Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen10g021420 Solanum pennellii HOM05D007022 ORTHO05D008868 2.8e-63 245.0 111 100.0
Nitab4.5_0002543g0040 Nicotiana tabacum HOM05D007022 ORTHO05D008868 4.7e-47 191.0 101 86.1
MBI06_g36648_MAGBIO Magnolia biondii HOM05D007022 ORTHO05D008868 6.2e-47 190.7 100 83.0
PGR042G2146 Punica granatum HOM05D007022 ORTHO05D008868 8.1e-47 190.3 100 80.0
Rhsim11G0166300 Rhododendron simsii HOM05D007022 ORTHO05D008868 1.4e-46 189.5 97 84.5
GSVIVG01031751001 Vitis vinifera HOM05D007022 ORTHO05D008868 1.4e-46 189.5 99 82.8
Nn1g04883 Nelumbo nucifera HOM05D007022 ORTHO05D008868 4.0e-46 188.0 100 82.0
Cc02_g18740 Coffea canephora HOM05D007022 ORTHO05D008868 6.9e-46 187.2 99 79.8
CDE04G2473 Ceratophyllum demersum HOM05D007022 ORTHO05D008868 9.0e-46 186.8 97 84.5
Gohir.A13G040100 Gossypium hirsutum HOM05D007022 ORTHO05D008868 9.0e-46 186.8 107 79.4
Gohir.D13G038800 Gossypium hirsutum HOM05D007022 ORTHO05D008868 9.0e-46 186.8 107 79.4
Gorai.013G043500 Gossypium raimondii HOM05D007022 ORTHO05D008868 9.0e-46 186.8 107 79.4
Thecc.02G100400 Theobroma cacao HOM05D007022 ORTHO05D008868 9.0e-46 186.8 99 81.8
Ciclev10029362m.g Citrus clementina HOM05D007022 ORTHO05D008868 1.2e-45 186.4 99 81.8
TAR381G0954 Trochodendron aralioides HOM05D007022 ORTHO05D008868 1.2e-45 186.4 100 80.0
vmacro02203 Vaccinium macrocarpon HOM05D007022 ORTHO05D008868 1.2e-45 186.4 97 83.5
Manes.07G082700 Manihot esculenta HOM05D007022 ORTHO05D008868 2.0e-45 185.7 99 80.8
Nitab4.5_0007480g0010 Nicotiana tabacum HOM05D007022 ORTHO05D008868 2.6e-45 185.3 101 83.2
Cpa.g.sc62.15 Carica papaya HOM05D007022 ORTHO05D008868 9.9e-45 183.3 100 79.0
Hma1.2p1_0370F.1_g137830 Hydrangea macrophylla HOM05D007022 ORTHO05D008868 2.2e-44 182.2 99 80.8
Actinidia12953 Actinidia chinensis HOM05D007022 ORTHO05D008868 2.9e-44 181.8 97 80.4
Dinv23619 Davidia involucrata HOM05D007022 ORTHO05D008868 2.9e-44 181.8 99 79.8
unitig_26.g10239 Utricularia gibba HOM05D007022 ORTHO05D008868 2.9e-44 181.8 100 77.0
CiPaw.06G172800 Carya illinoinensis HOM05D007022 ORTHO05D008868 3.8e-44 181.4 97 81.4
THA.LOC104798819 Tarenaya hassleriana HOM05D007022 ORTHO05D008868 3.8e-44 181.4 91 85.7
Dinv42154 Davidia involucrata HOM05D007022 ORTHO05D008868 4.9e-44 181.0 94 81.9
Aqoxy6G01341 Aquilegia oxysepala HOM05D007022 ORTHO05D008868 8.4e-44 180.3 100 78.0
COL.COLO4_32660 Corchorus olitorius HOM05D007022 ORTHO05D003154 2.4e-43 178.7 100 74.0
