Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen10g011740 Solanum pennellii HOM05D005285 ORTHO05D006829 2.4e-209 731.9 355 100.0
Nitab4.5_0002012g0040 Nicotiana tabacum HOM05D005285 ORTHO05D006829 2.5e-190 668.7 351 92.6
Nitab4.5_0000050g0030 Nicotiana tabacum HOM05D005285 ORTHO05D006829 6.1e-189 664.1 349 92.6
Peaxi162Scf00042g00510 Petunia axillaris HOM05D005285 ORTHO05D006829 6.1e-189 664.1 358 89.7
Dinv09380 Davidia involucrata HOM05D005285 ORTHO05D006829 1.4e-177 626.3 363 83.5
Lj9A629T99 Lonicera japonica HOM05D005285 ORTHO05D006829 1.4e-177 626.3 357 84.3
Cc02_g27470 Coffea canephora HOM05D005285 ORTHO05D006829 7.0e-177 624.0 361 83.4
CSS0013341 Camellia sinensis var. sinensis HOM05D005285 ORTHO05D006829 3.8e-175 618.2 362 82.6
Duzib268G1126 Durio zibethinus HOM05D005285 ORTHO05D006829 3.8e-175 618.2 359 83.8
Thecc.01G414500 Theobroma cacao HOM05D005285 ORTHO05D006829 6.6e-175 617.5 359 83.8
Gohir.A08G026900 Gossypium hirsutum HOM05D005285 ORTHO05D006829 7.3e-174 614.0 361 83.1
Rhsim01G0131200 Rhododendron simsii HOM05D005285 ORTHO05D006829 1.6e-173 612.8 368 79.6
PGR044G0372 Punica granatum HOM05D005285 ORTHO05D006829 2.8e-173 612.1 362 81.8
Gorai.004G035700 Gossypium raimondii HOM05D005285 ORTHO05D006829 6.1e-173 610.9 361 82.3
FvH4_7g00610 Fragaria vesca HOM05D005285 ORTHO05D006829 1.0e-172 610.1 353 83.0
FAN06G0391 Fragaria x ananassa HOM05D005285 ORTHO05D006829 1.0e-172 610.1 353 83.0
FAN10G3755 Fragaria x ananassa HOM05D005285 ORTHO05D006829 1.0e-172 610.1 353 83.0
Actinidia20684 Actinidia chinensis HOM05D005285 ORTHO05D006829 1.4e-172 609.8 361 80.6
DCAR_029637 Daucus carota HOM05D005285 ORTHO05D006829 1.8e-172 609.4 357 81.5
FAN01G1197 Fragaria x ananassa HOM05D005285 ORTHO05D006829 5.2e-172 607.8 353 83.0
Migut.B01343 Erythranthe guttata HOM05D005285 ORTHO05D006829 8.9e-172 607.1 360 80.8
FAN03G1002 Fragaria x ananassa HOM05D005285 ORTHO05D006829 8.9e-172 607.1 356 81.7
GSVIVG01032048001 Vitis vinifera HOM05D005285 ORTHO05D006829 8.9e-172 607.1 362 80.1
Gohir.D08G037700 Gossypium hirsutum HOM05D005285 ORTHO05D006829 1.2e-171 606.7 361 81.7
Lsat_1_v5_gn_1_109141 Lactuca sativa HOM05D005285 ORTHO05D006829 2.0e-171 605.9 359 80.2
Ciclev10031943m.g Citrus clementina HOM05D005285 ORTHO05D006829 7.5e-171 604.0 353 81.3
Potri.001G271100 Populus trichocarpa HOM05D005285 ORTHO05D006829 7.5e-171 604.0 366 81.1
Hma1.2p1_1011F.1_g247500 Hydrangea macrophylla HOM05D005285 ORTHO05D006829 1.7e-170 602.8 388 76.8
Oeu064272.1 Olea europaea HOM05D005285 ORTHO05D006829 4.9e-170 601.3 356 81.2
TWI09G0675 Tripterygium wilfordii HOM05D005285 ORTHO05D006829 1.4e-169 599.7 360 80.0
