Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen10g021450 Solanum pennellii HOM05D007022 ORTHO05D008868 6.5e-92 340.9 196 100.0
Nitab4.5_0002543g0040 Nicotiana tabacum HOM05D007022 ORTHO05D008868 2.5e-35 152.9 138 60.9
PGSC0003DMG400006210 Solanum tuberosum HOM05D007022 ORTHO05D008868 2.5e-30 136.3 102 71.6
Rhsim11G0166300 Rhododendron simsii HOM05D007022 ORTHO05D008868 2.1e-29 133.3 142 54.9
Nitab4.5_0005758g0030 Nicotiana tabacum HOM05D007022 ORTHO05D008868 6.0e-29 131.7 118 57.6
Nitab4.5_0012979g0010 Nicotiana tabacum HOM05D007022 ORTHO05D008868 7.9e-29 131.3 116 59.5
Atru.chr5.2709 Acer truncatum HOM05D007022 ORTHO05D008868 1.0e-28 131.0 126 55.6
Hma1.2p1_0370F.1_g137830 Hydrangea macrophylla HOM05D007022 ORTHO05D008868 6.7e-28 128.3 119 54.6
vmacro02203 Vaccinium macrocarpon HOM05D007022 ORTHO05D008868 1.5e-27 127.1 142 53.5
Actinidia00443 Actinidia chinensis HOM05D007022 ORTHO05D008868 4.3e-27 125.6 122 54.1
Lsat_1_v5_gn_9_110080 Lactuca sativa HOM05D007022 ORTHO05D008868 4.3e-27 125.6 132 52.3
Actinidia12953 Actinidia chinensis HOM05D007022 ORTHO05D008868 1.3e-26 124.0 122 53.3
Dinv42154 Davidia involucrata HOM05D007022 ORTHO05D008868 1.3e-26 124.0 119 53.8
CSS0015269 Camellia sinensis var. sinensis HOM05D007022 ORTHO05D008868 2.1e-26 123.2 122 53.3
Nitab4.5_0007480g0010 Nicotiana tabacum HOM05D007022 ORTHO05D008868 2.8e-26 122.9 127 53.5
GSVIVG01031751001 Vitis vinifera HOM05D007022 ORTHO05D008868 3.7e-26 122.5 68 76.5
Ciclev10029362m.g Citrus clementina HOM05D007022 ORTHO05D008868 2.4e-25 119.8 120 56.7
Potri.009G102400 Populus trichocarpa HOM05D007022 ORTHO05D008868 2.4e-25 119.8 126 50.0
Solyc01g108200.3 Solanum lycopersicum HOM05D007022 ORTHO05D008868 2.4e-25 119.8 88 62.5
Sopen01g050430 Solanum pennellii HOM05D007022 ORTHO05D008868 2.4e-25 119.8 88 62.5
Lj9A358T46 Lonicera japonica HOM05D007022 ORTHO05D008868 3.1e-25 119.4 119 51.3
Hund00236 Selenicereus undatus HOM05D007022 ORTHO05D008868 4.0e-25 119.0 149 46.3
Haze_10076 Corylus avellana HOM05D007022 ORTHO05D008868 6.9e-25 118.2 138 48.6
CsaV3_3G018570 Cucumis sativus L. HOM05D007022 ORTHO05D008868 6.9e-25 118.2 137 53.3
Lalb_Chr16g0384701 Lupinus albus HOM05D007022 ORTHO05D008868 1.2e-24 117.5 139 50.4
Manes.07G082700 Manihot esculenta HOM05D007022 ORTHO05D008868 1.5e-24 117.1 68 75.0
CDE04G2473 Ceratophyllum demersum HOM05D007022 ORTHO05D008868 2.0e-24 116.7 73 72.6
ClCG05G010000 Citrullus lanatus HOM05D007022 ORTHO05D008868 2.0e-24 116.7 138 50.0
Dinv23619 Davidia involucrata HOM05D007022 ORTHO05D008868 2.0e-24 116.7 121 51.2
HanXRQChr09g0251721 Helianthus annuus HOM05D007022 ORTHO05D008868 2.0e-24 116.7 117 54.7
PGSC0003DMG401025892 Solanum tuberosum HOM05D007022 ORTHO05D008868 2.0e-24 116.7 97 58.8
MELO3C019509.2 Cucumis melo HOM05D007022 ORTHO05D008868 4.5e-24 115.5 146 50.7
Sc08g0000700 Simmondsia chinensis HOM05D005091 ORTHO05D006047 4.5e-24 115.5 87 62.1
Aqoxy6G01341 Aquilegia oxysepala HOM05D007022 ORTHO05D008868 7.6e-24 114.8 128 50.8
Oeu007283.1 Olea europaea HOM05D007022 ORTHO05D008868 7.6e-24 114.8 119 51.3
Phvul.003G292600 Phaseolus vulgaris HOM05D007022 ORTHO05D008868 1.0e-23 114.4 125 55.2
Sed0002892 Sechium edule HOM05D007022 ORTHO05D008868 1.3e-23 114.0 126 49.2
