Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen10g012570 Solanum pennellii HOM05D005465 ORTHO05D006612 1.6e-45 185.7 90 100.0
Sopen02g016050 Solanum pennellii HOM05D005465 ORTHO05D006612 9.8e-43 176.4 97 91.8
Sopen10g006060 Solanum pennellii HOM05D005465 ORTHO05D006612 4.9e-42 174.1 90 95.6
Solyc10g082064.1 Solanum lycopersicum HOM05D005465 ORTHO05D006612 3.6e-37 157.9 127 69.3
PGSC0003DMG400026569 Solanum tuberosum HOM05D005465 ORTHO05D006612 4.4e-35 151.0 127 66.9
Nitab4.5_0000212g0270 Nicotiana tabacum HOM05D005465 ORTHO05D006612 6.6e-31 137.1 127 59.8
Peaxi162Scf00991g00013 Petunia axillaris HOM05D005465 ORTHO05D006612 8.1e-29 130.2 115 59.1
Nitab4.5_0008370g0030 Nicotiana tabacum HOM05D005465 ORTHO05D006612 1.1e-28 129.8 110 61.8
Nitab4.5_0010535g0020 Nicotiana tabacum HOM05D005465 ORTHO05D006612 1.1e-28 129.8 127 54.3
Nitab4.5_0005910g0030 Nicotiana tabacum HOM05D005465 ORTHO05D006612 3.1e-28 128.3 128 52.3
SGA_v2.0_scaffold4G02379 Striga asiatica HOM05D005465 ORTHO05D006612 8.9e-28 126.7 115 58.3
Actinidia26253 Actinidia chinensis HOM05D005465 ORTHO05D006612 2.6e-27 125.2 127 54.3
PGSC0003DMG400001360 Solanum tuberosum HOM05D005465 ORTHO05D006612 4.4e-27 124.4 127 52.8
SGA_v2.0_scaffold52G19131 Striga asiatica HOM05D005465 ORTHO05D006612 4.4e-27 124.4 115 55.7
Sopen10g022010 Solanum pennellii HOM05D005465 ORTHO05D006612 7.5e-27 123.6 97 68.0
Sopen02g033620 Solanum pennellii HOM05D005465 ORTHO05D006612 2.2e-26 122.1 127 51.2
Gohir.D03G097000 Gossypium hirsutum HOM05D005465 ORTHO05D006612 6.4e-26 120.6 115 53.9
Gorai.003G101800 Gossypium raimondii HOM05D005465 ORTHO05D006612 6.4e-26 120.6 115 53.9
Gohir.A03G070600 Gossypium hirsutum HOM05D005465 ORTHO05D006612 1.4e-25 119.4 115 53.0
PGSC0003DMG400035500 Solanum tuberosum HOM05D005465 ORTHO05D006612 1.4e-25 119.4 115 53.9
Duzib084G0509 Durio zibethinus HOM05D005465 ORTHO05D006612 1.9e-25 119.0 115 53.0
Duzib205G0879 Durio zibethinus HOM05D005465 ORTHO05D006612 1.9e-25 119.0 115 52.2
Manes.06G083500 Manihot esculenta HOM05D005465 ORTHO05D006612 3.2e-25 118.2 115 54.8
PGR044G0931 Punica granatum HOM05D005465 ORTHO05D006612 4.1e-25 117.9 116 55.2
Thecc.03G103400 Theobroma cacao HOM05D005465 ORTHO05D006612 4.1e-25 117.9 113 53.1
COL.COLO4_24335 Corchorus olitorius HOM05D005465 ORTHO05D006612 5.4e-25 117.5 115 52.2
CSS0002198 Camellia sinensis var. sinensis HOM05D005465 ORTHO05D006612 9.2e-25 116.7 127 50.4
Peaxi162Scf00166g00046 Petunia axillaris HOM05D005465 ORTHO05D006612 1.2e-24 116.3 116 49.1
Solyc02g088930.4 Solanum lycopersicum HOM05D005465 ORTHO05D006612 1.2e-24 116.3 124 49.2
unitig_899.g15102 Utricularia gibba HOM05D005465 ORTHO05D006612 2.7e-24 115.2 113 51.3
Hma1.2p1_0481F.1_g162260 Hydrangea macrophylla HOM05D005465 ORTHO05D006612 3.5e-24 114.8 112 51.8
