Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen10g013910 Solanum pennellii HOM05D006764 ORTHO05D008516 6.9e-190 667.2 337 100.0
Solyc10g044910.2 Solanum lycopersicum HOM05D006764 ORTHO05D008516 1.9e-187 659.1 337 99.1
Nitab4.5_0000667g0120 Nicotiana tabacum HOM05D006764 ORTHO05D008516 1.8e-142 509.6 328 80.8
Dinv01845 Davidia involucrata HOM05D006764 ORTHO05D008516 1.1e-134 483.8 335 71.9
Peaxi162Scf00002g00261 Petunia axillaris HOM05D006764 ORTHO05D008516 1.3e-132 476.9 326 77.6
CAN.G1108.5 Capsicum annuum HOM05D006764 ORTHO05D008516 5.0e-132 474.9 286 85.7
Actinidia39013 Actinidia chinensis HOM05D006764 ORTHO05D008516 3.4e-128 462.2 325 69.5
Cc02_g22970 Coffea canephora HOM05D006764 ORTHO05D008516 8.3e-127 457.6 318 69.8
GSVIVG01023281001 Vitis vinifera HOM05D006764 ORTHO05D008516 4.7e-122 441.8 324 68.8
Nitab4.5_0008098g0020 Nicotiana tabacum HOM05D006764 ORTHO05D008516 1.4e-121 440.3 337 72.1
CSS0013576 Camellia sinensis var. sinensis HOM05D006764 ORTHO05D008516 8.8e-121 437.6 336 67.0
ECA234G3405 Erigeron canadensis HOM05D006764 ORTHO05D008516 2.2e-119 433.0 337 63.8
Potri.004G222300 Populus trichocarpa HOM05D006764 ORTHO05D008516 3.7e-119 432.2 334 64.7
Atru.chr6.751 Acer truncatum HOM05D006764 ORTHO05D008516 6.3e-119 431.4 335 65.7
Rhsim11G0125600 Rhododendron simsii HOM05D006764 ORTHO05D008516 1.2e-117 427.2 333 63.4
TAR628G0031 Trochodendron aralioides HOM05D006764 ORTHO05D008516 4.5e-117 425.2 330 63.3
HanXRQChr10g0294521 Helianthus annuus HOM05D006764 ORTHO05D008516 2.9e-116 422.5 340 63.8
Ciclev10001742m.g Citrus clementina HOM05D006764 ORTHO05D008516 5.0e-116 421.8 335 63.0
Gohir.A04G130100 Gossypium hirsutum HOM05D006764 ORTHO05D008516 1.1e-115 420.6 337 60.2
Manes.07G022500 Manihot esculenta HOM05D006764 ORTHO05D008516 1.5e-115 420.2 336 63.1
Prupe.1G576600 Prunus persica HOM05D006764 ORTHO05D008516 1.5e-115 420.2 332 64.2
Gorai.012G166600 Gossypium raimondii HOM05D006764 ORTHO05D008516 4.2e-115 418.7 335 60.6
CiPaw.05G051400 Carya illinoinensis HOM05D006764 ORTHO05D008516 9.5e-115 417.5 323 63.8
MD08G1240100 Malus domestica HOM05D006764 ORTHO05D008516 1.2e-114 417.2 332 63.6
Gohir.D04G175300 Gossypium hirsutum HOM05D006764 ORTHO05D008516 1.4e-113 413.7 335 60.0
QL02p099872 Quercus lobata HOM05D006764 ORTHO05D008516 1.4e-113 413.7 335 60.9
FvH4_5g28680 Fragaria vesca HOM05D006764 ORTHO05D008516 1.3e-111 407.1 337 63.2
PGR042G2798 Punica granatum HOM05D006764 ORTHO05D008516 1.7e-111 406.8 312 63.1
