Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen10g019740 Solanum pennellii HOM05D006562 ORTHO05D008230 9.8e-36 152.9 76 100.0
PGSC0003DMG400003647 Solanum tuberosum HOM05D006562 ORTHO05D008230 6.2e-30 133.7 68 95.6
Solyc02g083600.4 Solanum lycopersicum HOM05D006562 ORTHO05D008230 8.9e-29 129.8 68 94.1
Sopen02g028380 Solanum pennellii HOM05D006562 ORTHO05D008230 1.7e-27 125.6 68 92.6
Nitab4.5_0001892g0110 Nicotiana tabacum HOM05D006562 ORTHO05D008230 3.9e-24 114.4 68 79.4
Nitab4.5_0003187g0030 Nicotiana tabacum HOM05D006562 ORTHO05D008230 6.6e-24 113.6 68 79.4
CAN.G1274.29 Capsicum annuum HOM05D006562 ORTHO05D008230 4.3e-23 110.9 68 79.4
Peaxi162Scf00328g00616 Petunia axillaris HOM05D006562 ORTHO05D008230 5.6e-23 110.5 68 79.4
Dinv33663 Davidia involucrata HOM05D006562 ORTHO05D008230 5.8e-20 100.5 67 73.1
Lj2A480G48 Lonicera japonica HOM05D006562 ORTHO05D008230 4.9e-19 97.4 68 69.1
CSS0025685 Camellia sinensis var. sinensis HOM05D006562 ORTHO05D008230 8.3e-19 96.7 68 67.6
Actinidia22955 Actinidia chinensis HOM05D006562 ORTHO05D008230 1.9e-18 95.5 68 67.6
Cc07_g11050 Coffea canephora HOM05D006562 ORTHO05D008230 1.9e-18 95.5 68 63.2
CiPaw.07G060900 Carya illinoinensis HOM05D006562 ORTHO05D008230 2.4e-18 95.1 69 66.7
GSVIVG01018736001 Vitis vinifera HOM05D006562 ORTHO05D008230 7.1e-18 93.6 68 64.7
Cfa007000 Carpinus fangiana HOM05D006562 ORTHO05D008230 1.2e-17 92.8 68 67.6
TAR376G1060 Trochodendron aralioides HOM05D006562 ORTHO05D008230 1.2e-17 92.8 68 69.1
DCAR_014038 Daucus carota HOM05D006562 ORTHO05D008230 1.6e-17 92.4 68 69.1
Lj4g0007150 Lotus japonicus HOM05D006562 ORTHO05D008230 2.1e-17 92.0 68 64.7
RcHm_v2.0_Chr2g0099051 Rosa chinensis HOM05D006562 ORTHO05D008230 3.5e-17 91.3 63 69.8
FvH4_1g11470 Fragaria vesca HOM05D006562 ORTHO05D008230 4.6e-17 90.9 63 69.8
FAN19G2077 Fragaria x ananassa HOM05D006562 ORTHO05D008230 4.6e-17 90.9 63 69.8
HanXRQChr15g0483891 Helianthus annuus HOM05D006562 ORTHO05D008230 4.6e-17 90.9 68 61.8
Lalb_Chr16g0391391 Lupinus albus HOM05D006562 ORTHO05D008230 4.6e-17 90.9 68 64.7
Haze_03732 Corylus avellana HOM05D006562 ORTHO05D008230 6.0e-17 90.5 66 66.7
vmacro22151 Vaccinium macrocarpon HOM05D006562 ORTHO05D008230 6.0e-17 90.5 68 66.2
vmacro22192 Vaccinium macrocarpon HOM05D006562 ORTHO05D008230 6.0e-17 90.5 68 66.2
FAN23G1005 Fragaria x ananassa HOM05D006562 ORTHO05D008230 1.0e-16 89.7 63 68.3
Oeu048479.1 Olea europaea HOM05D006562 ORTHO05D008230 1.0e-16 89.7 61 73.8
Aqoxy5G01815 Aquilegia oxysepala HOM05D006562 ORTHO05D008230 1.3e-16 89.4 68 60.3
Potri.005G111000 Populus trichocarpa HOM05D006562 ORTHO05D008230 1.3e-16 89.4 68 64.7
Duzib187G1447 Durio zibethinus HOM05D006562 ORTHO05D008230 1.7e-16 89.0 68 67.6
Sabra05G0091000 Salix brachista HOM05D006562 ORTHO05D008230 1.7e-16 89.0 61 68.9
EL10Ac6g15524 Beta vulgaris HOM05D006562 ORTHO05D008230 2.3e-16 88.6 68 60.3
