Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen10g011810 Solanum pennellii HOM05D006344 ORTHO05D007744 3.4e-294 1014.2 496 100.0
Nitab4.5_0000228g0070 Nicotiana tabacum HOM05D006344 ORTHO05D007744 1.2e-211 740.0 546 71.8
CSS0047635 Camellia sinensis var. sinensis HOM05D006344 ORTHO05D007744 1.0e-189 667.2 527 65.7
SalBow8G3479 Salvia bowleyana HOM05D006344 ORTHO05D007744 6.1e-187 657.9 547 62.7
CSS0005629 Camellia sinensis var. sinensis HOM05D006344 ORTHO05D007744 1.0e-186 657.1 537 63.9
MSTRG.20684 Avicennia marina HOM05D006344 ORTHO05D007744 1.8e-186 656.4 521 64.5
Migut.B01523 Erythranthe guttata HOM05D006344 ORTHO05D007744 2.8e-184 649.0 515 66.0
Oeu011251.1 Olea europaea HOM05D006344 ORTHO05D007744 3.7e-184 648.7 548 62.0
SGA_v2.0_scaffold52G19234 Striga asiatica HOM05D006344 ORTHO05D007744 1.8e-183 646.4 506 64.4
Cc02_g25170 Coffea canephora HOM05D006344 ORTHO05D007744 9.2e-183 644.0 509 63.9
Potri.002G138600 Populus trichocarpa HOM05D006344 ORTHO05D007744 2.7e-182 642.5 501 64.7
QL04p029920 Quercus lobata HOM05D006344 ORTHO05D007744 1.6e-179 633.3 439 70.2
vmacro13505 Vaccinium macrocarpon HOM05D006344 ORTHO05D007744 8.0e-179 630.9 498 64.7
Cfa011061 Carpinus fangiana HOM05D006344 ORTHO05D007744 3.0e-178 629.0 438 71.0
Nn1g00813 Nelumbo nucifera HOM05D006344 ORTHO05D007744 3.4e-177 625.5 441 69.8
Aqoxy3G02683 Aquilegia oxysepala HOM05D006344 ORTHO05D007744 2.2e-176 622.9 451 67.4
Haze_02860 Corylus avellana HOM05D006344 ORTHO05D007744 2.2e-176 622.9 452 69.0
Sabra02G0107400 Salix brachista HOM05D006344 ORTHO05D007744 6.4e-176 621.3 522 61.5
Manes.05G055800 Manihot esculenta HOM05D006344 ORTHO05D007744 1.1e-175 620.5 467 67.2
CANSAT25G2006 Cannabis sativa HOM05D006344 ORTHO05D007744 7.8e-174 614.4 471 66.0
MD07G1109900 Malus domestica HOM05D006344 ORTHO05D007744 1.7e-173 613.2 451 68.7
Eucgr.D01222 Eucalyptus grandis HOM05D006344 ORTHO05D007744 2.3e-173 612.8 440 68.2
unitig_0.g1343 Utricularia gibba HOM05D006344 ORTHO05D007744 3.9e-173 612.1 494 63.6
arahy.Tifrunner.gnm1.ann1.6KIV37 Arachis hypogaea HOM05D006344 ORTHO05D007744 6.6e-173 611.3 440 68.4
arahy.Tifrunner.gnm1.ann1.7K9T15 Arachis hypogaea HOM05D006344 ORTHO05D007744 6.6e-173 611.3 440 68.4
EL10Ac1g00751 Beta vulgaris HOM05D006344 ORTHO05D007744 4.3e-172 608.6 437 65.9
TWI23G1150 Tripterygium wilfordii HOM05D006344 ORTHO05D007744 7.3e-172 607.8 509 61.7
TAR375G1150 Trochodendron aralioides HOM05D006344 ORTHO05D007744 7.3e-172 607.8 516 62.2
Phvul.010G046700 Phaseolus vulgaris HOM05D006344 ORTHO05D007744 9.5e-172 607.4 510 61.4
Dinv44052 Davidia involucrata HOM05D006344 ORTHO05D007744 1.2e-171 607.1 385 75.8
Glyma.12G152700 Glycine max HOM05D006344 ORTHO05D007744 1.6e-171 606.7 488 63.7