Manes.10G147800 Manihot esculenta HOM05D005285 ORTHO05D006829 1.9e-169 599.4 366 79.5
MSTRG.20606 Avicennia marina HOM05D005285 ORTHO05D006829 9.2e-169 597.0 361 80.3
RcHm_v2.0_Chr1g0314801 Rosa chinensis HOM05D005285 ORTHO05D006829 1.6e-168 596.3 353 81.9
TAR636G1692 Trochodendron aralioides HOM05D005285 ORTHO05D006829 2.0e-168 595.9 362 79.3
Nn7g36086 Nelumbo nucifera HOM05D005285 ORTHO05D006829 3.5e-168 595.1 363 78.8
Oeu039102.1 Olea europaea HOM05D005285 ORTHO05D006829 4.6e-168 594.7 358 80.7
SalBow5G3096 Salvia bowleyana HOM05D005285 ORTHO05D006829 7.8e-168 594.0 360 79.2
COL.COLO4_23903 Corchorus olitorius HOM05D005285 ORTHO05D006829 1.0e-167 593.6 364 79.9
SalBow5G3836 Salvia bowleyana HOM05D005285 ORTHO05D006829 1.0e-167 593.6 360 79.2
SGA_v2.0_scaffold646G53323 Striga asiatica HOM05D005285 ORTHO05D006829 1.0e-167 593.6 355 80.6
MD02G1316300 Malus domestica HOM05D005285 ORTHO05D006829 1.3e-167 593.2 352 81.8
ECA248G0026 Erigeron canadensis HOM05D005285 ORTHO05D006829 1.7e-167 592.8 353 79.3
MBI04_g14265_MAGBIO Magnolia biondii HOM05D005285 ORTHO05D006829 3.0e-167 592.0 357 79.3
Eucgr.J01257 Eucalyptus grandis HOM05D005285 ORTHO05D006829 8.6e-167 590.5 364 78.6
EL10Ac2g04308 Beta vulgaris HOM05D005285 ORTHO05D006829 1.5e-166 589.7 351 80.6
CANSAT21G0587 Cannabis sativa HOM05D005285 ORTHO05D006829 1.5e-166 589.7 350 80.9
AUR62023050 Chenopodium quinoa HOM05D005285 ORTHO05D006829 1.9e-166 589.3 353 79.6
MD07G1005600 Malus domestica HOM05D005285 ORTHO05D006829 1.9e-166 589.3 352 81.2
TWI53G0546 Tripterygium wilfordii HOM05D005285 ORTHO05D006829 1.9e-166 589.3 360 78.3
Aqoxy2G00109 Aquilegia oxysepala HOM05D005285 ORTHO05D006829 5.6e-166 587.8 360 76.7
Cfa010729 Carpinus fangiana HOM05D005285 ORTHO05D006829 7.3e-166 587.4 362 79.0
Haze_03242 Corylus avellana HOM05D005285 ORTHO05D006829 9.5e-166 587.0 362 78.7
Phvul.011G213800 Phaseolus vulgaris HOM05D005285 ORTHO05D006829 9.5e-166 587.0 352 80.1
Aa31LG11G7560 Aethionema arabicum HOM05D005285 ORTHO05D006829 1.2e-165 586.6 360 79.7
Cpa.g.sc234.2 Carica papaya HOM05D005285 ORTHO05D006829 6.2e-165 584.3 362 77.9
ClCG10G012540 Citrullus lanatus HOM05D005285 ORTHO05D006829 6.2e-165 584.3 360 78.1
QL04p004838 Quercus lobata HOM05D005285 ORTHO05D006829 6.2e-165 584.3 357 79.0
VMungo1127G2059 Vigna mungo HOM05D005285 ORTHO05D006829 6.2e-165 584.3 352 80.4
MELO3C023957.2 Cucumis melo HOM05D005285 ORTHO05D006829 1.1e-164 583.6 359 78.6
PSO339G1127 Papaver somniferum HOM05D005285 ORTHO05D006829 1.4e-164 583.2 364 76.1
Glyma.12G239400 Glycine max HOM05D005285 ORTHO05D006829 1.8e-164 582.8 352 79.8
