Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen10g020870 Solanum pennellii HOM05D005641 ORTHO05D007953 4.9e-93 344.4 162 100.0
Solyc10g049650.3 Solanum lycopersicum HOM05D005641 ORTHO05D007953 9.6e-89 330.1 162 96.3
PGSC0003DMG400005454 Solanum tuberosum HOM05D005641 ORTHO05D007953 2.6e-86 322.0 162 94.4
CAN.G1.68 Capsicum annuum HOM05D005641 ORTHO05D007953 9.3e-76 287.0 162 85.8
Nitab4.5_0012285g0030 Nicotiana tabacum HOM05D005641 ORTHO05D007953 6.0e-75 284.3 162 82.7
Dinv42223 Davidia involucrata HOM05D005641 ORTHO05D007953 1.9e-65 252.7 157 73.9
Peaxi162Scf00083g00163 Petunia axillaris HOM05D005641 ORTHO05D007953 2.5e-65 252.3 154 75.3
Nitab4.5_0001259g0120 Nicotiana tabacum HOM05D005641 ORTHO05D007953 1.1e-63 246.9 137 85.4
Lsat_1_v5_gn_9_112460 Lactuca sativa HOM05D005641 ORTHO05D007953 2.0e-62 242.7 152 69.1
HanXRQChr03g0069981 Helianthus annuus HOM05D005641 ORTHO05D007953 3.2e-60 235.3 150 68.0
Thecc.02G114700 Theobroma cacao HOM05D005641 ORTHO05D007953 2.1e-59 232.6 150 70.7
CiPaw.06G166900 Carya illinoinensis HOM05D005641 ORTHO05D007953 3.0e-58 228.8 151 69.5
MSTRG.5328 Avicennia marina HOM05D005641 ORTHO05D007953 1.9e-57 226.1 158 66.5
COL.COLO4_32537 Corchorus olitorius HOM05D005641 ORTHO05D007953 5.7e-57 224.6 155 65.2
Cc02_g19690 Coffea canephora HOM05D005641 ORTHO05D007953 7.4e-57 224.2 141 71.6
ECA240G0483 Erigeron canadensis HOM05D005641 ORTHO05D007953 7.4e-57 224.2 152 67.1
Hma1.2p1_1023F.1_g248880 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 9.6e-57 223.8 141 74.5
QL02p069388 Quercus lobata HOM05D005641 ORTHO05D007953 1.3e-56 223.4 146 70.5
RcHm_v2.0_Chr6g0253411 Rosa chinensis HOM05D005641 ORTHO05D007953 1.6e-56 223.0 149 69.1
Nn1g04606 Nelumbo nucifera HOM05D005641 ORTHO05D007953 3.7e-56 221.9 134 70.9
Oeu037265.1 Olea europaea HOM05D005641 ORTHO05D007953 3.7e-56 221.9 139 74.8
Atru.chr5.2402 Acer truncatum HOM05D005641 ORTHO05D007953 6.3e-56 221.1 157 64.3
Eucgr.G01263 Eucalyptus grandis HOM05D005641 ORTHO05D007953 8.2e-56 220.7 147 68.0
Duzib052G0024 Durio zibethinus HOM05D005641 ORTHO05D007953 1.1e-55 220.3 158 65.8
Migut.O00678 Erythranthe guttata HOM05D005641 ORTHO05D007953 1.8e-55 219.5 140 70.0
PGR042G1829 Punica granatum HOM05D005641 ORTHO05D007953 1.8e-55 219.5 150 68.0
Manes.10G080400 Manihot esculenta HOM05D005641 ORTHO05D007953 2.4e-55 219.2 145 71.0
SGA_v2.0_scaffold337G49200 Striga asiatica HOM05D005641 ORTHO05D007953 3.1e-55 218.8 141 73.0
vmacro19527 Vaccinium macrocarpon HOM05D005641 ORTHO05D007953 3.1e-55 218.8 148 71.6
Potri.009G090100 Populus trichocarpa HOM05D005641 ORTHO05D007953 4.1e-55 218.4 155 66.5
Gorai.005G232800 Gossypium raimondii HOM05D005641 ORTHO05D007953 5.3e-55 218.0 148 68.9