ECA234G3853 Erigeron canadensis HOM05D006344 ORTHO05D007744 2.1e-171 606.3 495 62.0
VMungo0331G0733 Vigna mungo HOM05D006344 ORTHO05D007744 4.7e-171 605.1 484 63.0
AUR62013752 Chenopodium quinoa HOM05D006344 ORTHO05D007744 1.4e-170 603.6 498 61.2
Prupe.2G133500 Prunus persica HOM05D006344 ORTHO05D007744 1.4e-170 603.6 446 67.9
PSO782G2130 Papaver somniferum HOM05D006344 ORTHO05D007744 3.1e-170 602.4 512 61.1
MELO3C005945.2 Cucumis melo HOM05D006344 ORTHO05D007744 8.9e-170 600.9 433 67.9
Lj3g0017960 Lotus japonicus HOM05D006344 ORTHO05D007744 1.2e-169 600.5 488 62.5
Solyc10g037900.1 Solanum lycopersicum HOM05D006344 ORTHO05D007744 1.3e-168 597.0 302 98.3
HanXRQChr17g0562521 Helianthus annuus HOM05D006344 ORTHO05D007744 2.9e-168 595.9 505 60.8
Lsat_1_v5_gn_4_39300 Lactuca sativa HOM05D006344 ORTHO05D007744 2.9e-168 595.9 509 60.7
Thecc.01G396400 Theobroma cacao HOM05D006344 ORTHO05D007744 2.9e-168 595.9 507 61.9
RcHm_v2.0_Chr1g0348081 Rosa chinensis HOM05D006344 ORTHO05D007744 6.4e-168 594.7 447 66.9
Lalb_Chr12g0210531 Lupinus albus HOM05D006344 ORTHO05D007744 1.1e-167 594.0 482 61.6
Gorai.008G109500 Gossypium raimondii HOM05D006344 ORTHO05D007744 1.4e-167 593.6 501 60.9
Hund17097 Selenicereus undatus HOM05D006344 ORTHO05D007744 1.9e-167 593.2 461 65.5
Ciclev10019814m.g Citrus clementina HOM05D006344 ORTHO05D007744 3.2e-167 592.4 443 65.9
Glyma.06G240000 Glycine max HOM05D006344 ORTHO05D007744 1.2e-166 590.5 449 65.5
Gohir.A12G097600 Gossypium hirsutum HOM05D006344 ORTHO05D007744 1.2e-166 590.5 507 62.1
Gohir.D12G100600 Gossypium hirsutum HOM05D006344 ORTHO05D007744 1.2e-166 590.5 505 61.0
THA.LOC104802498 Tarenaya hassleriana HOM05D006344 ORTHO05D007744 2.7e-166 589.3 523 61.0
Duzib138G0679 Durio zibethinus HOM05D006344 ORTHO05D007744 3.5e-166 589.0 449 67.5
Ca_14805_v3 Cicer arietinum L. HOM05D006344 ORTHO05D007744 1.7e-165 586.6 445 65.4
AUR62023399 Chenopodium quinoa HOM05D006344 ORTHO05D007744 3.0e-165 585.9 439 64.0
Medtr8g007155 Medicago truncatula HOM05D006344 ORTHO05D007744 3.9e-165 585.5 501 60.7
FAN06G2435 Fragaria x ananassa HOM05D006344 ORTHO05D007744 8.6e-165 584.3 485 61.9
FAN06G3766 Fragaria x ananassa HOM05D006344 ORTHO05D007744 1.9e-164 583.2 447 65.3
FvH4_7g10380 Fragaria vesca HOM05D006344 ORTHO05D007744 2.5e-164 582.8 485 61.9
GSVIVG01018294001 Vitis vinifera HOM05D006344 ORTHO05D007744 2.5e-164 582.8 388 72.4
Sc26g0001660 Simmondsia chinensis HOM05D006344 ORTHO05D007744 3.3e-164 582.4 428 68.0
FAN10G1159 Fragaria x ananassa HOM05D006344 ORTHO05D007744 5.6e-164 581.6 478 62.1
Duzib133G0621 Durio zibethinus HOM05D006344 ORTHO05D007744 2.1e-163 579.7 504 60.9
FAN10G0415 Fragaria x ananassa HOM05D006344 ORTHO05D007744 2.8e-163 579.3 478 61.9
FAN01G1631 Fragaria x ananassa HOM05D006344 ORTHO05D007744 2.3e-162 576.2 478 61.7