Sed0014745 Sechium edule HOM05D005285 ORTHO05D006829 1.8e-164 582.8 360 77.5
AL8G20280 Arabidopsis lyrata HOM05D005285 ORTHO05D006829 2.3e-164 582.4 353 80.2
Hund03676 Selenicereus undatus HOM05D005285 ORTHO05D006829 2.3e-164 582.4 349 79.7
Psat4g195080 Pisum sativum HOM05D005285 ORTHO05D006829 5.2e-164 581.3 350 79.4
Sp2g18470 Schrenkiella parvula HOM05D005285 ORTHO05D006829 8.9e-164 580.5 354 80.2
Lalb_Chr03g0033921 Lupinus albus HOM05D005285 ORTHO05D006829 2.0e-163 579.3 356 78.4
CsaV3_3G032330 Cucumis sativus L. HOM05D005285 ORTHO05D006829 3.4e-163 578.6 359 77.4
Thhalv10004473m.g Eutrema salsugineum HOM05D005285 ORTHO05D006829 3.4e-163 578.6 357 79.0
arahy.Tifrunner.gnm1.ann1.DICK3U Arachis hypogaea HOM05D005285 ORTHO05D006829 4.4e-163 578.2 352 77.8
Eucgr.J01254 Eucalyptus grandis HOM05D005285 ORTHO05D006829 4.4e-163 578.2 364 76.4
PSO384G1382 Papaver somniferum HOM05D005285 ORTHO05D006829 4.4e-163 578.2 364 75.5
Eucgr.J01253 Eucalyptus grandis HOM05D005285 ORTHO05D006829 5.8e-163 577.8 364 76.1
Eucgr.J01256 Eucalyptus grandis HOM05D005285 ORTHO05D006829 5.8e-163 577.8 364 76.1
AT5G48020 Arabidopsis thaliana HOM05D005285 ORTHO05D006829 7.5e-163 577.4 354 78.2
Carub.0008s0757 Capsella rubella HOM05D005285 ORTHO05D006829 7.5e-163 577.4 353 79.6
THA.LOC104819060 Tarenaya hassleriana HOM05D005285 ORTHO05D006829 7.5e-163 577.4 360 78.1
A06p39410 Brassica napus HOM05D005285 ORTHO05D006829 1.3e-162 576.6 358 79.1
BraA06t26856Z Brassica rapa HOM05D005285 ORTHO05D006829 1.3e-162 576.6 358 79.1
Lj3g0011351 Lotus japonicus HOM05D005285 ORTHO05D006829 2.2e-162 575.9 352 78.4
unitig_26.g9596 Utricularia gibba HOM05D005285 ORTHO05D006829 2.9e-162 575.5 355 78.3
Hund03675 Selenicereus undatus HOM05D005285 ORTHO05D006829 1.1e-161 573.5 382 73.3
BcaC06g30830 Brassica carinata HOM05D005285 ORTHO05D006829 3.2e-161 572.0 358 78.2
FAN01G1198 Fragaria x ananassa HOM05D005285 ORTHO05D006829 5.4e-161 571.2 445 66.1
CARHR184290 Cardamine hirsuta HOM05D005285 ORTHO05D006829 2.1e-160 569.3 353 77.6
Medtr8g036165 Medicago truncatula HOM05D005285 ORTHO05D006829 7.8e-160 567.4 352 77.3
Ca_23856_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 1.0e-159 567.0 352 77.6
BolC7t44405H Brassica oleracea HOM05D005285 ORTHO05D006829 1.7e-159 566.2 358 77.7
C07p38860 Brassica napus HOM05D005285 ORTHO05D006829 6.6e-159 564.3 358 77.7
vmacro21170 Vaccinium macrocarpon HOM05D005285 ORTHO05D006829 2.5e-158 562.4 415 68.7
CDE04G1667 Ceratophyllum demersum HOM05D005285 ORTHO05D006829 3.3e-158 562.0 365 72.6
Lj9C629T1 Lonicera japonica HOM05D005285 ORTHO05D006829 7.3e-158 560.8 352 76.1
