Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen10g017280 Solanum pennellii HOM05D004862 ORTHO05D005841 2.4e-289 998.0 482 100.0
Solyc10g047120.2 Solanum lycopersicum HOM05D004862 ORTHO05D005841 1.0e-287 992.6 482 99.0
PGSC0003DMG400017691 Solanum tuberosum HOM05D004862 ORTHO05D005841 2.1e-277 958.4 518 90.2
CAN.G1.65 Capsicum annuum HOM05D004862 ORTHO05D005841 1.1e-260 902.9 482 89.2
Nitab4.5_0005079g0020 Nicotiana tabacum HOM05D004862 ORTHO05D005841 1.8e-252 875.5 491 85.9
Nitab4.5_0000078g0200 Nicotiana tabacum HOM05D004862 ORTHO05D005841 3.4e-251 871.3 491 86.2
CSS0014529 Camellia sinensis var. sinensis HOM05D004862 ORTHO05D005841 3.7e-245 851.3 495 80.4
CSS0027197 Camellia sinensis var. sinensis HOM05D004862 ORTHO05D005841 1.1e-244 849.7 495 80.2
Dinv24234 Davidia involucrata HOM05D004862 ORTHO05D005841 6.5e-242 840.5 488 80.9
Cc02_g18820 Coffea canephora HOM05D004862 ORTHO05D005841 6.7e-239 830.5 485 81.2
Duzib132G0210 Durio zibethinus HOM05D004862 ORTHO05D005841 7.4e-238 827.0 487 80.9
Rhsim11G0133700 Rhododendron simsii HOM05D004862 ORTHO05D005841 1.7e-237 825.9 491 79.6
Thecc.02G156500 Theobroma cacao HOM05D004862 ORTHO05D005841 1.1e-236 823.2 487 80.7
MD12G1223100 Malus domestica HOM05D004862 ORTHO05D005841 1.4e-236 822.8 482 79.7
FAN05G4126 Fragaria x ananassa HOM05D004862 ORTHO05D005841 1.8e-236 822.4 482 80.3
RcHm_v2.0_Chr3g0454151 Rosa chinensis HOM05D004862 ORTHO05D005841 1.2e-235 819.7 482 80.1
Oeu000228.1 Olea europaea HOM05D004862 ORTHO05D005841 2.6e-235 818.5 482 79.9
DCAR_021834 Daucus carota HOM05D004862 ORTHO05D005841 5.9e-235 817.4 483 79.1
CiPaw.13G145700 Carya illinoinensis HOM05D004862 ORTHO05D005841 7.7e-235 817.0 486 79.0
COL.COLO4_33088 Corchorus olitorius HOM05D004862 ORTHO05D005841 7.7e-235 817.0 487 80.1
FvH4_6g05370 Fragaria vesca HOM05D004862 ORTHO05D005841 1.7e-234 815.8 484 79.5
FAN14G5837 Fragaria x ananassa HOM05D004862 ORTHO05D005841 2.2e-234 815.5 484 79.5
Gohir.A01G012300 Gossypium hirsutum HOM05D004862 ORTHO05D005841 2.9e-234 815.1 487 79.1
FAN02G3155 Fragaria x ananassa HOM05D004862 ORTHO05D005841 8.5e-234 813.5 482 79.5
FAN14G4788 Fragaria x ananassa HOM05D004862 ORTHO05D005841 8.5e-234 813.5 484 79.3
Ciclev10015108m.g Citrus clementina HOM05D004862 ORTHO05D005841 2.5e-233 812.0 482 80.1
Glyma.08G075600 Glycine max HOM05D004862 ORTHO05D005841 5.5e-233 810.8 484 79.8
Phvul.002G205600 Phaseolus vulgaris HOM05D004862 ORTHO05D005841 1.2e-232 809.7 484 79.1
FAN09G3019 Fragaria x ananassa HOM05D004862 ORTHO05D005841 1.6e-232 809.3 482 79.3
Manes.14G165200 Manihot esculenta HOM05D004862 ORTHO05D005841 2.1e-232 808.9 482 79.5