Thhalv10001417m.g Eutrema salsugineum HOM05D006344 ORTHO05D007744 5.2e-162 575.1 523 59.1
Sp4g26830 Schrenkiella parvula HOM05D006344 ORTHO05D007744 3.4e-161 572.4 518 58.7
Rhsim07G0037100 Rhododendron simsii HOM05D006344 ORTHO05D007744 5.8e-161 571.6 494 60.1
A05p04940 Brassica napus HOM05D006344 ORTHO05D007744 8.3e-160 567.8 449 65.0
Psat4g223640 Pisum sativum HOM05D006344 ORTHO05D007744 1.1e-159 567.4 439 63.6
TPR.G32142 Trifolium pratense HOM05D006344 ORTHO05D007744 2.4e-159 566.2 487 60.2
AL4G43840 Arabidopsis lyrata HOM05D006344 ORTHO05D007744 3.2e-159 565.8 459 65.4
BraA05t19467Z Brassica rapa HOM05D006344 ORTHO05D007744 3.2e-159 565.8 449 64.8
FAN03G0097 Fragaria x ananassa HOM05D006344 ORTHO05D007744 3.5e-158 562.4 527 56.5
AT2G44760 Arabidopsis thaliana HOM05D006344 ORTHO05D007744 3.9e-157 558.9 520 59.4
C04p05760 Brassica napus HOM05D006344 ORTHO05D007744 6.6e-157 558.1 441 64.4
ATR0665G564 Amborella trichopoda HOM05D006344 ORTHO05D007744 7.3e-156 554.7 449 63.0
CARHR139980 Cardamine hirsuta HOM05D006344 ORTHO05D007744 2.8e-155 552.7 453 62.7
BcaB02g08857 Brassica carinata HOM05D006344 ORTHO05D007744 4.7e-155 552.0 447 63.8
BcaC02g12272 Brassica carinata HOM05D006344 ORTHO05D007744 8.1e-155 551.2 441 63.3
BolC4t22205H Brassica oleracea HOM05D006344 ORTHO05D007744 8.1e-155 551.2 441 63.3
CiPaw.14G019800 Carya illinoinensis HOM05D006344 ORTHO05D007744 8.9e-154 547.7 436 64.4
Carub.0004s2733 Capsella rubella HOM05D006344 ORTHO05D007744 2.0e-153 546.6 454 62.8
Aa31LG1G26310 Aethionema arabicum HOM05D006344 ORTHO05D007744 3.8e-152 542.3 543 55.4
PGSC0003DMG400026373 Solanum tuberosum HOM05D006344 ORTHO05D007744 3.8e-152 542.3 308 89.9
COL.COLO4_12394 Corchorus olitorius HOM05D006344 ORTHO05D007744 2.4e-151 539.7 371 69.3
DCAR_025059 Daucus carota HOM05D006344 ORTHO05D007744 3.9e-149 532.3 447 59.7
Zm00001eb427880 Zea mays HOM05D006344 ORTHO05D007744 1.9e-148 530.0 498 55.0
ClCG05G000130 Citrullus lanatus HOM05D006344 ORTHO05D007744 3.3e-148 529.3 433 62.8
Os04g0545200 Oryza sativa ssp. japonica HOM05D006344 ORTHO05D007744 1.2e-145 520.8 499 54.1
Actinidia18353 Actinidia chinensis HOM05D006344 ORTHO05D007744 4.4e-145 518.8 417 64.5
CDE06G1994 Ceratophyllum demersum HOM05D006344 ORTHO05D007744 5.8e-145 518.5 453 58.3
CsaV3_3G007240 Cucumis sativus L. HOM05D006344 ORTHO05D007744 8.4e-144 514.6 628 46.3
HPP92_012970 Vanilla planifolia HOM05D006344 ORTHO05D007744 6.0e-142 508.4 460 57.6
Sed0012570 Sechium edule HOM05D006344 ORTHO05D007744 5.1e-141 505.4 441 59.6
PGR004G1920 Punica granatum HOM05D006344 ORTHO05D007744 9.6e-140 501.1 443 58.9
COL.COLO4_10415 Corchorus olitorius HOM05D006344 ORTHO05D007744 2.1e-139 500.0 422 60.7