MD15G1432200 Malus domestica HOM05D006764 ORTHO05D008516 1.4e-110 403.7 332 62.3
Thecc.02G025400 Theobroma cacao HOM05D006764 ORTHO05D008516 3.2e-110 402.5 334 60.5
THA.LOC104807147 Tarenaya hassleriana HOM05D006764 ORTHO05D008516 7.0e-110 401.4 333 60.4
RcHm_v2.0_Chr7g0220831 Rosa chinensis HOM05D006764 ORTHO05D008516 1.2e-109 400.6 333 62.2
Eucgr.G00355 Eucalyptus grandis HOM05D006764 ORTHO05D008516 5.9e-109 398.3 330 61.2
Lj6g0021331 Lotus japonicus HOM05D006764 ORTHO05D008516 1.0e-108 397.5 325 61.5
CANSAT54G1059 Cannabis sativa HOM05D006764 ORTHO05D008516 2.3e-108 396.4 323 59.8
Sc16g0001680 Simmondsia chinensis HOM05D006764 ORTHO05D008516 2.9e-108 396.0 325 59.4
Psat1g221840 Pisum sativum HOM05D006764 ORTHO05D008516 7.3e-107 391.3 317 59.3
Medtr2g006100 Medicago truncatula HOM05D006764 ORTHO05D008516 1.2e-106 390.6 323 59.4
ClCG11G013370 Citrullus lanatus HOM05D006764 ORTHO05D008516 3.6e-106 389.0 336 58.3
MELO3C011834.2 Cucumis melo HOM05D006764 ORTHO05D008516 4.7e-106 388.7 335 59.1
Glyma.12G168200 Glycine max HOM05D006764 ORTHO05D008516 8.0e-106 387.9 317 60.3
AL6G41260 Arabidopsis lyrata HOM05D006764 ORTHO05D008516 4.0e-105 385.6 323 60.4
VMungo0540G1274 Vigna mungo HOM05D006764 ORTHO05D008516 6.8e-105 384.8 327 58.1
AT4G06676 Arabidopsis thaliana HOM05D006764 ORTHO05D008516 8.9e-105 384.4 319 61.1
CsaV3_5G029880 Cucumis sativus L. HOM05D006764 ORTHO05D008516 1.2e-104 384.0 334 59.0
TPR.G2075 Trifolium pratense HOM05D006764 ORTHO05D008516 2.6e-104 382.9 323 58.2
Sabra01G0168400 Salix brachista HOM05D006764 ORTHO05D008516 9.8e-104 380.9 325 60.9
Glyma.16G004200 Glycine max HOM05D006764 ORTHO05D008516 1.3e-103 380.6 317 59.3
Phvul.006G217900 Phaseolus vulgaris HOM05D006764 ORTHO05D008516 1.3e-103 380.6 327 57.8
CARHR260060 Cardamine hirsuta HOM05D006764 ORTHO05D008516 2.2e-103 379.8 316 60.8
arahy.Tifrunner.gnm1.ann1.FMX4TW Arachis hypogaea HOM05D006764 ORTHO05D008516 4.9e-103 378.6 317 59.9
PSO170G2545 Papaver somniferum HOM05D006764 ORTHO05D008516 1.4e-102 377.1 317 59.3
arahy.Tifrunner.gnm1.ann1.0E87YT Arachis hypogaea HOM05D006764 ORTHO05D008516 1.9e-102 376.7 317 59.6
Aqoxy6G00131 Aquilegia oxysepala HOM05D006764 ORTHO05D008516 7.0e-102 374.8 321 56.4
Migut.B00802 Erythranthe guttata HOM05D006764 ORTHO05D008516 9.2e-102 374.4 326 59.5
Nn5g27693 Nelumbo nucifera HOM05D006764 ORTHO05D008516 7.8e-101 371.3 323 57.6
Oeu023412.2 Olea europaea HOM05D006764 ORTHO05D008516 1.0e-100 370.9 276 67.8