Gorai.002G015300 Gossypium raimondii HOM05D004862 ORTHO05D005841 2.7e-232 808.5 487 78.6
Prupe.6G329700 Prunus persica HOM05D004862 ORTHO05D005841 3.6e-232 808.1 483 79.1
CANSAT54G0577 Cannabis sativa HOM05D004862 ORTHO05D005841 1.0e-231 806.6 486 78.2
SGA_v2.0_scaffold332G48937 Striga asiatica HOM05D004862 ORTHO05D005841 1.8e-231 805.8 482 79.5
Gohir.D13G060400 Gossypium hirsutum HOM05D004862 ORTHO05D005841 2.3e-231 805.4 484 80.0
Glyma.05G121000 Glycine max HOM05D004862 ORTHO05D005841 3.0e-231 805.1 484 78.5
Nn1g06191 Nelumbo nucifera HOM05D004862 ORTHO05D005841 1.5e-230 802.7 483 77.2
Lsat_1_v5_gn_9_117961 Lactuca sativa HOM05D004862 ORTHO05D005841 2.6e-230 802.0 483 77.8
Lj5A244T54 Lonicera japonica HOM05D004862 ORTHO05D005841 1.3e-229 799.7 482 78.0
Gorai.013G068500 Gossypium raimondii HOM05D004862 ORTHO05D005841 2.2e-229 798.9 498 77.9
arahy.Tifrunner.gnm1.ann1.WE1E8S Arachis hypogaea HOM05D004862 ORTHO05D005841 2.8e-229 798.5 484 77.1
arahy.Tifrunner.gnm1.ann1.34Q84K Arachis hypogaea HOM05D004862 ORTHO05D005841 6.3e-229 797.3 484 77.1
Cfa010154 Carpinus fangiana HOM05D004862 ORTHO05D005841 8.2e-229 797.0 483 78.1
Aqoxy6G00342 Aquilegia oxysepala HOM05D004862 ORTHO05D005841 1.4e-228 796.2 482 77.6
HanXRQChr03g0065771 Helianthus annuus HOM05D004862 ORTHO05D005841 2.4e-228 795.4 482 76.8
Haze_23539 Corylus avellana HOM05D004862 ORTHO05D005841 1.2e-227 793.1 483 77.4
Potri.001G207000 Populus trichocarpa HOM05D004862 ORTHO05D005841 1.5e-227 792.7 482 77.0
PGR042G3925 Punica granatum HOM05D004862 ORTHO05D005841 5.9e-227 790.8 485 76.9
Medtr4g094315 Medicago truncatula HOM05D004862 ORTHO05D005841 7.7e-227 790.4 484 77.5
Sed0027136 Sechium edule HOM05D004862 ORTHO05D005841 1.7e-226 789.3 483 77.4
Ca_29818_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 2.2e-226 788.9 485 77.7
Gohir.D01G013500 Gossypium hirsutum HOM05D004862 ORTHO05D005841 2.9e-226 788.5 472 78.8
VMungo0251G1232 Vigna mungo HOM05D004862 ORTHO05D005841 3.8e-226 788.1 509 74.9
Psat7g096360 Pisum sativum HOM05D004862 ORTHO05D005841 5.0e-226 787.7 484 76.4
TWI23G0249 Tripterygium wilfordii HOM05D004862 ORTHO05D005841 1.9e-225 785.8 482 77.0
Lj4g0019477 Lotus japonicus HOM05D004862 ORTHO05D005841 3.2e-225 785.0 485 76.1
Hund06875 Selenicereus undatus HOM05D004862 ORTHO05D005841 3.2e-225 785.0 491 76.0
vmacro01803 Vaccinium macrocarpon HOM05D004862 ORTHO05D005841 3.2e-225 785.0 572 68.0
Lj9A317G73 Lonicera japonica HOM05D004862 ORTHO05D005841 4.7e-224 781.2 491 76.6
ECA240G2004 Erigeron canadensis HOM05D004862 ORTHO05D005841 1.0e-223 780.0 474 76.8
Peaxi162Scf00003g03739 Petunia axillaris HOM05D004862 ORTHO05D005841 2.3e-223 778.9 417 90.2