Sabra16G0166500 Salix brachista HOM05D005285 ORTHO05D006829 7.3e-158 560.8 437 67.3
Os02g0717500 Oryza sativa ssp. japonica HOM05D005285 ORTHO05D006829 3.1e-156 555.4 357 73.9
SGA_v2.0_scaffold646G53324 Striga asiatica HOM05D005285 ORTHO05D006829 1.2e-155 553.5 453 61.8
ATR0605G013 Amborella trichopoda HOM05D005285 ORTHO05D006829 2.6e-155 552.4 367 73.0
Zm00001eb189240 Zea mays HOM05D005285 ORTHO05D006829 3.4e-155 552.0 354 73.7
AUR62009369 Chenopodium quinoa HOM05D005285 ORTHO05D006829 1.1e-150 537.0 328 78.4
Lsat_1_v5_gn_1_111020 Lactuca sativa HOM05D005285 ORTHO05D006829 5.6e-150 534.6 361 70.4
Atru.chr11.2010 Acer truncatum HOM05D005285 ORTHO05D006829 1.8e-148 529.6 348 73.0
SEGI_06931 Sequoiadendron giganteum HOM05D005285 ORTHO05D006829 2.6e-147 525.8 371 69.3
HanXRQChr11g0330581 Helianthus annuus HOM05D005285 ORTHO05D006829 3.4e-147 525.4 361 68.7
ECA248G2079 Erigeron canadensis HOM05D005285 ORTHO05D006829 1.7e-146 523.1 360 68.9
ECA248G2524 Erigeron canadensis HOM05D005285 ORTHO05D006829 2.9e-146 522.3 357 69.2
AagrBONN_evm.TU.Sc2ySwM_228.3236 Anthoceros agrestis HOM05D005285 ORTHO05D006829 9.2e-145 517.3 363 68.0
Atru.chr11.2632 Acer truncatum HOM05D005285 ORTHO05D006829 1.3e-143 513.5 387 69.5
QL04p004878 Quercus lobata HOM05D005285 ORTHO05D006829 3.3e-142 508.8 360 67.5
HanXRQChr11g0330561 Helianthus annuus HOM05D005285 ORTHO05D006829 7.3e-142 507.7 355 67.0
QL04p004868 Quercus lobata HOM05D005285 ORTHO05D006829 6.2e-141 504.6 360 66.9
QL04p004849 Quercus lobata HOM05D005285 ORTHO05D006829 1.2e-136 490.3 362 63.5
SMO364G0792 Selaginella moellendorffii HOM05D005285 ORTHO05D006829 6.0e-136 488.0 350 64.9
Prupe.2G008000 Prunus persica HOM05D005285 ORTHO05D006829 6.6e-135 484.6 273 85.7
Mapoly0019s0106 Marchantia polymorpha HOM05D005285 ORTHO05D006829 3.6e-133 478.8 357 63.3
SHI04065 Sapria himalayana HOM05D000259 ORTHO05D000155 2.0e-131 473.0 519 50.3
Prupe.2G008200 Prunus persica HOM05D005285 ORTHO05D006829 1.2e-123 447.2 254 84.3
Sc11g0009350 Simmondsia chinensis HOM05D005285 ORTHO05D006829 4.2e-121 438.7 270 78.1
Pp3c17_23530 Physcomitrium patens HOM05D005285 ORTHO05D006829 5.6e-118 428.3 385 55.6
Sed0008744 Sechium edule HOM05D005285 ORTHO05D006829 2.1e-117 426.4 344 64.8
HPP92_022786 Vanilla planifolia HOM05D005285 ORTHO05D006829 4.6e-112 408.7 273 71.8
Solyc10g037950.2 Solanum lycopersicum HOM05D005285 ORTHO05D006829 9.0e-108 394.4 193 99.5
Ca_24082_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 1.4e-103 380.6 344 53.8
Lsat_1_v5_gn_1_72821 Lactuca sativa HOM05D005285 ORTHO05D006829 3.0e-103 379.4 345 55.4