Medtr8g075250 Medicago truncatula HOM05D006562 ORTHO05D008230 3.0e-16 88.2 68 63.2
Hund16502 Selenicereus undatus HOM05D006562 ORTHO05D008230 3.0e-16 88.2 69 59.4
Sc16g0001970 Simmondsia chinensis HOM05D006562 ORTHO05D008230 3.0e-16 88.2 69 60.9
Ca_03628_v3 Cicer arietinum L. HOM05D006562 ORTHO05D008230 3.9e-16 87.8 68 64.7
TPR.G19508 Trifolium pratense HOM05D006562 ORTHO05D008230 3.9e-16 87.8 68 63.2
Phvul.003G265000 Phaseolus vulgaris HOM05D006562 ORTHO05D008230 5.1e-16 87.4 68 61.8
AUR62029498 Chenopodium quinoa HOM05D006562 ORTHO05D008230 6.6e-16 87.0 66 60.6
FAN28G2818 Fragaria x ananassa HOM05D006562 ORTHO05D008230 6.6e-16 87.0 63 68.3
Manes.01G148500 Manihot esculenta HOM05D006562 ORTHO05D008230 6.6e-16 87.0 68 63.2
QL06p051072 Quercus lobata HOM05D006562 ORTHO05D008230 6.6e-16 87.0 68 66.2
Atru.chr3.853 Acer truncatum HOM05D006562 ORTHO05D008230 8.6e-16 86.7 66 65.2
Cpa.g.sc6.285 Carica papaya HOM05D006562 ORTHO05D008230 8.6e-16 86.7 65 67.7
Psat4g101960 Pisum sativum HOM05D006562 ORTHO05D008230 8.6e-16 86.7 68 63.2
TWI53G1373 Tripterygium wilfordii HOM05D006562 ORTHO05D008230 1.1e-15 86.3 68 61.8
CANSAT25G3480 Cannabis sativa HOM05D006562 ORTHO05D008230 1.5e-15 85.9 68 64.7
AUR62003339 Chenopodium quinoa HOM05D006562 ORTHO05D008230 1.5e-15 85.9 66 59.1
Gohir.A10G098700 Gossypium hirsutum HOM05D006562 ORTHO05D008230 1.5e-15 85.9 69 63.8
Gorai.011G098200 Gossypium raimondii HOM05D006562 ORTHO05D008230 1.5e-15 85.9 69 63.8
Gohir.D10G089300 Gossypium hirsutum HOM05D006562 ORTHO05D008230 1.9e-15 85.5 69 62.3
Dinv33664 Davidia involucrata HOM05D006562 ORTHO05D008230 2.5e-15 85.1 61 70.5
Glyma.16G124500 Glycine max HOM05D006562 ORTHO05D008230 2.5e-15 85.1 68 58.8
arahy.Tifrunner.gnm1.ann1.6MN492 Arachis hypogaea HOM05D006562 ORTHO05D008230 5.6e-15 84.0 61 67.2
arahy.Tifrunner.gnm1.ann1.X2JQ1G Arachis hypogaea HOM05D006562 ORTHO05D008230 5.6e-15 84.0 61 67.2
Thecc.01G014800 Theobroma cacao HOM05D006562 ORTHO05D008230 7.3e-15 83.6 69 63.8
VMungo0251G0646 Vigna mungo HOM05D006562 ORTHO05D008230 7.3e-15 83.6 68 60.3
SGA_v2.0_scaffold229G43296 Striga asiatica HOM05D006562 ORTHO05D008230 9.5e-15 83.2 67 61.2
Lsat_1_v5_gn_3_72080 Lactuca sativa HOM05D006562 ORTHO05D008230 1.2e-14 82.8 68 58.8
MD15G1242700 Malus domestica HOM05D006562 ORTHO05D008230 1.6e-14 82.4 57 66.7
COL.COLO4_22460 Corchorus olitorius HOM05D006562 ORTHO05D008230 2.1e-14 82.0 69 62.3
MBI05_g23389_MAGBIO Magnolia biondii HOM05D006562 ORTHO05D008230 2.8e-14 81.6 68 61.8
SalBow5G1234 Salvia bowleyana HOM05D006562 ORTHO05D008230 2.8e-14 81.6 66 62.1
PSO700G0294 Papaver somniferum HOM05D006562 ORTHO05D008230 3.6e-14 81.3 64 62.5
Lsat_1_v5_gn_5_17820 Lactuca sativa HOM05D002511 ORTHO05D019442 6.2e-14 80.5 68 54.4
PSO170G3776 Papaver somniferum HOM05D006562 ORTHO05D008230 8.1e-14 80.1 57 68.4
Aa31LG1G14620 Aethionema arabicum HOM05D006562 ORTHO05D008230 1.4e-13 79.3 58 67.2