MSTRG.16558 Avicennia marina HOM05D004862 ORTHO05D005841 8.8e-223 776.9 484 76.7
MELO3C012691.2 Cucumis melo HOM05D004862 ORTHO05D005841 2.0e-222 775.8 483 76.2
Gohir.A13G061500 Gossypium hirsutum HOM05D004862 ORTHO05D005841 5.7e-222 774.2 459 80.4
THA.LOC104818254 Tarenaya hassleriana HOM05D004862 ORTHO05D005841 9.7e-222 773.5 482 75.3
ClCG09G014610 Citrullus lanatus HOM05D004862 ORTHO05D005841 1.3e-221 773.1 482 75.9
PSO675G5038 Papaver somniferum HOM05D004862 ORTHO05D005841 1.3e-221 773.1 483 74.9
AUR62003397 Chenopodium quinoa HOM05D004862 ORTHO05D005841 4.8e-221 771.2 485 74.4
Ah.04g163010 Amaranthus hybridus HOM05D004862 ORTHO05D005841 6.3e-221 770.8 485 75.7
Thhalv10004120m.g Eutrema salsugineum HOM05D004862 ORTHO05D005841 5.3e-220 767.7 482 73.7
PSO541G6054 Papaver somniferum HOM05D004862 ORTHO05D005841 9.1e-220 766.9 488 74.0
QL01p020593 Quercus lobata HOM05D004862 ORTHO05D005841 1.2e-219 766.5 578 65.6
CARHR147430 Cardamine hirsuta HOM05D004862 ORTHO05D005841 2.6e-219 765.4 483 74.3
Lalb_Chr07g0189371 Lupinus albus HOM05D004862 ORTHO05D005841 4.5e-219 764.6 488 74.6
CDE02G2941 Ceratophyllum demersum HOM05D004862 ORTHO05D005841 5.9e-219 764.2 482 74.1
Migut.B00646 Erythranthe guttata HOM05D004862 ORTHO05D005841 7.7e-219 763.8 483 75.4
EL10Ac4g08938 Beta vulgaris HOM05D004862 ORTHO05D005841 1.7e-218 762.7 486 74.7
BraA06t27120Z Brassica rapa HOM05D004862 ORTHO05D005841 1.7e-218 762.7 482 73.2
BolC2t11381H Brassica oleracea HOM05D004862 ORTHO05D005841 6.5e-218 760.8 482 73.2
AL5G15180 Arabidopsis lyrata HOM05D004862 ORTHO05D005841 1.1e-217 760.0 482 73.4
A06p42030 Brassica napus HOM05D004862 ORTHO05D005841 1.1e-217 760.0 482 73.0
C07p35450 Brassica napus HOM05D004862 ORTHO05D005841 1.9e-217 759.2 482 72.8
BolC7t44069H Brassica oleracea HOM05D004862 ORTHO05D005841 1.9e-217 759.2 482 72.8
AT3G26410 Arabidopsis thaliana HOM05D004862 ORTHO05D005841 3.2e-217 758.4 482 72.8
Aa31LG2G6120 Aethionema arabicum HOM05D004862 ORTHO05D005841 6.1e-216 754.2 482 72.8
Carub.0005s0438 Capsella rubella HOM05D004862 ORTHO05D005841 1.4e-215 753.1 482 73.0
MBI06_g20970_MAGBIO Magnolia biondii HOM05D004862 ORTHO05D005841 1.4e-215 753.1 487 72.9
CsaV3_7G022230 Cucumis sativus L. HOM05D004862 ORTHO05D005841 1.8e-215 752.7 458 77.1
Sp2g15560 Schrenkiella parvula HOM05D004862 ORTHO05D005841 3.0e-215 751.9 482 72.2
BcaB07g30229 Brassica carinata HOM05D004862 ORTHO05D005841 1.2e-214 750.0 482 72.4
Sc09g0004450 Simmondsia chinensis HOM05D004862 ORTHO05D005841 2.0e-214 749.2 482 73.0
BraA02t08465Z Brassica rapa HOM05D004862 ORTHO05D005841 2.6e-214 748.8 482 72.2
