Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen10g019310 Solanum pennellii HOM05D003426 ORTHO05D003816 1.4e-159 566.2 280 100.0
Solyc10g048140.2 Solanum lycopersicum HOM05D003426 ORTHO05D003816 2.7e-147 525.4 280 92.9
PGSC0003DMG400040189 Solanum tuberosum HOM05D003426 ORTHO05D003816 1.4e-108 396.7 237 83.5
PGSC0003DMG400040160 Solanum tuberosum HOM05D003426 ORTHO05D003816 3.1e-79 299.3 216 69.9
PGSC0003DMG400043134 Solanum tuberosum HOM05D003426 ORTHO05D003816 1.7e-77 293.5 204 73.0
PGSC0003DMG400044972 Solanum tuberosum HOM05D003426 ORTHO05D003816 1.2e-67 260.8 215 66.5
PGSC0003DMG400034786 Solanum tuberosum HOM05D003426 ORTHO05D003816 2.2e-64 250.0 230 61.3
PGSC0003DMG400037110 Solanum tuberosum HOM05D003426 ORTHO05D003816 3.6e-59 232.6 174 67.8
PGSC0003DMG400036381 Solanum tuberosum HOM05D003426 ORTHO05D003816 3.5e-54 216.1 253 51.8
Sopen10g015150 Solanum pennellii HOM05D003426 ORTHO05D003816 4.9e-48 195.7 213 51.2
PGSC0003DMG400038550 Solanum tuberosum HOM05D003426 ORTHO05D003816 6.6e-45 185.3 138 69.6
Nitab4.5_0000123g0610 Nicotiana tabacum HOM05D003426 ORTHO05D007302 5.2e-42 175.6 191 51.3
PGSC0003DMG400011187 Solanum tuberosum HOM05D003426 ORTHO05D003816 1.6e-38 164.1 275 38.9
PGSC0003DMG400042655 Solanum tuberosum HOM05D003426 ORTHO05D003816 4.6e-38 162.5 108 74.1
Solyc07g005700.3 Solanum lycopersicum HOM05D003426 ORTHO05D003816 3.3e-36 156.4 246 40.2
Sopen07g001810 Solanum pennellii HOM05D003426 ORTHO05D003816 3.6e-35 152.9 246 39.8
Nitab4.5_0002290g0120 Nicotiana tabacum HOM05D003426 ORTHO05D003816 1.1e-34 151.4 188 47.3
Nitab4.5_0001571g0080 Nicotiana tabacum HOM05D003426 ORTHO05D003816 3.1e-34 149.8 268 39.6
PGSC0003DMG400041455 Solanum tuberosum HOM05D003426 ORTHO05D003816 5.8e-33 145.6 240 39.2
CAN.G160.49 Capsicum annuum HOM05D003426 ORTHO05D003816 7.5e-33 145.2 243 40.7
Peaxi162Scf00401g00417 Petunia axillaris HOM05D003426 ORTHO05D003816 1.1e-31 141.4 263 35.7
PGSC0003DMG400045270 Solanum tuberosum HOM05D003426 ORTHO05D003816 2.1e-30 137.1 122 59.0
Nitab4.5_0005869g0080 Nicotiana tabacum HOM05D003426 ORTHO05D003816 1.1e-28 131.3 231 39.4
Actinidia23556 Actinidia chinensis HOM05D003426 ORTHO05D003816 4.9e-24 115.9 227 33.9
Dinv42844 Davidia involucrata HOM05D003426 ORTHO05D003816 6.4e-24 115.5 240 35.0
Dinv43256 Davidia involucrata HOM05D003426 ORTHO05D003816 6.4e-24 115.5 240 35.0
Cc06_g14810 Coffea canephora HOM05D003426 ORTHO05D003816 8.4e-24 115.2 184 37.5
Potri.006G182601 Populus trichocarpa HOM05D003426 ORTHO05D003816 8.4e-24 115.2 257 33.1
vmacro16795 Vaccinium macrocarpon HOM05D003426 ORTHO05D003816 2.4e-23 113.6 272 34.2
Hma1.2p1_2680F.1_g326790 Hydrangea macrophylla HOM05D003426 ORTHO05D003816 1.2e-22 111.3 235 35.3
Oeu021305.2 Olea europaea HOM05D003426 ORTHO05D003816 2.1e-22 110.5 196 36.7
MSTRG.6152 Avicennia marina HOM05D003426 ORTHO05D003816 7.8e-22 108.6 218 35.3