EL10Ac6g14065 Beta vulgaris HOM05D006764 ORTHO05D008516 1.3e-100 370.5 335 56.4
SGA_v2.0_scaffold304G47898 Striga asiatica HOM05D006764 ORTHO05D008516 2.3e-100 369.8 271 67.2
Carub.0006s2639 Capsella rubella HOM05D006764 ORTHO05D008516 5.0e-100 368.6 324 59.9
HPP92_009268 Vanilla planifolia HOM05D006764 ORTHO05D008516 2.5e-99 366.3 318 56.3
TWI59G0639 Tripterygium wilfordii HOM05D006764 ORTHO05D008516 7.3e-99 364.8 335 56.7
unitig_748.g8283 Utricularia gibba HOM05D006764 ORTHO05D008516 2.1e-98 363.2 318 56.9
BcaB01g01263 Brassica carinata HOM05D006764 ORTHO05D008516 3.1e-97 359.4 318 58.5
vmacro01728 Vaccinium macrocarpon HOM05D006764 ORTHO05D008516 6.8e-97 358.2 276 63.8
Lalb_Chr18g0061021 Lupinus albus HOM05D006764 ORTHO05D008516 2.9e-95 352.8 317 57.4
BraA09t38619Z Brassica rapa HOM05D006764 ORTHO05D008516 4.9e-95 352.1 317 58.4
BcaC04g20869 Brassica carinata HOM05D006764 ORTHO05D008516 3.2e-94 349.4 316 57.3
Thhalv10028801m.g Eutrema salsugineum HOM05D006764 ORTHO05D008516 1.1e-91 340.9 316 56.0
Aa31LG3G14080 Aethionema arabicum HOM05D006764 ORTHO05D008516 3.6e-90 335.9 344 53.8
A09p30490 Brassica napus HOM05D006764 ORTHO05D008516 1.2e-88 330.9 329 54.7
AUR62042713 Chenopodium quinoa HOM05D006764 ORTHO05D008516 1.2e-88 330.9 335 51.9
COL.COLO4_17757 Corchorus olitorius HOM05D006764 ORTHO05D008516 2.7e-85 319.7 332 55.4
MBI17_g21477_MAGBIO Magnolia biondii HOM05D006764 ORTHO05D008516 4.6e-85 318.9 303 52.8
FAN13G1303 Fragaria x ananassa HOM05D006764 ORTHO05D008516 4.3e-83 312.4 301 57.1
FAN18G3575 Fragaria x ananassa HOM05D006764 ORTHO05D008516 1.4e-81 307.4 276 60.5
Sp6g10710 Schrenkiella parvula HOM05D006764 ORTHO05D008516 6.8e-81 305.1 317 53.0
FAN08G1175 Fragaria x ananassa HOM05D006764 ORTHO05D008516 3.8e-79 299.3 287 57.8
Lsat_1_v5_gn_5_103781 Lactuca sativa HOM05D006764 ORTHO05D008516 6.4e-79 298.5 232 65.9
ATR0709G017 Amborella trichopoda HOM05D006764 ORTHO05D008516 6.0e-77 292.0 336 45.5
Duzib132G0537 Durio zibethinus HOM05D006764 ORTHO05D008516 3.3e-75 286.2 304 50.7
SEGI_07291 Sequoiadendron giganteum HOM05D006764 ORTHO05D008516 9.6e-75 284.6 318 48.1
BolC9t56687H Brassica oleracea HOM05D006764 ORTHO05D008516 3.6e-74 282.7 255 57.3
Haze_01822 Corylus avellana HOM05D006764 ORTHO05D008516 6.2e-74 282.0 348 45.4
C09p38380 Brassica napus HOM05D006764 ORTHO05D008516 1.7e-71 273.9 239 57.7
SalBow7G3863 Salvia bowleyana HOM05D006764 ORTHO05D008516 1.7e-71 273.9 221 62.9
Zm00001eb082660 Zea mays HOM05D006764 ORTHO05D008516 2.9e-71 273.1 325 46.2