TWI75G1380 Tripterygium wilfordii HOM05D007022 ORTHO05D008868 1.3e-23 114.0 68 72.1
Migut.B00344 Erythranthe guttata HOM05D007022 ORTHO05D008868 2.2e-23 113.2 125 47.2
Nn1g04883 Nelumbo nucifera HOM05D007022 ORTHO05D008868 2.2e-23 113.2 123 50.4
Prupe.8G124000 Prunus persica HOM05D007022 ORTHO05D008868 2.2e-23 113.2 68 69.1
arahy.Tifrunner.gnm1.ann1.059Z6S Arachis hypogaea HOM05D007022 ORTHO05D008868 2.9e-23 112.8 68 72.1
MBI06_g36648_MAGBIO Magnolia biondii HOM05D007022 ORTHO05D008868 2.9e-23 112.8 125 46.4
SGA_v2.0_scaffold13G06591 Striga asiatica HOM05D007022 ORTHO05D008868 2.9e-23 112.8 119 54.6
TAR381G0954 Trochodendron aralioides HOM05D007022 ORTHO05D008868 2.9e-23 112.8 78 62.8
Cc02_g18740 Coffea canephora HOM05D007022 ORTHO05D008868 3.8e-23 112.5 74 66.2
PGR042G2146 Punica granatum HOM05D007022 ORTHO05D008868 3.8e-23 112.5 143 48.3
arahy.Tifrunner.gnm1.ann1.WB2CJ6 Arachis hypogaea HOM05D007022 ORTHO05D008868 4.9e-23 112.1 68 70.6
Gohir.D13G038800 Gossypium hirsutum HOM05D007022 ORTHO05D008868 4.9e-23 112.1 132 48.5
Gorai.013G043500 Gossypium raimondii HOM05D007022 ORTHO05D008868 4.9e-23 112.1 132 48.5
Peaxi162Scf00016g01823 Petunia axillaris HOM05D007022 ORTHO05D008868 4.9e-23 112.1 130 48.5
QL11p035981 Quercus lobata HOM05D007022 ORTHO05D008868 4.9e-23 112.1 68 69.1
CiPaw.06G172800 Carya illinoinensis HOM05D007022 ORTHO05D008868 1.4e-22 110.5 135 48.9
Gohir.A13G040100 Gossypium hirsutum HOM05D007022 ORTHO05D008868 1.9e-22 110.2 132 47.7
SalBow6G3975 Salvia bowleyana HOM05D007022 ORTHO05D008868 1.9e-22 110.2 140 45.0
VMungo0251G0366 Vigna mungo HOM05D007022 ORTHO05D008868 1.9e-22 110.2 128 50.8
Ah.01g019040 Amaranthus hybridus HOM05D007022 ORTHO05D008868 3.2e-22 109.4 113 51.3
ECA240G1411 Erigeron canadensis HOM05D007022 ORTHO05D008868 3.2e-22 109.4 129 49.6
Thecc.02G100400 Theobroma cacao HOM05D007022 ORTHO05D008868 3.2e-22 109.4 133 48.9
MD10G1094200 Malus domestica HOM05D007022 ORTHO05D008868 5.5e-22 108.6 132 47.7
CANSAT25G3754 Cannabis sativa HOM05D007022 ORTHO05D008868 7.1e-22 108.2 114 54.4
unitig_26.g10239 Utricularia gibba HOM05D007022 ORTHO05D008868 9.3e-22 107.8 116 50.0
Glyma.02G132900 Glycine max HOM05D007022 ORTHO05D008868 1.2e-21 107.5 130 50.8
Lj4g0019449 Lotus japonicus HOM05D007022 ORTHO05D008868 1.6e-21 107.1 131 47.3
Oeu013707.1 Olea europaea HOM05D007022 ORTHO05D008868 1.6e-21 107.1 117 50.4
AL3G32600 Arabidopsis lyrata HOM05D007022 ORTHO05D008868 2.1e-21 106.7 125 50.4
AT3G19220 Arabidopsis thaliana HOM05D007022 ORTHO05D008868 2.1e-21 106.7 125 50.4
Glyma.07G212100 Glycine max HOM05D007022 ORTHO05D008868 2.1e-21 106.7 121 52.1
Aa31LG8G6010 Aethionema arabicum HOM05D007022 ORTHO05D008868 2.7e-21 106.3 125 52.0
Cpa.g.sc62.15 Carica papaya HOM05D007022 ORTHO05D008868 2.7e-21 106.3 68 66.2
Ca_18680_v3 Cicer arietinum L. HOM05D007022 ORTHO05D008868 2.7e-21 106.3 80 61.2
Medtr4g086255 Medicago truncatula HOM05D007022 ORTHO05D008868 3.5e-21 105.9 119 48.7
EL10Ac9g21683 Beta vulgaris HOM05D007022 ORTHO05D008868 4.6e-21 105.5 63 69.8
FAN15G0654 Fragaria x ananassa HOM05D007022 ORTHO05D008868 4.6e-21 105.5 137 44.5
FAN24G2553 Fragaria x ananassa HOM05D007022 ORTHO05D008868 6.0e-21 105.1 136 44.9