BcaB06g25978 Brassica carinata HOM05D007022 ORTHO05D008868 3.2e-43 178.3 99 78.8
Potri.009G102400 Populus trichocarpa HOM05D007022 ORTHO05D008868 3.2e-43 178.3 99 75.8
Thhalv10021599m.g Eutrema salsugineum HOM05D007022 ORTHO05D008868 5.4e-43 177.6 97 79.4
Solyc01g108200.3 Solanum lycopersicum HOM05D007022 ORTHO05D008868 5.4e-43 177.6 99 78.8
Sopen01g050430 Solanum pennellii HOM05D007022 ORTHO05D008868 5.4e-43 177.6 99 78.8
SGA_v2.0_scaffold13G06591 Striga asiatica HOM05D007022 ORTHO05D008868 5.4e-43 177.6 99 77.8
MSTRG.27723 Avicennia marina HOM05D007022 ORTHO05D008868 7.1e-43 177.2 100 75.0
Nn5g30258 Nelumbo nucifera HOM05D007022 ORTHO05D008868 1.6e-42 176.0 100 74.0
Aa31LG8G6010 Aethionema arabicum HOM05D007022 ORTHO05D008868 2.1e-42 175.6 97 79.4
Sp3g17290 Schrenkiella parvula HOM05D007022 ORTHO05D008868 2.1e-42 175.6 97 78.4
Migut.B00344 Erythranthe guttata HOM05D007022 ORTHO05D008868 3.5e-42 174.9 100 75.0
Oeu007283.1 Olea europaea HOM05D007022 ORTHO05D008868 6.0e-42 174.1 100 74.0
QL11p035981 Quercus lobata HOM05D007022 ORTHO05D008868 7.8e-42 173.7 100 75.0
SalBow6G3975 Salvia bowleyana HOM05D007022 ORTHO05D008868 1.3e-41 172.9 102 72.5
AL3G32600 Arabidopsis lyrata HOM05D007022 ORTHO05D008868 1.7e-41 172.6 97 77.3
AT3G19220 Arabidopsis thaliana HOM05D007022 ORTHO05D008868 1.7e-41 172.6 97 77.3
BcaC05g28522 Brassica carinata HOM05D007022 ORTHO05D008868 2.3e-41 172.2 97 77.3
A05p30420 Brassica napus HOM05D007022 ORTHO05D008868 2.3e-41 172.2 97 77.3
BolC5t33329H Brassica oleracea HOM05D007022 ORTHO05D008868 2.3e-41 172.2 97 77.3
BraA05t21880Z Brassica rapa HOM05D007022 ORTHO05D008868 2.3e-41 172.2 97 77.3
Carub.0003s1905 Capsella rubella HOM05D007022 ORTHO05D008868 5.1e-41 171.0 97 76.3
HPP92_016383 Vanilla planifolia HOM05D002198 ORTHO05D008868 4.3e-40 167.9 100 70.0
VMungo0251G0366 Vigna mungo HOM05D007022 ORTHO05D008868 9.6e-40 166.8 110 68.2
Haze_10076 Corylus avellana HOM05D007022 ORTHO05D008868 1.3e-39 166.4 128 60.9
Lj4g0019449 Lotus japonicus HOM05D007022 ORTHO05D008868 2.8e-39 165.2 99 71.7
Prupe.8G124000 Prunus persica HOM05D007022 ORTHO05D008868 4.0e-38 161.4 100 72.0
Peaxi162Scf00016g01823 Petunia axillaris HOM05D007022 ORTHO05D008868 5.3e-38 161.0 99 72.7
CsaV3_3G018570 Cucumis sativus L. HOM05D007022 ORTHO05D008868 9.0e-38 160.2 100 71.0
HanXRQChr09g0251721 Helianthus annuus HOM05D007022 ORTHO05D008868 9.0e-38 160.2 100 71.0
Lsat_1_v5_gn_9_110080 Lactuca sativa HOM05D007022 ORTHO05D008868 9.0e-38 160.2 100 71.0
