Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen10g011390 Solanum pennellii HOM05D004975 ORTHO05D005963 4.0e-34 147.5 73 100.0
PGSC0003DMG400013829 Solanum tuberosum HOM05D004975 ORTHO05D005963 4.4e-25 117.5 62 91.9
Solyc08g065760.3 Solanum lycopersicum HOM05D004975 ORTHO05D005963 1.3e-24 115.9 61 91.8
Sopen10g033590 Solanum pennellii HOM05D004975 ORTHO05D005963 1.3e-24 115.9 61 91.8
Sopen08g019440 Solanum pennellii HOM05D004975 ORTHO05D005963 1.1e-23 112.8 61 88.5
Peaxi162Scf00105g00510 Petunia axillaris HOM05D004975 ORTHO05D005963 7.0e-23 110.2 61 85.2
Nitab4.5_0000250g0160 Nicotiana tabacum HOM05D004975 ORTHO05D005963 2.7e-22 108.2 61 83.6
Nitab4.5_0002393g0070 Nicotiana tabacum HOM05D004975 ORTHO05D005963 2.7e-22 108.2 61 83.6
Actinidia13302 Actinidia chinensis HOM05D004975 ORTHO05D005963 9.5e-20 99.8 59 79.7
Actinidia13417 Actinidia chinensis HOM05D004975 ORTHO05D005963 4.7e-19 97.4 59 78.0
Haze_21744 Corylus avellana HOM05D004975 ORTHO05D005963 4.7e-19 97.4 59 72.9
CiPaw.01G062200 Carya illinoinensis HOM05D004975 ORTHO05D005963 1.0e-18 96.3 59 71.2
CiPaw.08G019900 Carya illinoinensis HOM05D004975 ORTHO05D005963 1.0e-18 96.3 59 71.2
CSS0002597 Camellia sinensis var. sinensis HOM05D004975 ORTHO05D005963 1.8e-18 95.5 59 76.3
ECA248G0122 Erigeron canadensis HOM05D004975 ORTHO05D005963 2.3e-18 95.1 64 70.3
DCAR_007697 Daucus carota HOM05D004975 ORTHO05D005963 5.2e-18 94.0 60 71.7
Rhsim04G0150100 Rhododendron simsii HOM05D004975 ORTHO05D005963 5.2e-18 94.0 58 75.9
Migut.A00251 Erythranthe guttata HOM05D004975 ORTHO05D005963 1.2e-17 92.8 59 74.6
Atru.chr7.2646 Acer truncatum HOM05D004975 ORTHO05D005963 1.5e-17 92.4 59 69.5
Ciclev10009422m.g Citrus clementina HOM05D004975 ORTHO05D005963 1.5e-17 92.4 59 69.5
ECA248G2823 Erigeron canadensis HOM05D004975 ORTHO05D005963 1.5e-17 92.4 64 70.3
Lsat_1_v5_gn_1_49060 Lactuca sativa HOM05D004975 ORTHO05D005963 1.5e-17 92.4 59 72.9
Dinv30242 Davidia involucrata HOM05D004975 ORTHO05D005963 2.6e-17 91.7 59 72.9
Hma1.2p1_0140F.1_g063690 Hydrangea macrophylla HOM05D004975 ORTHO05D005963 2.6e-17 91.7 59 71.2
SGA_v2.0_scaffold229G43318 Striga asiatica HOM05D004975 ORTHO05D005963 2.6e-17 91.7 64 70.3
SGA_v2.0_scaffold27G11528 Striga asiatica HOM05D004975 ORTHO05D005963 2.6e-17 91.7 64 70.3
Sabra18G0014600 Salix brachista HOM05D004975 ORTHO05D005963 5.7e-17 90.5 62 67.7
Cc08_g08560 Coffea canephora HOM05D004975 ORTHO05D005963 9.8e-17 89.7 64 67.2
Potri.018G006900 Populus trichocarpa HOM05D004975 ORTHO05D005963 9.8e-17 89.7 64 65.6