Solyc10g048110.1 Solanum lycopersicum HOM05D003426 ORTHO05D003816 5.1e-21 105.9 91 63.7
Lj9C718T11 Lonicera japonica HOM05D003426 ORTHO05D003816 6.6e-21 105.5 190 33.7
MSTRG.26266 Avicennia marina HOM05D003426 ORTHO05D003816 8.6e-21 105.1 245 33.5
Rhsim01G0028100 Rhododendron simsii HOM05D003426 ORTHO05D003816 8.6e-21 105.1 185 34.1
HanXRQChr05g0144001 Helianthus annuus HOM05D003426 ORTHO05D003816 3.3e-20 103.2 198 34.3
Sabra06G0139100 Salix brachista HOM05D003426 ORTHO05D003816 5.6e-20 102.4 252 30.6
Hma1.2p1_0028F.1_g017630 Hydrangea macrophylla HOM05D003426 ORTHO05D003816 1.6e-19 100.9 188 36.7
Oeu026460.1 Olea europaea HOM05D003426 ORTHO05D003816 2.1e-19 100.5 235 32.8
Sopen10g006430 Solanum pennellii HOM05D003426 ORTHO05D003816 2.8e-19 100.1 92 62.0
Duzib168G0934 Durio zibethinus HOM05D003426 ORTHO05D003816 3.6e-19 99.8 197 34.5
ECA236G2514 Erigeron canadensis HOM05D003426 ORTHO05D003816 3.6e-19 99.8 184 32.6
Glyma.17G072900 Glycine max HOM05D003426 ORTHO05D003816 3.6e-19 99.8 181 37.0
Manes.06G035400 Manihot esculenta HOM05D003426 ORTHO05D003816 4.7e-19 99.4 246 29.7
Lsat_1_v5_gn_8_63641 Lactuca sativa HOM05D003426 ORTHO05D003816 6.2e-19 99.0 192 33.9
Gohir.D07G031500 Gossypium hirsutum HOM05D003426 ORTHO05D003816 1.8e-18 97.4 215 34.4
Haze_19169 Corylus avellana HOM05D003426 ORTHO05D003816 2.4e-18 97.1 203 32.0
Cfa020810 Carpinus fangiana HOM05D003426 ORTHO05D003816 3.1e-18 96.7 229 31.4
Nitab4.5_0011705g0030 Nicotiana tabacum HOM05D003426 ORTHO05D003816 5.2e-18 95.9 101 53.5
Glyma.17G184200 Glycine max HOM05D003426 ORTHO05D003816 6.8e-18 95.5 188 36.7
CSS0024837 Camellia sinensis var. sinensis HOM05D003426 ORTHO05D003816 8.9e-18 95.1 185 35.1
Cpa.g.sc46.169 Carica papaya HOM05D003426 ORTHO05D003816 8.9e-18 95.1 236 30.9
Gohir.A07G027500 Gossypium hirsutum HOM05D003426 ORTHO05D003816 2.0e-17 94.0 176 37.5
CiPaw.15G166800 Carya illinoinensis HOM05D003426 ORTHO05D003816 3.4e-17 93.2 203 31.5
Gorai.001G032900 Gossypium raimondii HOM05D003426 ORTHO05D003816 4.4e-17 92.8 176 36.9
Solyc10g045030.1 Solanum lycopersicum HOM05D003426 ORTHO05D003816 5.8e-17 92.4 202 34.2
Atru.chr7.23 Acer truncatum HOM05D003426 ORTHO05D003816 7.6e-17 92.0 210 31.9
Glyma.17G073000 Glycine max HOM05D003426 ORTHO05D003816 9.9e-17 91.7 178 36.5
TWI34G0373 Tripterygium wilfordii HOM05D003426 ORTHO05D003816 1.7e-16 90.9 208 33.7
TAR626G1511 Trochodendron aralioides HOM05D003426 ORTHO05D003816 1.7e-16 90.9 211 31.8
PSO210G1729 Papaver somniferum HOM05D003426 ORTHO05D003816 2.9e-16 90.1 216 29.6
Hund08921 Selenicereus undatus HOM05D003426 ORTHO05D003816 2.9e-16 90.1 264 28.4
Actinidia38316 Actinidia chinensis HOM05D003426 ORTHO05D003816 4.9e-16 89.4 147 35.4
Thecc.09G028500 Theobroma cacao HOM05D003426 ORTHO05D003816 4.9e-16 89.4 253 30.0