Gohir.D02G205400 Gossypium hirsutum HOM05D005641 ORTHO05D007953 6.9e-55 217.6 153 66.0
Sabra09G0069700 Salix brachista HOM05D005641 ORTHO05D007953 6.9e-55 217.6 142 70.4
FvH4_2g04060 Fragaria vesca HOM05D005641 ORTHO05D007953 9.0e-55 217.2 144 70.1
EL10Ac8g19366 Beta vulgaris HOM05D005641 ORTHO05D007953 1.2e-54 216.9 152 63.8
Haze_10242 Corylus avellana HOM05D005641 ORTHO05D007953 1.2e-54 216.9 125 76.0
FAN15G3008 Fragaria x ananassa HOM05D005641 ORTHO05D007953 1.2e-54 216.9 144 70.1
DCAR_029115 Daucus carota HOM05D005641 ORTHO05D007953 2.0e-54 216.1 136 72.1
Migut.N01150 Erythranthe guttata HOM05D005641 ORTHO05D007953 2.0e-54 216.1 140 68.6
Sc14g0002550 Simmondsia chinensis HOM05D005641 ORTHO05D007953 2.6e-54 215.7 155 64.5
FAN24G2036 Fragaria x ananassa HOM05D005641 ORTHO05D007953 4.5e-54 214.9 142 70.4
Gohir.A03G183900 Gossypium hirsutum HOM05D005641 ORTHO05D007953 4.5e-54 214.9 148 66.9
TPR.G8292 Trifolium pratense HOM05D005641 ORTHO05D007953 7.6e-54 214.2 137 70.8
AUR62031337 Chenopodium quinoa HOM05D005641 ORTHO05D007953 1.0e-53 213.8 153 62.7
MD05G1097100 Malus domestica HOM05D005641 ORTHO05D007953 1.0e-53 213.8 143 69.2
GSVIVG01037858001 Vitis vinifera HOM05D005641 ORTHO05D007953 1.0e-53 213.8 158 65.2
FAN20G2714 Fragaria x ananassa HOM05D005641 ORTHO05D007953 1.3e-53 213.4 143 69.2
TAR376G1148 Trochodendron aralioides HOM05D005641 ORTHO05D007953 1.3e-53 213.4 121 77.7
CANSAT25G1977 Cannabis sativa HOM05D005641 ORTHO05D007953 1.7e-53 213.0 128 77.3
CSS0033790 Camellia sinensis var. sinensis HOM05D005641 ORTHO05D007953 3.8e-53 211.8 148 66.9
Cfa004645 Carpinus fangiana HOM05D005641 ORTHO05D007953 3.8e-53 211.8 121 77.7
Lj1g0011960 Lotus japonicus HOM05D005641 ORTHO05D007953 3.8e-53 211.8 140 71.4
Ah.09g231980 Amaranthus hybridus HOM05D005641 ORTHO05D007953 6.5e-53 211.1 152 64.5
AUR62022504 Chenopodium quinoa HOM05D005641 ORTHO05D007953 6.5e-53 211.1 153 61.4
Prupe.8G141700 Prunus persica HOM05D005641 ORTHO05D007953 6.5e-53 211.1 144 68.1
Rhsim05G0090100 Rhododendron simsii HOM05D005641 ORTHO05D007953 8.4e-53 210.7 148 68.9
Eucgr.G01266 Eucalyptus grandis HOM05D005641 ORTHO05D007953 1.4e-52 209.9 147 64.6
Ciclev10029502m.g Citrus clementina HOM05D005641 ORTHO05D007953 1.9e-52 209.5 146 66.4
Medtr5g005150 Medicago truncatula HOM05D005641 ORTHO05D007953 1.9e-52 209.5 137 68.6
Sed0000346 Sechium edule HOM05D005641 ORTHO05D007953 2.5e-52 209.1 138 71.7
CSS0039741 Camellia sinensis var. sinensis HOM05D005641 ORTHO05D007953 5.5e-52 208.0 148 65.5
TWI14G0306 Tripterygium wilfordii HOM05D005641 ORTHO05D007953 1.2e-51 206.8 146 65.8
Aqoxy6G02714 Aquilegia oxysepala HOM05D005641 ORTHO05D007953 1.6e-51 206.5 133 66.9
Hund12610 Selenicereus undatus HOM05D005641 ORTHO05D007953 1.6e-51 206.5 144 65.3