QL12p025158 Quercus lobata HOM05D004975 ORTHO05D005963 1.3e-16 89.4 59 69.5
PGR044G1665 Punica granatum HOM05D004975 ORTHO05D005963 1.1e-15 86.3 64 64.1
ClCG10G000990 Citrullus lanatus HOM05D004975 ORTHO05D005963 1.4e-15 85.9 64 65.6
Duzib187G1289 Durio zibethinus HOM05D004975 ORTHO05D005963 1.8e-15 85.5 59 64.4
THA.LOC104803875 Tarenaya hassleriana HOM05D004975 ORTHO05D005963 1.8e-15 85.5 59 66.1
Thecc.09G007400 Theobroma cacao HOM05D004975 ORTHO05D005963 1.8e-15 85.5 64 62.5
MSTRG.11721 Avicennia marina HOM05D004975 ORTHO05D005963 2.4e-15 85.1 59 67.8
HanXRQChr01g0029381 Helianthus annuus HOM05D004975 ORTHO05D005963 2.4e-15 85.1 59 67.8
HanXRQChr11g0341541 Helianthus annuus HOM05D004975 ORTHO05D005963 2.4e-15 85.1 59 67.8
TWI34G1428 Tripterygium wilfordii HOM05D004975 ORTHO05D005963 5.4e-15 84.0 59 64.4
CsaV3_3G001030 Cucumis sativus L. HOM05D004975 ORTHO05D005963 7.0e-15 83.6 59 66.1
Eucgr.H01931 Eucalyptus grandis HOM05D004975 ORTHO05D005963 7.0e-15 83.6 64 60.9
unitig_46.g18530 Utricularia gibba HOM05D004975 ORTHO05D005963 7.0e-15 83.6 64 59.4
Gohir.A07G060900 Gossypium hirsutum HOM05D004975 ORTHO05D005963 1.2e-14 82.8 64 60.9
Gorai.001G069100 Gossypium raimondii HOM05D004975 ORTHO05D005963 1.2e-14 82.8 64 60.9
COL.COLO4_19031 Corchorus olitorius HOM05D004975 ORTHO05D005963 2.0e-14 82.0 59 62.7
Manes.17G086700 Manihot esculenta HOM05D004975 ORTHO05D005963 2.7e-14 81.6 59 64.4
Psat6g036480 Pisum sativum HOM05D004975 ORTHO05D005963 2.7e-14 81.6 59 67.8
TAR625G0147 Trochodendron aralioides HOM05D004975 ORTHO05D005963 2.7e-14 81.6 59 62.7
Sed0019969 Sechium edule HOM05D004975 ORTHO05D005963 3.5e-14 81.3 59 62.7
TPR.G24523 Trifolium pratense HOM05D004975 ORTHO05D005963 3.5e-14 81.3 59 66.1
arahy.Tifrunner.gnm1.ann1.1NF0KF Arachis hypogaea HOM05D004975 ORTHO05D005963 4.6e-14 80.9 59 66.1
MELO3C013792.2 Cucumis melo HOM05D004975 ORTHO05D005963 5.9e-14 80.5 59 66.1
SHI04272 Sapria himalayana HOM05D004975 ORTHO05D005963 5.9e-14 80.5 59 62.7
Carub.0007s0909 Capsella rubella HOM05D004975 ORTHO05D005963 7.8e-14 80.1 59 62.7
Lj3g0002799 Lotus japonicus HOM05D004975 ORTHO05D005963 7.8e-14 80.1 59 62.7
Cpa.g.sc6.221 Carica papaya HOM05D004975 ORTHO05D005963 1.0e-13 79.7 64 59.4
Lj3g0015990 Lotus japonicus HOM05D004975 ORTHO05D005963 1.0e-13 79.7 59 62.7
TAR383G0773 Trochodendron aralioides HOM05D004975 ORTHO05D005963 1.3e-13 79.3 59 61.0
TAR383G0873 Trochodendron aralioides HOM05D004975 ORTHO05D005963 1.3e-13 79.3 59 61.0
arahy.Tifrunner.gnm1.ann1.GL41SS Arachis hypogaea HOM05D004975 ORTHO05D005963 1.7e-13 79.0 59 66.1