Eucgr.C00251 Eucalyptus grandis HOM05D003426 ORTHO05D003816 8.4e-16 88.6 200 32.0
COL.COLO4_18823 Corchorus olitorius HOM05D003426 ORTHO05D003816 1.4e-15 87.8 238 30.3
VMungo1215G0444 Vigna mungo HOM05D003426 ORTHO05D003816 1.9e-15 87.4 190 31.1
DCAR_019401 Daucus carota HOM05D003426 ORTHO05D003816 2.4e-15 87.0 218 28.0
PSO210G2240 Papaver somniferum HOM05D003426 ORTHO05D003816 4.2e-15 86.3 216 28.2
CiPaw.16G108300 Carya illinoinensis HOM05D003426 ORTHO05D003816 7.1e-15 85.5 238 29.4
Lj4g0000658 Lotus japonicus HOM05D003426 ORTHO05D003816 9.3e-15 85.1 175 32.0
Sed0021282 Sechium edule HOM05D003426 ORTHO05D003816 2.1e-14 84.0 182 32.4
AUR62028339 Chenopodium quinoa HOM05D003426 ORTHO05D003816 2.7e-14 83.6 184 35.3
Dinv08190 Davidia involucrata HOM05D003426 ORTHO05D003816 4.6e-14 82.8 211 27.0
Glyma.02G205001 Glycine max HOM05D003426 ORTHO05D003816 4.6e-14 82.8 206 29.6
Rhsim02G0212600 Rhododendron simsii HOM05D003426 ORTHO05D003816 4.6e-14 82.8 209 33.5
Migut.J01365 Erythranthe guttata HOM05D003426 ORTHO05D003816 1.0e-13 81.6 246 27.6
PGR142G3879 Punica granatum HOM05D003426 ORTHO05D003816 1.3e-13 81.3 178 32.6
Nn2g12424 Nelumbo nucifera HOM05D003426 ORTHO05D003816 1.7e-13 80.9 206 32.5
Lj4g0006994 Lotus japonicus HOM05D003426 ORTHO05D003816 2.3e-13 80.5 174 33.3
Aqoxy7G03377 Aquilegia oxysepala HOM05D003426 ORTHO05D003816 3.0e-13 80.1 255 28.2
Phvul.003G155200 Phaseolus vulgaris HOM05D003426 ORTHO05D003816 3.9e-13 79.7 250 28.0
CANSAT11G1136 Cannabis sativa HOM05D003426 ORTHO05D003816 8.7e-13 78.6 250 28.0
THA.LOC104803917 Tarenaya hassleriana HOM05D003426 ORTHO05D003816 8.7e-13 78.6 180 30.0
AUR62025323 Chenopodium quinoa HOM05D003426 ORTHO05D003816 1.1e-12 78.2 199 34.2
Ah.09g228830 Amaranthus hybridus HOM05D006517 ORTHO05D007886 1.5e-12 77.8 210 30.5
MD02G1006400 Malus domestica HOM05D003426 ORTHO05D003816 1.5e-12 77.8 207 28.5
MD17G1259500 Malus domestica HOM05D003426 ORTHO05D003816 1.9e-12 77.4 237 26.6
Ca_21135_v3 Cicer arietinum L. HOM05D003426 ORTHO05D003816 2.5e-12 77.0 269 27.5
Ca_21137_v3 Cicer arietinum L. HOM05D003426 ORTHO05D003816 2.5e-12 77.0 269 27.5
CsaV3_2G007580 Cucumis sativus L. HOM05D003426 ORTHO05D003816 2.5e-12 77.0 175 28.0
Lj7P460T26 Lonicera japonica HOM05D003426 ORTHO05D003816 2.5e-12 77.0 175 30.9
Prupe.7G264500 Prunus persica HOM05D003426 ORTHO05D003816 3.3e-12 76.6 243 28.0
Nn8g39953 Nelumbo nucifera HOM05D003426 ORTHO05D003816 4.3e-12 76.3 220 28.2
ClCG02G014420 Citrullus lanatus HOM05D003426 ORTHO05D003816 7.3e-12 75.5 222 25.2
Manes.14G144800 Manihot esculenta HOM05D003426 ORTHO05D003816 7.3e-12 75.5 207 29.5
Medtr4g129690 Medicago truncatula HOM05D003426 ORTHO05D003816 1.3e-11 74.7 249 27.3
Solyc10g044984.1 Solanum lycopersicum HOM05D003426 ORTHO05D003816 1.6e-11 74.3 80 52.5
Actinidia38667 Actinidia chinensis HOM05D003426 ORTHO05D003816 2.1e-11 73.9 178 36.5