Nitab4.5_0009461g0020 Nicotiana tabacum HOM05D006344 ORTHO05D007744 1.2e-137 494.2 335 72.2
Cpa.g.sc22.25 Carica papaya HOM05D006344 ORTHO05D007744 4.2e-135 485.7 385 63.6
CAN.G768.2 Capsicum annuum HOM05D006344 ORTHO05D007744 1.3e-133 480.7 309 80.6
Lj9C555G1 Lonicera japonica HOM05D006344 ORTHO05D007744 7.1e-119 431.8 256 78.1
Peaxi162Scf00103g00912 Petunia axillaris HOM05D006344 ORTHO05D007744 1.8e-109 400.6 310 69.7
Solyc10g037890.3 Solanum lycopersicum HOM05D006344 ORTHO05D007744 4.6e-102 375.9 183 98.9
Peaxi162Scf00103g00911 Petunia axillaris HOM05D006344 ORTHO05D007744 2.2e-96 357.1 192 86.5
Atru.chr5.116 Acer truncatum HOM05D006344 ORTHO05D007744 1.1e-95 354.8 239 72.4
PGSC0003DMG400003447 Solanum tuberosum HOM05D006344 ORTHO05D007744 9.1e-90 335.1 163 97.5
Pp3c5_3810 Physcomitrium patens HOM05D006344 ORTHO05D007744 3.1e-74 283.5 479 36.7
SEGI_37248 Sequoiadendron giganteum HOM05D006344 ORTHO05D007744 1.6e-70 271.2 222 56.3
AagrBONN_evm.TU.Sc2ySwM_117.1538 Anthoceros agrestis HOM05D006344 ORTHO05D007744 7.5e-60 235.7 634 28.7
Mapoly0089s0048 Marchantia polymorpha HOM05D006344 ORTHO05D007744 7.0e-58 229.2 595 30.1
SMO340G0133 Selaginella moellendorffii HOM05D002542 ORTHO05D007744 3.4e-52 210.3 457 30.4
Atru.chr5.115 Acer truncatum HOM05D006344 ORTHO05D007744 4.3e-47 193.4 198 54.0
SEGI_14599 Sequoiadendron giganteum HOM05D006344 ORTHO05D007744 6.2e-38 162.9 179 46.4
Lj9A555T32 Lonicera japonica HOM05D006344 ORTHO05D007744 2.4e-37 161.0 144 61.1
SMO356G0573 Selaginella moellendorffii HOM05D002542 ORTHO05D005078 2.6e-36 157.5 365 29.6
Peaxi162Scf00562g00069 Petunia axillaris HOM05D006344 ORTHO05D007744 2.4e-29 134.4 165 50.9
HanXRQChr09g0257941 Helianthus annuus HOM05D006344 ORTHO05D007744 5.8e-28 129.8 108 60.2
SEGI_30390 Sequoiadendron giganteum HOM05D006344 ORTHO05D007744 5.1e-24 116.7 99 54.5
Actinidia26517 Actinidia chinensis HOM05D006344 ORTHO05D007744 2.5e-23 114.4 62 82.3
Peaxi162Scf00562g00611 Petunia axillaris HOM05D006344 ORTHO05D007744 4.9e-19 100.1 94 67.0
CBR_g48168 Chara braunii HOM05D006344 ORTHO05D007744 7.9e-17 92.8 156 34.0
CDE06G0422 Ceratophyllum demersum HOM05D006344 ORTHO05D007744 8.7e-16 89.4 58 65.5
Cre16.g684900 Chlamydomonas reinhardtii HOM05D006344 ORTHO05D007744 2.6e-12 77.8 280 25.7
COL.COLO4_10413 Corchorus olitorius HOM05D006344 ORTHO05D007744 1.1e-10 72.4 76 51.3
CBR_g48169 Chara braunii HOM05D006344 ORTHO05D007744 3.2e-10 70.9 129 33.3
HanXRQChr01g0015371 Helianthus annuus HOM05D000263 ORTHO05D000213 2.1e-09 68.2 42 71.4
BcaB08g35012 Brassica carinata HOM05D006344 ORTHO05D007744 3.9e-08 63.9 42 64.3
Peaxi162Scf00562g00612 Petunia axillaris HOM05D006344 ORTHO05D007744 8.2e-06 56.2 36 69.4


User provided reference genes

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