Hma1.2p1_0481F.1_g162270 Hydrangea macrophylla HOM05D005465 ORTHO05D006612 3.5e-24 114.8 112 51.8
Nn4g23446 Nelumbo nucifera HOM05D005465 ORTHO05D006612 3.5e-24 114.8 115 53.0
Nn3g17466 Nelumbo nucifera HOM05D005465 ORTHO05D006612 1.3e-23 112.8 115 53.0
Rhsim10G0050100 Rhododendron simsii HOM05D005465 ORTHO05D006612 1.3e-23 112.8 110 53.6
Gorai.006G268200 Gossypium raimondii HOM05D005465 ORTHO05D006612 1.7e-23 112.5 115 49.6
Cc07_g04290 Coffea canephora HOM05D005465 ORTHO05D006612 3.0e-23 111.7 115 51.3
Sc14g0006350 Simmondsia chinensis HOM05D005465 ORTHO05D006612 5.1e-23 110.9 114 53.5
TAR622G0582 Trochodendron aralioides HOM05D005465 ORTHO05D006612 5.1e-23 110.9 113 50.4
ClCG04G011730 Citrullus lanatus HOM05D005465 ORTHO05D006612 8.6e-23 110.2 115 52.2
MELO3C002037.2 Cucumis melo HOM05D005465 ORTHO05D006612 1.1e-22 109.8 115 52.2
Aqoxy3G03677 Aquilegia oxysepala HOM05D005465 ORTHO05D006612 1.5e-22 109.4 113 50.4
Rhsim10G0048500 Rhododendron simsii HOM05D005465 ORTHO05D006612 1.5e-22 109.4 127 49.6
Cpa.g.sc746.2 Carica papaya HOM05D005465 ORTHO05D006612 2.5e-22 108.6 115 52.2
ECA232G0503 Erigeron canadensis HOM05D005465 ORTHO05D006612 2.5e-22 108.6 120 48.3
Ciclev10022497m.g Citrus clementina HOM05D005465 ORTHO05D006612 4.3e-22 107.8 115 49.6
CiPaw.11G054700 Carya illinoinensis HOM05D005465 ORTHO05D006612 5.6e-22 107.5 113 51.3
CsaV3_1G006060 Cucumis sativus L. HOM05D005465 ORTHO05D006612 5.6e-22 107.5 115 51.3
Lsat_1_v5_gn_4_171900 Lactuca sativa HOM05D005465 ORTHO05D006612 5.6e-22 107.5 127 48.0
Migut.H00618 Erythranthe guttata HOM05D005465 ORTHO05D006612 7.3e-22 107.1 115 48.7
Rhsim08G0075200 Rhododendron simsii HOM05D005465 ORTHO05D006612 7.3e-22 107.1 111 49.5
Ah.10g032300 Amaranthus hybridus HOM05D005465 ORTHO05D006612 9.5e-22 106.7 115 49.6
TAR371G0638 Trochodendron aralioides HOM05D005465 ORTHO05D006612 2.1e-21 105.5 113 49.6
Atru.chr9.555 Acer truncatum HOM05D005465 ORTHO05D006612 2.8e-21 105.1 113 50.4
AL6G18430 Arabidopsis lyrata HOM05D005465 ORTHO05D006612 3.6e-21 104.8 116 46.6
Rhsim10G0047800 Rhododendron simsii HOM05D005465 ORTHO05D006612 4.7e-21 104.4 127 48.0
TWI81G0357 Tripterygium wilfordii HOM05D005465 ORTHO05D006612 4.7e-21 104.4 115 48.7
AUR62018194 Chenopodium quinoa HOM05D005465 ORTHO05D006612 1.1e-20 103.2 118 46.6
AUR62038681 Chenopodium quinoa HOM05D005465 ORTHO05D006612 1.1e-20 103.2 118 46.6
Prupe.5G206300 Prunus persica HOM05D005465 ORTHO05D006612 1.1e-20 103.2 121 47.1
arahy.Tifrunner.gnm1.ann1.13IMLW Arachis hypogaea HOM05D005465 ORTHO05D006612 2.4e-20 102.1 115 48.7
BcaB01g05639 Brassica carinata HOM05D005465 ORTHO05D006612 2.4e-20 102.1 114 45.6
A03p03570 Brassica napus HOM05D005465 ORTHO05D006612 3.1e-20 101.7 111 45.9
BraA03t09707Z Brassica rapa HOM05D005465 ORTHO05D006612 3.1e-20 101.7 111 45.9