Migut.B00537 Erythranthe guttata HOM05D000650 ORTHO05D000735 2.1e-11 73.9 163 29.4
HanXRQChr10g0313661 Helianthus annuus HOM05D003426 ORTHO05D003816 2.1e-11 73.9 174 29.9
MBI14_g30955_MAGBIO Magnolia biondii HOM05D003426 ORTHO05D003816 2.1e-11 73.9 173 32.4
MD15G1151400 Malus domestica HOM05D003426 ORTHO05D003816 2.1e-11 73.9 202 29.2
SGA_v2.0_scaffold265G46098 Striga asiatica HOM05D003426 ORTHO05D003816 2.8e-11 73.6 176 31.2
Carub.0004s0319 Capsella rubella HOM05D012895 ORTHO05D014428 8.1e-11 72.0 141 31.2
ATR0580G137 Amborella trichopoda HOM05D003426 ORTHO05D003816 1.8e-10 70.9 173 27.7
SGA_v2.0_scaffold83G26387 Striga asiatica HOM05D000650 ORTHO05D000735 2.4e-10 70.5 228 23.2
MBI15_g18232_MAGBIO Magnolia biondii HOM05D003426 ORTHO05D003816 3.1e-10 70.1 166 31.3
Actinidia14135 Actinidia chinensis HOM05D022929 ORTHO05D003816 4.0e-10 69.7 203 28.6
arahy.Tifrunner.gnm1.ann1.H6N2T4 Arachis hypogaea HOM05D003426 ORTHO05D003816 5.3e-10 69.3 206 28.2
EL10Ac8g18943 Beta vulgaris HOM05D003426 ORTHO05D003816 6.9e-10 68.9 207 28.5
TAR636G1172 Trochodendron aralioides HOM05D003426 ORTHO05D003816 6.9e-10 68.9 158 33.5
Nn1g05634 Nelumbo nucifera HOM05D000650 ORTHO05D000735 9.0e-10 68.6 144 29.2
Psat4g009920 Pisum sativum HOM05D003426 ORTHO05D003816 1.2e-09 68.2 302 25.5
Rhsim03G0257700 Rhododendron simsii HOM05D003426 ORTHO05D003816 1.2e-09 68.2 107 37.4
arahy.Tifrunner.gnm1.ann1.N5DK6E Arachis hypogaea HOM05D003426 ORTHO05D003816 1.5e-09 67.8 204 27.5
TAR625G0266 Trochodendron aralioides HOM05D000650 ORTHO05D003816 1.5e-09 67.8 163 31.9
Medtr3g045840 Medicago truncatula HOM05D003426 ORTHO05D003816 2.0e-09 67.4 107 39.3
QL02p018769 Quercus lobata HOM05D003426 ORTHO05D003816 2.0e-09 67.4 142 30.3
MELO3C004128.2 Cucumis melo HOM05D003426 ORTHO05D003816 2.6e-09 67.0 220 26.8
Medtr4g130690 Medicago truncatula HOM05D003426 ORTHO05D003816 2.6e-09 67.0 100 43.0
SalBow1G0569 Salvia bowleyana HOM05D003426 ORTHO05D003816 5.8e-09 65.9 156 30.8
Sc14g0000930 Simmondsia chinensis HOM05D003426 ORTHO05D003816 5.8e-09 65.9 178 27.0
CSS0012807 Camellia sinensis var. sinensis HOM05D003426 ORTHO05D003816 9.9e-09 65.1 183 28.4
vmacro01871 Vaccinium macrocarpon HOM05D000650 ORTHO05D007302 9.9e-09 65.1 165 31.5
vmacro06066 Vaccinium macrocarpon HOM05D003426 ORTHO05D003816 1.3e-08 64.7 120 36.7
Actinidia02402 Actinidia chinensis HOM05D000650 ORTHO05D007302 2.2e-08 63.9 138 29.7
Phvul.010G050200 Phaseolus vulgaris HOM05D003426 ORTHO05D003816 2.9e-08 63.5 76 43.4
Psat4g009680 Pisum sativum HOM05D003426 ORTHO05D003816 2.9e-08 63.5 273 25.6
Hund02984 Selenicereus undatus HOM05D016866 ORTHO05D015160 2.9e-08 63.5 280 26.8
Cpa.g.sc20.26 Carica papaya HOM05D000650 ORTHO05D000735 3.8e-08 63.2 139 25.2
Lj5A228T44 Lonicera japonica HOM05D003426 ORTHO05D007302 3.8e-08 63.2 193 26.9
Oeu063550.2 Olea europaea HOM05D000650 ORTHO05D007302 3.8e-08 63.2 145 29.0