Sc24g0001980 Simmondsia chinensis HOM05D004975 ORTHO05D005963 1.7e-13 79.0 59 67.8
AL7G20600 Arabidopsis lyrata HOM05D004975 ORTHO05D005963 2.3e-13 78.6 59 61.0
AT4G31460 Arabidopsis thaliana HOM05D004975 ORTHO05D005963 2.3e-13 78.6 59 61.0
arahy.Tifrunner.gnm1.ann1.KS8K1P Arachis hypogaea HOM05D004975 ORTHO05D005963 2.3e-13 78.6 59 64.4
Duzib168G2230 Durio zibethinus HOM05D004975 ORTHO05D005963 2.3e-13 78.6 59 62.7
Thhalv10026230m.g Eutrema salsugineum HOM05D004975 ORTHO05D005963 2.9e-13 78.2 59 62.7
Gohir.D07G065600 Gossypium hirsutum HOM05D004975 ORTHO05D005963 2.9e-13 78.2 58 62.1
TWI63G0658 Tripterygium wilfordii HOM05D004975 ORTHO05D005963 2.9e-13 78.2 59 61.0
A01p06810 Brassica napus HOM05D004975 ORTHO05D005963 3.9e-13 77.8 59 62.7
BraA01t00633Z Brassica rapa HOM05D004975 ORTHO05D005963 3.9e-13 77.8 59 62.7
Lalb_Chr18g0045061 Lupinus albus HOM05D004975 ORTHO05D005963 3.9e-13 77.8 59 66.1
Hund22233 Selenicereus undatus HOM05D004975 ORTHO05D005963 3.9e-13 77.8 58 65.5
Aa31LG2G18860 Aethionema arabicum HOM05D004975 ORTHO05D005963 5.0e-13 77.4 59 61.0
BcaB03g12697 Brassica carinata HOM05D004975 ORTHO05D005963 5.0e-13 77.4 59 61.0
BcaC09g51928 Brassica carinata HOM05D004975 ORTHO05D005963 5.0e-13 77.4 59 61.0
BcaNung04586 Brassica carinata HOM05D004975 ORTHO05D005963 5.0e-13 77.4 59 61.0
A08p18600 Brassica napus HOM05D004975 ORTHO05D005963 5.0e-13 77.4 59 61.0
C01p07550 Brassica napus HOM05D004975 ORTHO05D005963 5.0e-13 77.4 59 61.0
BolC1t00736H Brassica oleracea HOM05D004975 ORTHO05D005963 5.0e-13 77.4 59 61.0
BraA08t33823Z Brassica rapa HOM05D004975 ORTHO05D005963 5.0e-13 77.4 59 61.0
CANSAT64G0033 Cannabis sativa HOM05D004975 ORTHO05D005963 6.6e-13 77.0 59 64.4
Hund06848 Selenicereus undatus HOM05D004975 ORTHO05D005963 6.6e-13 77.0 58 65.5
Phvul.011G072600 Phaseolus vulgaris HOM05D004975 ORTHO05D005963 8.6e-13 76.6 59 62.7
Aqoxy7G00181 Aquilegia oxysepala HOM05D004975 ORTHO05D005963 1.1e-12 76.3 59 62.7
Sp7g29320 Schrenkiella parvula HOM05D004975 ORTHO05D005963 1.1e-12 76.3 59 61.0
EL10Ac2g04836 Beta vulgaris HOM05D004975 ORTHO05D005963 1.5e-12 75.9 58 63.8
EL10Ac4g08846 Beta vulgaris HOM05D004975 ORTHO05D005963 1.5e-12 75.9 58 63.8
BcaC01g01087 Brassica carinata HOM05D004975 ORTHO05D005963 1.5e-12 75.9 59 61.0
C03p87960 Brassica napus HOM05D004975 ORTHO05D005963 1.5e-12 75.9 59 61.0
BolC3t21107H Brassica oleracea HOM05D004975 ORTHO05D005963 1.5e-12 75.9 59 61.0
VMungo1127G2243 Vigna mungo HOM05D004975 ORTHO05D005963 1.5e-12 75.9 59 64.4
CANSAT25G3538 Cannabis sativa HOM05D004975 ORTHO05D005963 1.9e-12 75.5 59 62.7