Carub.0003s2882 Capsella rubella HOM05D005641 ORTHO05D007953 2.1e-51 206.1 138 71.0
Phvul.002G052300 Phaseolus vulgaris HOM05D005641 ORTHO05D007953 4.6e-51 204.9 140 67.9
PSO675G2895 Papaver somniferum HOM05D005641 ORTHO05D007953 6.1e-51 204.5 156 64.7
CARHR284800 Cardamine hirsuta HOM05D005641 ORTHO05D007953 1.0e-50 203.8 140 66.4
AT2G14825 Arabidopsis thaliana HOM05D005641 ORTHO05D007953 1.3e-50 203.4 142 68.3
Cpa.g.sc106.73 Carica papaya HOM05D005641 ORTHO05D007953 1.8e-50 203.0 150 64.7
PSO541G1794 Papaver somniferum HOM05D005641 ORTHO05D007953 1.8e-50 203.0 140 68.6
CsaV3_4G000430 Cucumis sativus L. HOM05D005641 ORTHO05D007953 3.0e-50 202.2 141 66.7
FAN27G3103 Fragaria x ananassa HOM05D005641 ORTHO05D007953 3.0e-50 202.2 143 67.1
Sp3g28020 Schrenkiella parvula HOM05D005641 ORTHO05D007953 3.9e-50 201.8 137 65.7
MELO3C017992.2 Cucumis melo HOM05D005641 ORTHO05D007953 8.7e-50 200.7 144 65.3
Thhalv10022899m.g Eutrema salsugineum HOM05D005641 ORTHO05D007953 8.7e-50 200.7 136 66.9
AL3G46570 Arabidopsis lyrata HOM05D005641 ORTHO05D007953 1.1e-49 200.3 139 69.1
BcaC04g23064 Brassica carinata HOM05D005641 ORTHO05D007953 2.5e-49 199.1 138 68.8
BolC9t54144H Brassica oleracea HOM05D005641 ORTHO05D007953 2.5e-49 199.1 138 68.8
BraA09t36698Z Brassica rapa HOM05D005641 ORTHO05D007953 3.3e-49 198.7 138 68.8
C09p12490 Brassica napus HOM05D005641 ORTHO05D007953 9.7e-49 197.2 138 68.1
A09p10560 Brassica napus HOM05D005641 ORTHO05D007953 2.2e-48 196.1 138 68.8
Aa31LG8G12890 Aethionema arabicum HOM05D005641 ORTHO05D007953 2.8e-48 195.7 135 66.7
PGR042G3728 Punica granatum HOM05D005641 ORTHO05D007953 3.7e-48 195.3 135 66.7
arahy.Tifrunner.gnm1.ann1.GRNJ5W Arachis hypogaea HOM05D005641 ORTHO05D007953 8.2e-48 194.1 118 74.6
CDE06G0500 Ceratophyllum demersum HOM05D005641 ORTHO05D007953 8.2e-48 194.1 157 55.4
THA.LOC104819534 Tarenaya hassleriana HOM05D005641 ORTHO05D007953 1.2e-46 190.3 128 65.6
Actinidia27984 Actinidia chinensis HOM05D005641 ORTHO05D007953 2.0e-46 189.5 142 65.5
Hma1.2p1_1023F.1_g248890 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 2.0e-46 189.5 160 62.5
Glyma.01G243000 Glycine max HOM05D005641 ORTHO05D007953 3.4e-46 188.7 138 67.4
unitig_744.g24456 Utricularia gibba HOM05D005641 ORTHO05D007953 4.5e-46 188.3 143 64.3
VMungo1215G0158 Vigna mungo HOM05D005641 ORTHO05D007953 5.9e-46 188.0 171 54.4
SEGI_20221 Sequoiadendron giganteum HOM05D005641 ORTHO05D007953 7.7e-46 187.6 119 69.7
SEGI_25796 Sequoiadendron giganteum HOM05D005641 ORTHO05D007953 7.7e-46 187.6 119 69.7
Ciclev10028542m.g Citrus clementina HOM05D005641 ORTHO05D007953 2.9e-45 185.7 133 65.4
HPP92_020459 Vanilla planifolia HOM05D005641 ORTHO05D007953 2.9e-45 185.7 133 63.9
HPP92_026175 Vanilla planifolia HOM05D005641 ORTHO05D007953 4.2e-44 181.8 133 63.2