vmacro01873 Vaccinium macrocarpon HOM05D000650 ORTHO05D007302 3.8e-08 63.2 165 24.8
FAN20G2154 Fragaria x ananassa HOM05D003426 ORTHO05D007302 6.4e-08 62.4 170 28.2
HanXRQChr06g0168891 Helianthus annuus HOM05D006954 ORTHO05D008729 8.4e-08 62.0 143 29.4
HanXRQChr06g0169051 Helianthus annuus HOM05D006954 ORTHO05D008729 8.4e-08 62.0 143 29.4
QL11p025817 Quercus lobata HOM05D000650 ORTHO05D007302 8.4e-08 62.0 219 26.9
Glyma.17G072800 Glycine max HOM05D003426 ORTHO05D003816 1.1e-07 61.6 77 46.8
TAR625G0621 Trochodendron aralioides HOM05D003426 ORTHO05D003816 1.4e-07 61.2 162 25.9
Os06g0651300 Oryza sativa ssp. japonica HOM05D003426 ORTHO05D003816 1.9e-07 60.8 163 28.8
SEGI_37162 Sequoiadendron giganteum HOM05D015783 ORTHO05D021004 1.9e-07 60.8 131 30.5
SalBow6G1286 Salvia bowleyana HOM05D000650 ORTHO05D007302 2.4e-07 60.5 165 29.1
QL11p029412 Quercus lobata HOM05D000650 ORTHO05D007302 3.2e-07 60.1 217 24.9
AUR62032422 Chenopodium quinoa HOM05D016866 ORTHO05D003816 4.2e-07 59.7 178 24.2
DCAR_001849 Daucus carota HOM05D000650 ORTHO05D007302 5.4e-07 59.3 226 24.8
Prupe.8G073000 Prunus persica HOM05D000650 ORTHO05D007302 5.4e-07 59.3 162 26.5
Prupe.8G072900 Prunus persica HOM05D000650 ORTHO05D007302 7.1e-07 58.9 174 23.6
HPP92_015870 Vanilla planifolia HOM05D004872 ORTHO05D006050 7.1e-07 58.9 162 24.7
AUR62024799 Chenopodium quinoa HOM05D016866 ORTHO05D003816 9.3e-07 58.5 150 26.7
Lalb_Chr12g0198761 Lupinus albus HOM05D003426 ORTHO05D003816 9.3e-07 58.5 108 36.1
Lalb_Chr13g0300811 Lupinus albus HOM05D003426 ORTHO05D003816 1.2e-06 58.2 94 38.3
QL02p018764 Quercus lobata HOM05D003426 ORTHO05D003816 1.2e-06 58.2 135 30.4
Rhsim11G0141100 Rhododendron simsii HOM05D000650 ORTHO05D007302 1.2e-06 58.2 135 27.4
Nitab4.5_0004586g0030 Nicotiana tabacum HOM05D000650 ORTHO05D007302 1.6e-06 57.8 162 27.8
Psat4g010040 Pisum sativum HOM05D003426 ORTHO05D003816 1.6e-06 57.8 179 27.9
DCAR_029285 Daucus carota HOM05D000650 ORTHO05D007302 2.1e-06 57.4 223 26.0
Lj5A228T42 Lonicera japonica HOM05D000650 ORTHO05D007302 2.1e-06 57.4 187 27.3
CARHR184730 Cardamine hirsuta HOM05D012895 ORTHO05D014428 2.7e-06 57.0 103 31.1
Ca_18401_v3 Cicer arietinum L. HOM05D000650 ORTHO05D007302 2.7e-06 57.0 145 26.2
SGA_v2.0_scaffold12G06013 Striga asiatica HOM05D003426 ORTHO05D003816 4.6e-06 56.2 88 38.6
SGA_v2.0_scaffold1435G53950 Striga asiatica HOM05D003426 ORTHO05D003816 4.6e-06 56.2 88 38.6
Glyma.17G193101 Glycine max HOM05D003426 ORTHO05D003816 6.0e-06 55.8 77 46.8
RhsimUnG0162700 Rhododendron simsii HOM05D022929 ORTHO05D050680 6.0e-06 55.8 249 22.5
Aqoxy6G00819 Aquilegia oxysepala HOM05D000650 ORTHO05D000735 7.9e-06 55.5 169 26.0
Dinv17422 Davidia involucrata HOM05D003426 ORTHO05D003816 7.9e-06 55.5 91 38.5


User provided reference genes

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