Migut.L00910 Erythranthe guttata HOM05D006562 ORTHO05D008230 1.8e-13 79.0 67 58.2
Ah.03g149120 Amaranthus hybridus HOM05D006562 ORTHO05D008230 2.4e-13 78.6 66 56.1
ATR0712G114 Amborella trichopoda HOM05D006562 ORTHO05D008230 2.4e-13 78.6 75 53.3
CARHR281620 Cardamine hirsuta HOM05D006562 ORTHO05D008230 4.0e-13 77.8 68 60.3
SHI08537 Sapria himalayana HOM05D006562 ORTHO05D008230 4.0e-13 77.8 68 58.8
unitig_37.g12438 Utricularia gibba HOM05D006562 ORTHO05D008230 5.2e-13 77.4 63 63.5
MSTRG.15581 Avicennia marina HOM05D006562 ORTHO05D008230 8.9e-13 76.6 66 60.6
PGR119G1624 Punica granatum HOM05D006562 ORTHO05D008230 8.9e-13 76.6 66 57.6
ClCG01G020460 Citrullus lanatus HOM05D006562 ORTHO05D008230 1.2e-12 76.3 69 55.1
Eucgr.I02333 Eucalyptus grandis HOM05D006562 ORTHO05D008230 1.2e-12 76.3 66 59.1
BcaB04g20123 Brassica carinata HOM05D006562 ORTHO05D008230 1.5e-12 75.9 73 56.2
Carub.0008s2836 Capsella rubella HOM05D006562 ORTHO05D008230 2.6e-12 75.1 68 57.4
CsaV3_6G047340 Cucumis sativus L. HOM05D006562 ORTHO05D008230 2.6e-12 75.1 59 61.0
Sed0025600 Sechium edule HOM05D006562 ORTHO05D008230 3.4e-12 74.7 69 53.6
AL8G45460 Arabidopsis lyrata HOM05D006562 ORTHO05D008230 4.4e-12 74.3 58 65.5
BcaC04g23114 Brassica carinata HOM05D006562 ORTHO05D008230 4.4e-12 74.3 68 57.4
A09p10140 Brassica napus HOM05D006562 ORTHO05D008230 4.4e-12 74.3 68 57.4
BolC9t54092H Brassica oleracea HOM05D006562 ORTHO05D008230 4.4e-12 74.3 68 57.4
MELO3C007925.2 Cucumis melo HOM05D006562 ORTHO05D008230 4.4e-12 74.3 69 52.2
AT5G66130 Arabidopsis thaliana HOM05D006562 ORTHO05D008230 5.8e-12 73.9 58 65.5
C09p12020 Brassica napus HOM05D006562 ORTHO05D008230 7.6e-12 73.6 68 55.9
Rhsim10G0209300 Rhododendron simsii HOM05D006562 ORTHO05D008230 7.6e-12 73.6 58 62.1
BraA09t36658Z Brassica rapa HOM05D006562 ORTHO05D008230 1.3e-11 72.8 68 55.9
Thhalv10003881m.g Eutrema salsugineum HOM05D006562 ORTHO05D008230 2.9e-11 71.6 68 54.4
Sp2g30560 Schrenkiella parvula HOM05D006562 ORTHO05D008230 2.9e-11 71.6 57 64.9
HPP92_022170 Vanilla planifolia HOM05D006562 ORTHO05D008230 6.4e-11 70.5 67 53.7
HPP92_022171 Vanilla planifolia HOM05D006562 ORTHO05D008230 6.4e-11 70.5 67 53.7
Ciclev10025220m.g Citrus clementina HOM05D006562 ORTHO05D008230 1.1e-10 69.7 68 52.9
Os03g0242100 Oryza sativa ssp. japonica HOM05D006562 ORTHO05D008230 7.1e-10 67.0 57 59.6
Zm00001eb398900 Zea mays HOM05D006562 ORTHO05D008230 2.1e-09 65.5 57 54.4
ECA246G3730 Erigeron canadensis HOM05D006562 ORTHO05D008230 4.6e-09 64.3 70 52.9
Pp3c8_14180 Physcomitrium patens HOM05D006562 ORTHO05D008230 1.7e-08 62.4 70 47.1
SMO329G0081 Selaginella moellendorffii HOM05D006562 ORTHO05D008230 8.7e-08 60.1 63 42.9
Prupe.7G171500 Prunus persica HOM05D006562 ORTHO05D008230 1.1e-07 59.7 48 58.3


User provided reference genes

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