SHI04828 Sapria himalayana HOM05D006764 ORTHO05D008516 1.9e-67 260.4 274 52.2
AUR62014213 Chenopodium quinoa HOM05D006764 ORTHO05D008516 3.3e-67 259.6 335 45.4
DCAR_029270 Daucus carota HOM05D006764 ORTHO05D008516 1.6e-66 257.3 337 45.1
Ca_00050_v3 Cicer arietinum L. HOM05D006764 ORTHO05D008516 2.8e-66 256.5 239 54.4
PSO017G2259 Papaver somniferum HOM05D006764 ORTHO05D008516 1.8e-65 253.8 221 59.3
Pp3c15_15530 Physcomitrium patens HOM05D006764 ORTHO05D008516 2.7e-61 240.0 321 40.5
Sed0008550 Sechium edule HOM05D000755 ORTHO05D000642 4.6e-61 239.2 278 48.9
Cpa.g.sc30.47 Carica papaya HOM05D006764 ORTHO05D008516 3.7e-58 229.6 158 69.0
SMO367G0572 Selaginella moellendorffii HOM05D006764 ORTHO05D008516 8.1e-58 228.4 310 42.9
Mapoly0025s0102 Marchantia polymorpha HOM05D006764 ORTHO05D008516 1.2e-56 224.6 335 37.9
SEGI_28644 Sequoiadendron giganteum HOM05D006764 ORTHO05D008516 1.2e-40 171.4 175 49.7
Cfa005482 Carpinus fangiana HOM05D006764 ORTHO05D008516 6.5e-39 165.6 122 64.8
Lj5A261T39 Lonicera japonica HOM05D006764 ORTHO05D008516 4.6e-37 159.5 237 43.0
AagrBONN_evm.TU.Sc2ySwM_228.3284 Anthoceros agrestis HOM05D006764 ORTHO05D008516 5.1e-36 156.0 207 40.6
Hund12938 Selenicereus undatus HOM05D006764 ORTHO05D008516 8.8e-36 155.2 135 59.3
Cre01.g032350 Chlamydomonas reinhardtii HOM05D006764 ORTHO05D008516 1.5e-35 154.5 328 32.9
FAN04G0462 Fragaria x ananassa HOM05D006764 ORTHO05D008516 2.2e-34 150.6 84 82.1
CBR_g19125 Chara braunii HOM05D006764 ORTHO05D008516 1.1e-30 138.3 188 38.8
Os04g0433200 Oryza sativa ssp. japonica HOM05D006764 ORTHO05D008516 9.4e-30 135.2 125 52.0
Hund29476 Selenicereus undatus HOM05D006764 ORTHO05D008516 6.5e-23 112.5 109 46.8
Hund29477 Selenicereus undatus HOM05D006764 ORTHO05D008516 6.5e-23 112.5 109 46.8
MCO04G067 Micromonas commoda HOM05D006764 ORTHO05D008516 4.7e-21 106.3 321 27.7
Nn6g34108 Nelumbo nucifera HOM05D006764 ORTHO05D008516 1.8e-12 77.8 69 50.7
Nn3g16387 Nelumbo nucifera HOM05D006764 ORTHO05D008516 2.0e-11 74.3 63 50.8
vmacro01729 Vaccinium macrocarpon HOM05D006764 ORTHO05D008516 1.0e-07 62.0 39 71.8
MBI17_g13541_MAGBIO Magnolia biondii HOM05D006764 ORTHO05D008516 1.7e-07 61.2 71 45.1
Cc00_g10410 Coffea canephora HOM05D006764 ORTHO05D008516 1.1e-06 58.5 42 64.3
Nn1g06486 Nelumbo nucifera HOM05D027421 ORTHO05D008516 1.5e-06 58.2 116 31.0
Nn1g00311 Nelumbo nucifera HOM05D006764 ORTHO05D008516 9.5e-06 55.5 51 47.1


User provided reference genes

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