Peaxi162Scf00003g02633 Petunia axillaris HOM05D005641 ORTHO05D007953 1.2e-43 180.3 158 60.8
QL02p069415 Quercus lobata HOM05D000030 ORTHO05D000009 1.4e-42 176.8 110 70.0
Zm00001eb137960 Zea mays HOM05D005641 ORTHO05D007953 3.0e-42 175.6 126 58.7
Os12g0508266 Oryza sativa ssp. japonica HOM05D005641 ORTHO05D007953 2.0e-41 172.9 138 53.6
SalBow3G4250 Salvia bowleyana HOM05D005641 ORTHO05D007953 3.2e-36 155.6 99 68.7
Ca_24352_v3 Cicer arietinum L. HOM05D005641 ORTHO05D007953 3.9e-34 148.7 95 70.5
arahy.Tifrunner.gnm1.ann1.C5GEYC Arachis hypogaea HOM05D005641 ORTHO05D007953 8.2e-32 141.0 118 60.2
Pp3c6_20250 Physcomitrium patens HOM05D005641 ORTHO05D007953 2.6e-30 136.0 136 50.0
RcHm_v2.0_Chr6g0253251 Rosa chinensis HOM05D005641 ORTHO05D007953 3.2e-28 129.0 97 55.7
SMO119G0506 Selaginella moellendorffii HOM05D005641 ORTHO05D007953 9.4e-28 127.5 117 50.4
FvH4_2g04050 Fragaria vesca HOM05D005641 ORTHO05D035713 3.0e-26 122.5 92 60.9
Hma1.2p1_1023F.1_g248900 Hydrangea macrophylla HOM05D005641 ORTHO05D007953 8.8e-26 120.9 75 72.0
Lj9A326T79 Lonicera japonica HOM05D005641 ORTHO05D007953 1.5e-25 120.2 74 70.3
RcHm_v2.0_Chr6g0253401 Rosa chinensis HOM05D005641 ORTHO05D035713 2.6e-25 119.4 92 58.7
CBR_g32245 Chara braunii HOM05D005641 ORTHO05D007953 1.4e-23 113.6 114 43.0
ClCG10G010510 Citrullus lanatus HOM05D005641 ORTHO05D007953 5.3e-23 111.7 120 49.2
Prupe.8G141500 Prunus persica HOM05D005641 ORTHO05D007953 2.0e-22 109.8 89 53.9
Psat4g227920 Pisum sativum HOM05D005641 ORTHO05D007953 3.5e-22 109.0 137 44.5
RcHm_v2.0_Chr6g0253291 Rosa chinensis HOM05D005641 ORTHO05D007953 2.2e-21 106.3 93 47.3
Lj9A326T80 Lonicera japonica HOM05D005641 ORTHO05D007953 1.5e-20 103.6 73 60.3
RcHm_v2.0_Chr6g0253371 Rosa chinensis HOM05D001615 ORTHO05D001493 1.0e-18 97.4 99 49.5
Nitab4.5_0007768g0030 Nicotiana tabacum HOM05D005641 ORTHO05D007953 5.2e-18 95.1 63 74.6
RcHm_v2.0_Chr6g0253261 Rosa chinensis HOM05D005641 ORTHO05D007953 6.8e-18 94.7 92 47.8
RcHm_v2.0_Chr6g0253341 Rosa chinensis HOM05D005641 ORTHO05D007953 3.7e-16 89.0 99 40.4
Nitab4.5_0013410g0010 Nicotiana tabacum HOM05D005641 ORTHO05D007953 3.1e-15 85.9 63 69.8
RcHm_v2.0_Chr6g0253281 Rosa chinensis HOM05D005641 ORTHO05D007953 1.7e-13 80.1 67 55.2
Lalb_Chr16g0376281 Lupinus albus HOM05D005641 ORTHO05D007953 2.6e-09 66.2 54 57.4
FAN24G2128 Fragaria x ananassa HOM05D005641 ORTHO05D208318 5.7e-09 65.1 70 44.3
ATR0019G033 Amborella trichopoda HOM05D005641 ORTHO05D007953 4.9e-08 62.0 54 57.4
FAN15G1393 Fragaria x ananassa HOM05D005641 ORTHO05D035713 6.3e-08 61.6 88 43.2
Zm00001eb264710 Zea mays HOM05D005641 ORTHO05D007953 7.0e-07 58.2 39 64.1


User provided reference genes

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