PSO541G2619 Papaver somniferum HOM05D007022 ORTHO05D008868 6.0e-21 105.1 68 69.1
PSO675G2542 Papaver somniferum HOM05D007022 ORTHO05D008868 6.0e-21 105.1 68 69.1
FvH4_2g06130 Fragaria vesca HOM05D007022 ORTHO05D008868 7.9e-21 104.8 136 44.9
RcHm_v2.0_Chr6g0257061 Rosa chinensis HOM05D007022 ORTHO05D008868 1.8e-20 103.6 111 48.6
Sp3g17290 Schrenkiella parvula HOM05D007022 ORTHO05D008868 1.8e-20 103.6 116 50.9
FAN20G2768 Fragaria x ananassa HOM05D007022 ORTHO05D008868 2.3e-20 103.2 136 44.9
Thhalv10021599m.g Eutrema salsugineum HOM05D007022 ORTHO05D008868 3.0e-20 102.8 125 48.0
TPR.G28492 Trifolium pratense HOM05D007022 ORTHO05D008868 3.0e-20 102.8 124 44.4
BolC5t33329H Brassica oleracea HOM05D007022 ORTHO05D008868 5.1e-20 102.1 119 48.7
BcaB06g25978 Brassica carinata HOM05D007022 ORTHO05D008868 8.7e-20 101.3 119 47.9
Nn5g30258 Nelumbo nucifera HOM05D007022 ORTHO05D008868 8.7e-20 101.3 119 45.4
MSTRG.27723 Avicennia marina HOM05D007022 ORTHO05D008868 1.1e-19 100.9 116 49.1
BcaC05g28522 Brassica carinata HOM05D007022 ORTHO05D008868 1.1e-19 100.9 119 47.9
COL.COLO4_32660 Corchorus olitorius HOM05D007022 ORTHO05D003154 1.1e-19 100.9 128 46.1
Psat7g125000 Pisum sativum HOM05D007022 ORTHO05D008868 1.1e-19 100.9 84 54.8
A05p30420 Brassica napus HOM05D007022 ORTHO05D008868 3.3e-19 99.4 116 48.3
Sopen10g021420 Solanum pennellii HOM05D007022 ORTHO05D008868 4.3e-19 99.0 54 81.5
BraA05t21880Z Brassica rapa HOM05D007022 ORTHO05D008868 5.7e-19 98.6 116 48.3
AUR62016784 Chenopodium quinoa HOM05D007022 ORTHO05D008868 7.4e-19 98.2 63 66.7
ATR0100G054 Amborella trichopoda HOM05D007022 ORTHO05D008868 1.3e-18 97.4 68 66.2
HPP92_016383 Vanilla planifolia HOM05D002198 ORTHO05D008868 1.3e-18 97.4 93 46.2
Carub.0003s1905 Capsella rubella HOM05D007022 ORTHO05D008868 2.2e-18 96.7 115 46.1
Sabra09G0078400 Salix brachista HOM05D007022 ORTHO05D008868 1.0e-15 87.8 114 45.6
Os09g0458400 Oryza sativa ssp. japonica HOM05D007022 ORTHO05D008868 2.2e-15 86.7 64 59.4
Zm00001eb100830 Zea mays HOM05D007022 ORTHO05D008868 3.8e-15 85.9 75 50.7
DCAR_022028 Daucus carota HOM05D007022 ORTHO05D008868 6.5e-15 85.1 118 45.8
THA.LOC104798819 Tarenaya hassleriana HOM05D007022 ORTHO05D008868 8.5e-15 84.7 48 70.8
Cfa004517 Carpinus fangiana HOM05D007022 ORTHO05D008868 1.9e-14 83.6 123 43.1
CBR_g29933 Chara braunii HOM05D007022 ORTHO05D008868 2.3e-12 76.6 65 46.2
CARHR094630 Cardamine hirsuta HOM05D007022 ORTHO05D008868 8.8e-12 74.7 104 45.2
SMO232G0067 Selaginella moellendorffii HOM05D007022 ORTHO05D008868 2.5e-11 73.2 62 51.6
AagrBONN_evm.TU.Sc2ySwM_368.1030 Anthoceros agrestis HOM05D007022 ORTHO05D008868 9.7e-11 71.2 62 48.4
ECA240G0576 Erigeron canadensis HOM05D007022 ORTHO05D008868 3.7e-10 69.3 113 40.7
Pp3c1_42880 Physcomitrium patens HOM05D007022 ORTHO05D008868 2.4e-09 66.6 68 50.0
Mapoly0186s0009 Marchantia polymorpha HOM05D007022 ORTHO05D008868 1.5e-08 63.9 59 45.8
Pp3c2_400 Physcomitrium patens HOM05D007022 ORTHO05D008868 5.9e-08 62.0 68 45.6
CDE03G0325 Ceratophyllum demersum HOM05D007022 ORTHO05D008868 8.5e-07 58.2 29 79.3
Solyc10g050250.1 Solanum lycopersicum HOM05D008050 ORTHO05D003796 1.9e-06 57.0 31 96.8


User provided reference genes

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