 60.6
Glyma.06G035900 Glycine max HOM05D004388 ORTHO05D005106 1.1e-23 113.6 126 57.9
CiPaw.16G051700 Carya illinoinensis HOM05D004388 ORTHO05D005106 1.4e-23 113.2 125 57.6
Medtr1g034260 Medicago truncatula HOM05D004388 ORTHO05D005106 1.4e-23 113.2 130 56.9
THA.LOC104803691 Tarenaya hassleriana HOM05D004388 ORTHO05D005106 1.9e-23 112.8 128 55.5
SGA_v2.0_scaffold58G20597 Striga asiatica HOM05D004388 ORTHO05D005106 2.4e-23 112.5 126 56.3
BcaB01g03018 Brassica carinata HOM05D004388 ORTHO05D005106 3.2e-23 112.1 97 67.0
FAN20G1062 Fragaria x ananassa HOM05D004388 ORTHO05D005106 5.4e-23 111.3 96 70.8
MD10G1086700 Malus domestica HOM05D004388 ORTHO05D005106 5.4e-23 111.3 116 61.2
Manes.05G168800 Manihot esculenta HOM05D004388 ORTHO05D005106 5.4e-23 111.3 126 52.4
BcaC07g40816 Brassica carinata HOM05D004388 ORTHO05D005106 7.1e-23 110.9 98 67.3
C08p38090 Brassica napus HOM05D004388 ORTHO05D005106 7.1e-23 110.9 98 67.3
BolC8t51384H Brassica oleracea HOM05D004388 ORTHO05D005106 7.1e-23 110.9 98 67.3
CARHR118500 Cardamine hirsuta HOM05D004388 ORTHO05D005106 9.3e-23 110.5 128 56.2
Gorai.010G015700 Gossypium raimondii HOM05D004388 ORTHO05D005106 9.3e-23 110.5 126 54.0
Carub.0004s0666 Capsella rubella HOM05D004388 ORTHO05D005106 1.2e-22 110.2 130 57.7
Lj1g0026402 Lotus japonicus HOM05D004388 ORTHO05D005106 1.2e-22 110.2 128 57.8
AL4G19340 Arabidopsis lyrata HOM05D004388 ORTHO05D005106 1.6e-22 109.8 130 57.7
A09p55160 Brassica napus HOM05D004388 ORTHO05D005106 1.6e-22 109.8 126 57.9
BraA09t40924Z Brassica rapa HOM05D004388 ORTHO05D005106 1.6e-22 109.8 126 57.9
Glyma.20G008600 Glycine max HOM05D004388 ORTHO05D005106 1.6e-22 109.8 128 56.2
TWI12G0249 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 1.6e-22 109.8 130 56.2
Phvul.003G011200 Phaseolus vulgaris HOM05D004388 ORTHO05D005106 2.1e-22 109.4 118 55.9
Sp4g07480 Schrenkiella parvula HOM05D004388 ORTHO05D005106 2.1e-22 109.4 126 59.5
AT2G26500 Arabidopsis thaliana HOM05D004388 ORTHO05D005106 3.5e-22 108.6 130 56.9
Sabra14G0026600 Salix brachista HOM05D004388 ORTHO05D005106 6.0e-22 107.8 126 53.2
VMungo1215G1405 Vigna mungo HOM05D004388 ORTHO05D005106 6.0e-22 107.8 118 54.2
Thhalv10001257m.g Eutrema salsugineum HOM05D004388 ORTHO05D005106 1.3e-21 106.7 129 56.6
Aa31LG5G9370 Aethionema arabicum HOM05D004388 ORTHO05D005106 2.3e-21 105.9 126 55.6
TWI36G1636 Tripterygium wilfordii HOM05D004388 ORTHO05D005106 2.3e-21 105.9 129 51.2
Lalb_Chr01g0003011 Lupinus albus HOM05D004388 ORTHO05D005106 3.0e-21 105.5 103 62.1
HPP92_017776 Vanilla planifolia HOM05D004388 ORTHO05D005106 2.5e-20 102.4 109 55.0
Psat6g097040 Pisum sativum HOM05D004388 ORTHO05D005106 1.3e-19 100.1 132 52.3
Actinidia00479 Actinidia chinensis HOM05D000395 ORTHO05D005106 1.1e-18 97.1 125 52.0
arahy.Tifrunner.gnm1.ann1.ISKM3Z Arachis hypogaea HOM05D004388 ORTHO05D005106 1.1e-18 97.1 126 53.2
Os03g0765900 Oryza sativa ssp. japonica HOM05D004388 ORTHO05D005106 1.4e-18 96.7 115 49.6
arahy.Tifrunner.gnm1.ann1.RG9LRA Arachis hypogaea HOM05D004388 ORTHO05D005106 2.4e-18 95.9 125 52.8
Rhsim05G0079000 Rhododendron simsii HOM05D004388 ORTHO05D005106 4.0e-18 95.1 129 51.9
Eucgr.I01216 Eucalyptus grandis HOM05D004388 ORTHO05D005106 1.2e-17 93.6 113 54.0
Zm00001eb214080 Zea mays HOM05D004388 ORTHO05D005106 4.2e-15 85.1 126 44.4
Pp3c6_20300 Physcomitrium patens HOM05D004388 ORTHO05D005106 7.1e-15 84.3 123 42.3
AagrBONN_evm.TU.Sc2ySwM_228.5818 Anthoceros agrestis HOM05D004388 ORTHO05D005106 1.6e-14 83.2 103 48.5
Pp3c5_10730 Physcomitrium patens HOM05D004388 ORTHO05D005106 2.1e-14 82.8 127 41.7
Zm00001eb058590 Zea mays HOM05D004388 ORTHO05D005106 1.3e-13 80.1 118 43.2
GSVIVG01031853001 Vitis vinifera HOM05D008110 ORTHO05D005106 3.9e-13 78.6 71 62.0
Potri.002G130000 Populus trichocarpa HOM05D004388 ORTHO05D005106 1.1e-12 77.0 105 45.7
TPR.G40836 Trifolium pratense HOM05D004388 ORTHO05D005106 7.4e-12 74.3 73 61.6
SMO361G0239 Selaginella moellendorffii HOM05D004388 ORTHO05D005106 8.1e-11 70.9 94 47.9
BcaB08g35304 Brassica carinata HOM05D004388 ORTHO05D005106 9.0e-10 67.4 47 80.9
Mapoly0043s0110 Marchantia polymorpha HOM05D004388 ORTHO05D005106 9.0e-10 67.4 126 38.1
Oeu010570.1 Olea europaea HOM05D000395 ORTHO05D000088 1.5e-09 66.6 81 54.3
CDE01G0191 Ceratophyllum demersum HOM05D004388 ORTHO05D005106 2.6e-09 65.9 56 67.9
CBR_g48936 Chara braunii HOM05D004388 ORTHO05D005106 4.5e-09 65.1 127 40.2
Psat4g068600 Pisum sativum HOM05D004388 ORTHO05D005106 4.2e-07 58.5 109 42.2
CAN.G322.45 Capsicum annuum HOM05D000224 ORTHO05D000337 1.2e-06 57.0 64 57.8


User provided reference genes

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