CSS0015269 Camellia sinensis var. sinensis HOM05D007022 ORTHO05D008868 1.2e-37 159.8 100 72.0
MELO3C019509.2 Cucumis melo HOM05D007022 ORTHO05D008868 1.5e-37 159.5 100 71.0
Sc08g0000700 Simmondsia chinensis HOM05D005091 ORTHO05D006047 2.6e-37 158.7 84 79.8
TWI75G1380 Tripterygium wilfordii HOM05D007022 ORTHO05D008868 2.6e-37 158.7 100 71.0
ECA240G1411 Erigeron canadensis HOM05D007022 ORTHO05D008868 3.4e-37 158.3 100 69.0
PSO675G2542 Papaver somniferum HOM05D007022 ORTHO05D008868 4.5e-37 157.9 100 72.0
CANSAT25G3754 Cannabis sativa HOM05D007022 ORTHO05D008868 5.8e-37 157.5 97 70.1
Phvul.003G292600 Phaseolus vulgaris HOM05D007022 ORTHO05D008868 5.8e-37 157.5 97 72.2
Sed0002892 Sechium edule HOM05D007022 ORTHO05D008868 5.8e-37 157.5 100 69.0
Atru.chr5.2709 Acer truncatum HOM05D007022 ORTHO05D008868 7.6e-37 157.1 99 68.7
arahy.Tifrunner.gnm1.ann1.059Z6S Arachis hypogaea HOM05D007022 ORTHO05D008868 2.2e-36 155.6 100 69.0
arahy.Tifrunner.gnm1.ann1.WB2CJ6 Arachis hypogaea HOM05D007022 ORTHO05D008868 2.9e-36 155.2 98 68.4
Lj9A358T46 Lonicera japonica HOM05D007022 ORTHO05D008868 2.9e-36 155.2 83 79.5
PSO541G2619 Papaver somniferum HOM05D007022 ORTHO05D008868 3.8e-36 154.8 100 71.0
PGSC0003DMG401025892 Solanum tuberosum HOM05D007022 ORTHO05D008868 3.8e-36 154.8 90 74.4
Glyma.02G132900 Glycine max HOM05D007022 ORTHO05D008868 6.4e-36 154.1 97 71.1
Glyma.07G212100 Glycine max HOM05D007022 ORTHO05D008868 6.4e-36 154.1 97 71.1
Actinidia00443 Actinidia chinensis HOM05D007022 ORTHO05D008868 1.1e-35 153.3 81 79.0
Hund00236 Selenicereus undatus HOM05D007022 ORTHO05D008868 1.1e-35 153.3 108 61.1
Ca_18680_v3 Cicer arietinum L. HOM05D007022 ORTHO05D008868 1.4e-35 152.9 99 67.7
ClCG05G010000 Citrullus lanatus HOM05D007022 ORTHO05D008868 1.9e-35 152.5 100 66.0
Zm00001eb100830 Zea mays HOM05D007022 ORTHO05D008868 2.4e-35 152.1 100 62.0
Lalb_Chr16g0384701 Lupinus albus HOM05D007022 ORTHO05D008868 4.2e-35 151.4 99 67.7
Ah.01g019040 Amaranthus hybridus HOM05D007022 ORTHO05D008868 9.3e-35 150.2 100 70.0
ATR0100G054 Amborella trichopoda HOM05D007022 ORTHO05D008868 2.1e-34 149.1 86 73.3
EL10Ac9g21683 Beta vulgaris HOM05D007022 ORTHO05D008868 2.1e-34 149.1 82 74.4
TPR.G28492 Trifolium pratense HOM05D007022 ORTHO05D008868 2.1e-34 149.1 99 65.7
CDE03G0325 Ceratophyllum demersum HOM05D007022 ORTHO05D008868 6.0e-34 147.5 72 88.9
MD10G1094200 Malus domestica HOM05D007022 ORTHO05D008868 6.0e-34 147.5 100 65.0