CARHR239350 Cardamine hirsuta HOM05D004975 ORTHO05D005963 1.9e-12 75.5 59 55.9
AUR62027459 Chenopodium quinoa HOM05D004975 ORTHO05D005963 1.9e-12 75.5 58 62.1
Ca_12771_v3 Cicer arietinum L. HOM05D004975 ORTHO05D005963 1.9e-12 75.5 59 61.0
Ah.06g191340 Amaranthus hybridus HOM05D004975 ORTHO05D005963 2.5e-12 75.1 58 60.3
Glyma.12G071700 Glycine max HOM05D004975 ORTHO05D005963 2.5e-12 75.1 59 59.3
ATR0580G184 Amborella trichopoda HOM05D004975 ORTHO05D005963 3.3e-12 74.7 59 62.7
Glyma.11G153169 Glycine max HOM05D004975 ORTHO05D005963 5.6e-12 73.9 59 57.6
Medtr1g007480 Medicago truncatula HOM05D004975 ORTHO05D005963 5.6e-12 73.9 59 61.0
BcaC01g01097 Brassica carinata HOM05D004975 ORTHO05D005963 7.3e-12 73.6 59 59.3
C03p88060 Brassica napus HOM05D004975 ORTHO05D005963 7.3e-12 73.6 59 59.3
CDE02G4585 Ceratophyllum demersum HOM05D004975 ORTHO05D005963 3.6e-11 71.2 59 54.2
GSVIVG01009932001 Vitis vinifera HOM05D004975 ORTHO05D005963 4.7e-11 70.9 64 57.8
HPP92_011116 Vanilla planifolia HOM05D004975 ORTHO05D005963 6.1e-11 70.5 64 50.0
Os07g0544900 Oryza sativa ssp. japonica HOM05D004975 ORTHO05D005963 8.0e-11 70.1 59 52.5
MBI16_g41808_MAGBIO Magnolia biondii HOM05D004975 ORTHO05D005963 1.0e-10 69.7 59 50.8
Zm00001eb323470 Zea mays HOM05D004975 ORTHO05D005963 1.8e-10 68.9 64 50.0
FvH4_2g36661 Fragaria vesca HOM05D004975 ORTHO05D005963 2.3e-10 68.6 60 58.3
FAN20G1154 Fragaria x ananassa HOM05D007251 ORTHO05D009266 2.3e-10 68.6 60 58.3
Zm00001eb106440 Zea mays HOM05D004975 ORTHO05D005963 3.1e-10 68.2 64 48.4
RcHm_v2.0_Chr6g0305011 Rosa chinensis HOM05D004975 ORTHO05D005963 5.2e-10 67.4 60 58.3
CDE05G0021 Ceratophyllum demersum HOM05D004975 ORTHO05D005963 1.5e-09 65.9 59 50.8
SEGI_29047 Sequoiadendron giganteum HOM05D004975 ORTHO05D005963 1.3e-08 62.8 59 50.8
PSO063G2087 Papaver somniferum HOM05D004975 ORTHO05D005963 2.9e-08 61.6 58 51.7
PSO170G1562 Papaver somniferum HOM05D004975 ORTHO05D005963 2.9e-08 61.6 58 51.7
PSO063G4606 Papaver somniferum HOM05D004975 ORTHO05D005963 1.4e-07 59.3 58 50.0
arahy.Tifrunner.gnm1.ann1.57HDZK Arachis hypogaea HOM05D004975 ORTHO05D005963 3.2e-07 58.2 59 54.2
PSO782G1312 Papaver somniferum HOM05D004975 ORTHO05D005963 7.0e-07 57.0 58 46.6
Solyc10g038060.2 Solanum lycopersicum HOM05D004975 ORTHO05D005963 3.5e-06 54.7 28 89.3
SMO367G1088 Selaginella moellendorffii HOM05D004975 ORTHO05D005963 4.6e-06 54.3 29 82.8
HPP92_011121 Vanilla planifolia HOM05D004975 ORTHO05D005963 4.6e-06 54.3 40 60.0


User provided reference genes

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