Carub.0006s0695 Capsella rubella HOM05D005465 ORTHO05D006612 3.1e-20 101.7 116 44.8
CARHR205120 Cardamine hirsuta HOM05D005465 ORTHO05D006612 3.1e-20 101.7 114 43.9
Cfa019348 Carpinus fangiana HOM05D005465 ORTHO05D006612 3.1e-20 101.7 113 47.8
Haze_07739 Corylus avellana HOM05D005465 ORTHO05D006612 3.1e-20 101.7 113 47.8
PSO063G4354 Papaver somniferum HOM05D005465 ORTHO05D006612 3.1e-20 101.7 113 48.7
AT5G08060 Arabidopsis thaliana HOM05D005465 ORTHO05D006612 4.0e-20 101.3 116 44.0
Sed0023287 Sechium edule HOM05D005465 ORTHO05D006612 4.0e-20 101.3 115 47.0
DCAR_011037 Daucus carota HOM05D005465 ORTHO05D006612 5.2e-20 100.9 125 48.0
Thhalv10015010m.g Eutrema salsugineum HOM05D005465 ORTHO05D006612 6.8e-20 100.5 114 44.7
VMungo1215G2862 Vigna mungo HOM05D005465 ORTHO05D006612 6.8e-20 100.5 113 46.9
Eucgr.K02534 Eucalyptus grandis HOM05D005465 ORTHO05D006612 1.2e-19 99.8 116 47.4
PSO782G3842 Papaver somniferum HOM05D005465 ORTHO05D006612 1.2e-19 99.8 113 46.9
RcHm_v2.0_Chr7g0183221 Rosa chinensis HOM05D005465 ORTHO05D006612 1.2e-19 99.8 112 48.2
A10p28580 Brassica napus HOM05D005465 ORTHO05D006612 1.5e-19 99.4 114 43.9
BolC9t59633H Brassica oleracea HOM05D005465 ORTHO05D006612 1.5e-19 99.4 114 43.9
BcaB08g37294 Brassica carinata HOM05D005465 ORTHO05D006612 2.0e-19 99.0 114 43.9
C09p68870 Brassica napus HOM05D005465 ORTHO05D006612 2.0e-19 99.0 114 43.9
FvH4_5g13720 Fragaria vesca HOM05D005465 ORTHO05D006612 2.0e-19 99.0 115 47.0
Glyma.17G079700 Glycine max HOM05D005465 ORTHO05D006612 2.6e-19 98.6 113 45.1
Sp6g34890 Schrenkiella parvula HOM05D005465 ORTHO05D006612 2.6e-19 98.6 114 44.7
THA.LOC104801135 Tarenaya hassleriana HOM05D005465 ORTHO05D006612 2.6e-19 98.6 114 44.7
BraA10t44907Z Brassica rapa HOM05D005465 ORTHO05D006612 4.4e-19 97.8 114 43.0
FAN13G0353 Fragaria x ananassa HOM05D005465 ORTHO05D006612 5.8e-19 97.4 112 46.4
FAN18G4042 Fragaria x ananassa HOM05D005465 ORTHO05D006612 5.8e-19 97.4 112 46.4
Rhsim10G0048300 Rhododendron simsii HOM05D005465 ORTHO05D006612 7.6e-19 97.1 104 50.0
Glyma.05G020100 Glycine max HOM05D005465 ORTHO05D006612 9.9e-19 96.7 113 45.1
BolC3t12939H Brassica oleracea HOM05D005465 ORTHO05D006612 1.3e-18 96.3 114 45.6
QL10p019840 Quercus lobata HOM05D005465 ORTHO05D006612 1.7e-18 95.9 114 43.0
Aa31LG3G18480 Aethionema arabicum HOM05D005465 ORTHO05D006612 2.2e-18 95.5 112 46.4
Lalb_Chr13g0302801 Lupinus albus HOM05D005465 ORTHO05D006612 2.2e-18 95.5 116 44.8
EL10Ac2g03144 Beta vulgaris HOM05D005465 ORTHO05D006612 4.9e-18 94.4 116 44.8
MD14G1213000 Malus domestica HOM05D005465 ORTHO05D006612 4.9e-18 94.4 115 46.1
Potri.004G123700 Populus trichocarpa HOM05D005465 ORTHO05D006612 4.9e-18 94.4 114 46.5
MD06G1226100 Malus domestica HOM05D005465 ORTHO05D006612 6.4e-18 94.0 110 48.2
BcaB05g21584 Brassica carinata HOM05D005465 ORTHO05D006612 1.4e-17 92.8 116 42.2