BcaC03g17366 Brassica carinata HOM05D004862 ORTHO05D005841 7.5e-214 747.3 506 69.8
Sabra01G0160300 Salix brachista HOM05D004862 ORTHO05D005841 2.4e-212 742.3 566 64.3
ATR1136G066 Amborella trichopoda HOM05D004862 ORTHO05D005841 1.6e-211 739.6 488 71.3
GSVIVG01029751001 Vitis vinifera HOM05D004862 ORTHO05D005841 3.0e-207 725.3 482 73.7
Os02g0556400 Oryza sativa ssp. japonica HOM05D004862 ORTHO05D005841 5.2e-207 724.5 486 70.0
SalBow5G3806 Salvia bowleyana HOM05D004862 ORTHO05D005841 5.2e-207 724.5 571 63.4
Eucgr.G00660 Eucalyptus grandis HOM05D004862 ORTHO05D005841 9.8e-206 720.3 411 82.0
BcaNung06886 Brassica carinata HOM05D004862 ORTHO05D005841 4.1e-204 714.9 491 69.2
SalBow5G4932 Salvia bowleyana HOM05D004862 ORTHO05D005841 4.1e-204 714.9 596 60.7
AUR62004780 Chenopodium quinoa HOM05D004862 ORTHO05D005841 1.7e-202 709.5 543 64.8
SHI16537 Sapria himalayana HOM05D004862 ORTHO05D005841 2.9e-202 708.8 482 70.5
C02p53070 Brassica napus HOM05D004862 ORTHO05D005841 6.6e-202 707.6 506 67.6
Ciclev10008412m.g Citrus clementina HOM05D004862 ORTHO05D005841 2.9e-194 682.2 450 74.0
A02p34570 Brassica napus HOM05D004862 ORTHO05D005841 8.0e-184 647.5 411 73.2
Mapoly0006s0193 Marchantia polymorpha HOM05D004862 ORTHO05D005841 8.0e-184 647.5 488 64.1
SEGI_34202 Sequoiadendron giganteum HOM05D004862 ORTHO05D005841 1.1e-180 637.1 431 70.3
Pp3c13_18080 Physcomitrium patens HOM05D004862 ORTHO05D005841 2.1e-179 632.9 494 61.3
SMO115G0021 Selaginella moellendorffii HOM05D004862 ORTHO05D005841 2.5e-177 625.9 487 62.4
TAR116G0002 Trochodendron aralioides HOM05D004862 ORTHO05D005841 2.8e-176 622.5 374 78.6
Atru.chr6.1121 Acer truncatum HOM05D004862 ORTHO05D005841 1.2e-171 607.1 360 79.2
HPP92_004639 Vanilla planifolia HOM05D004862 ORTHO05D005841 2.1e-168 596.3 373 72.7
HPP92_004630 Vanilla planifolia HOM05D004862 ORTHO05D005841 1.2e-166 590.5 373 72.1
FAN05G4337 Fragaria x ananassa HOM05D004862 ORTHO05D005841 1.1e-161 573.9 327 82.9
TAR628G0283 Trochodendron aralioides HOM05D004862 ORTHO05D005841 6.2e-160 568.2 327 82.0
TPR.G31479 Trifolium pratense HOM05D004862 ORTHO05D005841 8.1e-160 567.8 342 76.9
Cpa.g.sc845.1 Carica papaya HOM05D004862 ORTHO05D005841 4.4e-158 562.0 327 80.7
CBR_g37214 Chara braunii HOM05D004862 ORTHO05D005841 1.3e-157 560.5 530 53.4
C02p53050 Brassica napus HOM05D004862 ORTHO05D005841 8.4e-149 531.2 324 76.5
BolC2t11366H Brassica oleracea HOM05D004862 ORTHO05D005841 8.4e-149 531.2 333 75.4
BcaC03g17340 Brassica carinata HOM05D004862 ORTHO05D005841 1.8e-146 523.5 360 69.7
Zm00001eb243830 Zea mays HOM05D004862 ORTHO05D005841 5.1e-146 521.9 328 75.9