Psat7g125000 Pisum sativum HOM05D007022 ORTHO05D008868 7.9e-34 147.1 100 64.0
FvH4_2g06130 Fragaria vesca HOM05D007022 ORTHO05D008868 3.0e-33 145.2 100 61.0
RcHm_v2.0_Chr6g0257061 Rosa chinensis HOM05D007022 ORTHO05D008868 3.0e-33 145.2 100 62.0
Oeu013707.1 Olea europaea HOM05D007022 ORTHO05D008868 3.9e-33 144.8 81 74.1
FAN24G2553 Fragaria x ananassa HOM05D007022 ORTHO05D008868 1.1e-32 143.3 84 67.9
FAN15G0654 Fragaria x ananassa HOM05D007022 ORTHO05D008868 7.4e-32 140.6 83 67.5
Os09g0458400 Oryza sativa ssp. japonica HOM05D007022 ORTHO05D008868 1.3e-31 139.8 86 67.4
FAN20G2768 Fragaria x ananassa HOM05D007022 ORTHO05D008868 2.1e-31 139.0 83 66.3
CBR_g29933 Chara braunii HOM05D007022 ORTHO05D008868 3.1e-30 135.2 89 62.9
AUR62016784 Chenopodium quinoa HOM05D007022 ORTHO05D008868 6.9e-30 134.0 100 62.0
AagrBONN_evm.TU.Sc2ySwM_368.1030 Anthoceros agrestis HOM05D007022 ORTHO05D008868 3.2e-27 125.2 89 57.3
Medtr4g086255 Medicago truncatula HOM05D007022 ORTHO05D008868 1.2e-26 123.2 71 73.2
Pp3c1_42880 Physcomitrium patens HOM05D007022 ORTHO05D008868 1.3e-25 119.8 89 60.7
Nitab4.5_0005758g0030 Nicotiana tabacum HOM05D007022 ORTHO05D008868 3.9e-25 118.2 63 82.5
Nitab4.5_0012979g0010 Nicotiana tabacum HOM05D007022 ORTHO05D008868 3.9e-25 118.2 63 82.5
Pp3c2_400 Physcomitrium patens HOM05D007022 ORTHO05D008868 1.1e-24 116.7 89 59.6
Mapoly0186s0009 Marchantia polymorpha HOM05D007022 ORTHO05D008868 7.4e-24 114.0 89 56.2
SMO232G0067 Selaginella moellendorffii HOM05D007022 ORTHO05D008868 5.3e-22 107.8 77 57.1
Sopen10g021450 Solanum pennellii HOM05D007022 ORTHO05D008868 1.2e-18 96.7 54 81.5
SEGI_10031 Sequoiadendron giganteum HOM05D007022 ORTHO05D008868 2.8e-15 85.5 64 56.2
Rhsim11G0166200 Rhododendron simsii HOM05D007022 ORTHO05D008868 6.3e-15 84.3 66 62.1
Sabra09G0078400 Salix brachista HOM05D007022 ORTHO05D008868 1.7e-12 76.3 105 42.9
PGSC0003DMG400006210 Solanum tuberosum HOM05D007022 ORTHO05D008868 6.5e-12 74.3 40 85.0
Cre07.g339200 Chlamydomonas reinhardtii HOM05D007022 ORTHO05D008868 1.4e-09 66.6 100 35.0
Cfa004517 Carpinus fangiana HOM05D007022 ORTHO05D008868 3.9e-09 65.1 39 69.2
CARHR094630 Cardamine hirsuta HOM05D007022 ORTHO05D008868 4.3e-08 61.6 38 68.4
DCAR_022028 Daucus carota HOM05D007022 ORTHO05D008868 4.8e-07 58.2 41 61.0
ECA240G0576 Erigeron canadensis HOM05D007022 ORTHO05D008868 4.8e-07 58.2 41 61.0


User provided reference genes

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