Phvul.003G183800 Phaseolus vulgaris HOM05D005465 ORTHO05D006612 1.4e-17 92.8 113 43.4
Zm00001eb152340 Zea mays HOM05D005465 ORTHO05D006612 1.4e-17 92.8 119 44.5
Zm00001eb370380 Zea mays HOM05D005465 ORTHO05D006612 1.4e-17 92.8 119 44.5
BraA02t04941Z Brassica rapa HOM05D005465 ORTHO05D006612 1.9e-17 92.4 113 43.4
Psat4g047600 Pisum sativum HOM05D005465 ORTHO05D006612 2.4e-17 92.0 115 45.2
SHI17457 Sapria himalayana HOM05D005465 ORTHO05D006612 5.4e-17 90.9 116 40.5
Lj4g0014841 Lotus japonicus HOM05D005465 ORTHO05D006612 2.1e-16 89.0 121 43.8
Os01g0763300 Oryza sativa ssp. japonica HOM05D005465 ORTHO05D006612 2.1e-16 89.0 118 41.5
TPR.G2036 Trifolium pratense HOM05D005465 ORTHO05D006612 2.7e-16 88.6 115 41.7
Gohir.D09G244200 Gossypium hirsutum HOM05D005465 ORTHO05D006612 4.6e-16 87.8 115 43.5
Oeu062167.1 Olea europaea HOM05D005465 ORTHO05D006612 4.6e-16 87.8 127 44.1
Medtr4g109650 Medicago truncatula HOM05D005465 ORTHO05D006612 6.0e-16 87.4 115 41.7
MBI16_g10835_MAGBIO Magnolia biondii HOM05D005465 ORTHO05D006612 1.7e-15 85.9 111 44.1
Ca_21764_v3 Cicer arietinum L. HOM05D005465 ORTHO05D006612 5.1e-15 84.3 115 42.6
Sabra04G0090300 Salix brachista HOM05D005465 ORTHO05D006612 5.1e-15 84.3 114 43.9
Peaxi162Scf00991g00114 Petunia axillaris HOM05D005465 ORTHO05D006612 1.1e-14 83.2 82 56.1
DCAR_025436 Daucus carota HOM05D005465 ORTHO05D006612 2.5e-14 82.0 119 41.2
Hma1.2p1_0029F.1_g018040 Hydrangea macrophylla HOM05D005465 ORTHO05D006612 7.3e-14 80.5 60 63.3
Actinidia17587 Actinidia chinensis HOM05D005465 ORTHO05D006612 9.6e-14 80.1 55 63.6
Dinv34936 Davidia involucrata HOM05D005465 ORTHO05D006612 9.6e-14 80.1 60 61.7
Gohir.A09G243500 Gossypium hirsutum HOM05D005465 ORTHO05D006612 8.1e-13 77.0 60 55.0
BcaB08g37291 Brassica carinata HOM05D005465 ORTHO05D006612 3.1e-12 75.1 51 58.8
FAN08G0639 Fragaria x ananassa HOM05D005465 ORTHO05D006612 1.3e-10 69.7 49 61.2
TAR622G1303 Trochodendron aralioides HOM05D005465 ORTHO05D006612 2.9e-10 68.6 52 57.7
CDE02G4042 Ceratophyllum demersum HOM05D005465 ORTHO05D006612 4.2e-09 64.7 59 50.8
EL10Ac5g11896 Beta vulgaris HOM05D005465 ORTHO05D006612 5.4e-09 64.3 100 39.0
EL10Ac5g12104 Beta vulgaris HOM05D005465 ORTHO05D006612 1.3e-07 59.7 59 52.5
Mapoly0019s0055 Marchantia polymorpha HOM05D005465 ORTHO05D006612 1.3e-07 59.7 77 35.1
SEGI_27681 Sequoiadendron giganteum HOM05D005465 ORTHO05D006612 3.0e-07 58.5 64 46.9
SMO263G0026 Selaginella moellendorffii HOM05D005465 ORTHO05D006612 6.6e-07 57.4 49 55.1
SEGI_31914 Sequoiadendron giganteum HOM05D005465 ORTHO05D006612 8.7e-07 57.0 57 49.1
SGA_v2.0_scaffold187G40263 Striga asiatica HOM05D005465 ORTHO05D006612 1.1e-06 56.6 97 38.1
Sopen02g033680 Solanum pennellii HOM05D005465 ORTHO05D006612 7.3e-06 53.9 59 50.8


User provided reference genes

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