SEGI_00112 Sequoiadendron giganteum HOM05D004862 ORTHO05D005841 2.1e-139 500.0 351 70.7
CsaV3_7G014980 Cucumis sativus L. HOM05D004862 ORTHO05D005841 3.1e-135 486.1 298 76.2
C02p52870 Brassica napus HOM05D004862 ORTHO05D005841 5.5e-132 475.3 327 70.3
MCO05G740 Micromonas commoda HOM05D004862 ORTHO05D005841 5.7e-105 385.6 498 41.8
Cre08.g359100 Chlamydomonas reinhardtii HOM05D004862 ORTHO05D005841 1.8e-103 380.6 386 49.5
CsaV3_UNG189490 Cucumis sativus L. HOM05D004862 ORTHO05D005841 2.2e-101 373.6 222 77.9
Ca_29817_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 7.7e-94 348.6 211 79.6
PRCOL_00003583 Prasinoderma coloniale HOM05D004862 ORTHO05D005841 6.1e-91 339.0 437 43.9
unitig_26.g9584 Utricularia gibba HOM05D004862 ORTHO05D005841 6.1e-91 339.0 230 69.1
Ca_25384_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 1.4e-79 301.2 187 78.6
CsaV3_7G015000 Cucumis sativus L. HOM05D004862 ORTHO05D005841 6.8e-74 282.3 159 82.4
CsaV3_UNG187480 Cucumis sativus L. HOM05D004862 ORTHO05D005841 6.8e-74 282.3 159 82.4
CsaV3_7G014960 Cucumis sativus L. HOM05D004862 ORTHO05D005841 3.2e-71 273.5 159 81.1
unitig_26.g9585 Utricularia gibba HOM05D004862 ORTHO05D005841 1.2e-70 271.6 145 84.1
Cfa021801 Carpinus fangiana HOM05D004862 ORTHO05D005841 2.2e-56 224.2 426 33.3
Ca_31280_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 2.4e-42 177.6 106 78.3
CsaV3_UNG197500 Cucumis sativus L. HOM05D004862 ORTHO05D005841 9.0e-42 175.6 106 78.3
AagrBONN_evm.TU.Sc2ySwM_344.4621 Anthoceros agrestis HOM05D004862 ORTHO05D005841 2.6e-41 174.1 141 58.2
CsaV3_7G014970 Cucumis sativus L. HOM05D004862 ORTHO05D005841 2.6e-41 174.1 94 86.2
CsaV3_7G015010 Cucumis sativus L. HOM05D004862 ORTHO05D005841 7.6e-41 172.6 93 86.0
BolC2t11379H Brassica oleracea HOM05D004862 ORTHO05D005841 5.4e-39 166.4 119 68.9
Potri.003G022650 Populus trichocarpa HOM05D004862 ORTHO05D005841 2.9e-32 144.1 91 71.4
TAR628G0087 Trochodendron aralioides HOM05D004862 ORTHO05D005841 2.7e-22 110.9 67 73.1
Actinidia00239 Actinidia chinensis HOM05D004862 ORTHO05D005841 7.4e-20 102.8 87 57.5
Potri.003G022701 Populus trichocarpa HOM05D004862 ORTHO05D005841 2.8e-19 100.9 76 65.8
CsaV3_7G014950 Cucumis sativus L. HOM05D004862 ORTHO05D005841 1.4e-18 98.6 65 66.2
Cfa010153 Carpinus fangiana HOM05D004862 ORTHO05D005841 6.9e-18 96.3 70 65.7
unitig_26.g9586 Utricularia gibba HOM05D004862 ORTHO05D005841 5.8e-17 93.2 69 68.1
Dinv28090 Davidia involucrata HOM05D000259 ORTHO05D000155 4.3e-12 77.0 122 37.7
MCO05G371 Micromonas commoda HOM05D004862 ORTHO05D267887 5.0e-08 63.5 130 34.6


User provided reference genes

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