Cre13.g586400 Chlamydomonas reinhardtii HOM05D005285 ORTHO05D006829 5.0e-98 362.1 373 48.3
Pp3c14_26250 Physcomitrium patens HOM05D005285 ORTHO05D006829 1.1e-94 350.9 255 64.3
Solyc10g037960.3 Solanum lycopersicum HOM05D005285 ORTHO05D006829 1.7e-90 337.0 164 97.6
HanXRQChr11g0330591 Helianthus annuus HOM05D005285 ORTHO05D006829 1.0e-82 311.2 223 66.8
arahy.Tifrunner.gnm1.ann1.A7HRCY Arachis hypogaea HOM05D005285 ORTHO05D006829 1.6e-80 303.9 271 60.1
TPR.G21737 Trifolium pratense HOM05D005285 ORTHO05D006829 4.1e-76 289.3 164 82.9
Eucgr.L03705 Eucalyptus grandis HOM05D005285 ORTHO05D006829 2.7e-75 286.6 179 77.1
HanXRQChr01g0017351 Helianthus annuus HOM05D005285 ORTHO05D006829 1.7e-74 283.9 181 72.9
Ca_24079_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 3.1e-68 263.1 346 44.5
TPR.G21746 Trifolium pratense HOM05D005285 ORTHO05D006829 1.0e-66 258.1 177 68.9
Peaxi162Scf00451g00621 Petunia axillaris HOM05D005285 ORTHO05D006829 8.0e-56 221.9 172 68.6
Cpa.g.sc2760.1 Carica papaya HOM05D005285 ORTHO05D006829 1.8e-55 220.7 174 60.9
Rhsim06G0016300 Rhododendron simsii HOM05D005285 ORTHO05D006829 5.0e-50 202.6 118 83.1
HanXRQChr11g0330601 Helianthus annuus HOM05D005285 ORTHO05D006829 8.3e-45 185.3 106 80.2
Oeu039103.1 Olea europaea HOM05D005285 ORTHO05D008854 2.7e-35 153.7 90 82.2
Actinidia21565 Actinidia chinensis HOM05D005285 ORTHO05D006829 7.8e-35 152.1 107 71.0
Oeu039101.1 Olea europaea HOM05D000288 ORTHO05D000173 6.4e-29 132.5 88 73.9
Atru.ctg794.7 Acer truncatum HOM05D005285 ORTHO05D037890 8.1e-24 115.5 177 41.2
TPR.G13313 Trifolium pratense HOM05D005285 ORTHO05D413460 5.1e-18 96.3 77 58.4
arahy.Tifrunner.gnm1.ann1.J91U4H Arachis hypogaea HOM05D000001 ORTHO05D004533 1.5e-17 94.7 62 66.1
vmacro21176 Vaccinium macrocarpon HOM05D005285 ORTHO05D006829 1.9e-17 94.4 112 50.9
VMungo1127G1344 Vigna mungo HOM05D000839 ORTHO05D000664 1.6e-16 91.3 48 87.5
Lsat_1_v5_gn_0_6420 Lactuca sativa HOM05D002112 ORTHO05D007960 4.8e-16 89.7 78 60.3
Atru.chr13.2215 Acer truncatum HOM05D005285 ORTHO05D037890 6.9e-15 85.9 55 70.9
CDE07G0090 Ceratophyllum demersum HOM05D000288 ORTHO05D000173 1.5e-14 84.7 232 27.6
arahy.Tifrunner.gnm1.ann1.43BKZS Arachis hypogaea HOM05D000001 ORTHO05D000003 2.4e-12 77.4 47 70.2
TPR.G1074 Trifolium pratense HOM05D005285 ORTHO05D411165 3.3e-09 67.0 74 47.3
Dinv21663 Davidia involucrata HOM05D001438 ORTHO05D001336 4.8e-08 63.2 276 24.6
Lsat_1_v5_gn_9_64201 Lactuca sativa HOM05D000310 ORTHO05D005377 1.5e-06 58.2 32 81.2
TPR.G37652 Trifolium pratense HOM05D001438 ORTHO05D001336 2.6e-06 57.4 233 23.6


User provided reference genes

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