Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen10g009620 Solanum pennellii HOM05D007511 ORTHO05D025904 4.3e-67 258.1 150 100.0
Solyc10g024480.1 Solanum lycopersicum HOM05D007511 ORTHO05D003753 4.1e-62 241.5 150 94.7
PGSC0003DMG400043768 Solanum tuberosum HOM05D007511 ORTHO05D003753 2.1e-26 122.9 144 50.7
Peaxi162Scf00245g00034 Petunia axillaris HOM05D030085 ORTHO05D025904 6.2e-26 121.3 124 59.7
Sopen01g032800 Solanum pennellii HOM05D007511 ORTHO05D003753 8.2e-26 120.9 144 50.0
Peaxi162Scf01343g00114 Petunia axillaris HOM05D007511 ORTHO05D003753 5.3e-25 118.2 160 46.9
Nitab4.5_0004800g0110 Nicotiana tabacum HOM05D000001 ORTHO05D011953 6.9e-25 117.9 152 49.3
Oeu032775.1 Olea europaea HOM05D007511 ORTHO05D003753 3.5e-21 105.5 144 43.8
Oeu024951.1 Olea europaea HOM05D007511 ORTHO05D003753 4.6e-21 105.1 144 43.8
Migut.B01440 Erythranthe guttata HOM05D007511 ORTHO05D003753 6.7e-20 101.3 88 51.1
vmacro13587 Vaccinium macrocarpon HOM05D007511 ORTHO05D003753 3.3e-19 99.0 151 41.7
CSS0038510 Camellia sinensis var. sinensis HOM05D007511 ORTHO05D003753 2.8e-18 95.9 151 41.7
HanXRQChr04g0119711 Helianthus annuus HOM05D007511 ORTHO05D003753 2.4e-17 92.8 68 63.2
Hma1.2p1_0915F.1_g236420 Hydrangea macrophylla HOM05D007511 ORTHO05D003753 2.4e-17 92.8 161 47.8
SGA_v2.0_scaffold5G03086 Striga asiatica HOM05D007511 ORTHO05D003753 3.4e-16 89.0 87 50.6
SGA_v2.0_scaffold95G28750 Striga asiatica HOM05D007511 ORTHO05D003753 4.5e-16 88.6 91 50.5
Lsat_1_v5_gn_7_35641 Lactuca sativa HOM05D007511 ORTHO05D003753 7.6e-16 87.8 85 51.8
Hma1.2p1_0353F.1_g133330 Hydrangea macrophylla HOM05D007511 ORTHO05D003753 1.7e-15 86.7 83 53.0
PGSC0003DMG400021850 Solanum tuberosum HOM05D030085 ORTHO05D025904 1.4e-14 83.6 77 72.7
SalBow4G0080 Salvia bowleyana HOM05D007511 ORTHO05D003753 7.2e-14 81.3 68 55.9
SalBow4G2364 Salvia bowleyana HOM05D007511 ORTHO05D003753 7.2e-14 81.3 68 55.9
Migut.N01683 Erythranthe guttata HOM05D007511 ORTHO05D003753 9.3e-14 80.9 68 55.9
CiPaw.02G046500 Carya illinoinensis HOM05D007511 ORTHO05D003753 1.6e-13 80.1 82 46.3
Rhsim07G0046200 Rhododendron simsii HOM05D007511 ORTHO05D003753 1.6e-13 80.1 87 50.6
Duzib128G1432 Durio zibethinus HOM05D007511 ORTHO05D003753 2.3e-12 76.3 93 46.2
RcHm_v2.0_Chr1g0337051 Rosa chinensis HOM05D007511 ORTHO05D003753 1.9e-11 73.2 81 44.4
Prupe.2G098000 Prunus persica HOM05D007511 ORTHO05D003753 7.4e-11 71.2 93 36.6
Sed0019168 Sechium edule HOM05D007511 ORTHO05D003753 9.7e-11 70.9 84 41.7
PSO063G5504 Papaver somniferum HOM05D007511 ORTHO05D003753 2.8e-10 69.3 79 41.8
Rhsim01G0134200 Rhododendron simsii HOM05D007511 ORTHO05D003753 3.7e-10 68.9 74 52.7
Atru.chr2.1724 Acer truncatum HOM05D007511 ORTHO05D003753 4.8e-10 68.6 66 47.0
Cpa.g.sc73.86 Carica papaya HOM05D007511 ORTHO05D003753 4.8e-10 68.6 69 40.6
MD07G1077000 Malus domestica HOM05D007511 ORTHO05D003753 4.8e-10 68.6 94 36.2
FAN10G2279 Fragaria x ananassa HOM05D001937 ORTHO05D007024 8.2e-10 67.8 69 44.9
Gohir.D11G235550 Gossypium hirsutum HOM05D007511 ORTHO05D003753 8.2e-10 67.8 82 37.8
MD02G1239600 Malus domestica HOM05D007511 ORTHO05D003753 8.2e-10 67.8 68 44.1
PSO782G3115 Papaver somniferum HOM05D007511 ORTHO05D003753 8.2e-10 67.8 79 40.5
CAN.G992.2 Capsicum annuum HOM05D007511 ORTHO05D003753 1.4e-09 67.0 50 62.0
CsaV3_2G011030 Cucumis sativus L. HOM05D007511 ORTHO05D003753 1.4e-09 67.0 165 38.2
THA.LOC104802898 Tarenaya hassleriana HOM05D007511 ORTHO05D003753 1.4e-09 67.0 68 45.6
Rhsim01G0134700 Rhododendron simsii HOM05D000002 ORTHO05D000001 1.8e-09 66.6 66 53.0
Cfa000931 Carpinus fangiana HOM05D007511 ORTHO05D003753 2.4e-09 66.2 82 40.2
FAN01G1810 Fragaria x ananassa HOM05D007511 ORTHO05D003753 2.4e-09 66.2 68 44.1
FvH4_7g07110 Fragaria vesca HOM05D007511 ORTHO05D003753 3.1e-09 65.9 68 44.1
FAN06G3938 Fragaria x ananassa HOM05D007511 ORTHO05D003753 3.1e-09 65.9 68 44.1
FAN03G1709 Fragaria x ananassa HOM05D007511 ORTHO05D003753 5.3e-09 65.1 68 42.6
Gorai.007G248300 Gossypium raimondii HOM05D007511 ORTHO05D003753 1.2e-08 63.9 82 36.6
Nitab4.5_0012200g0020 Nicotiana tabacum HOM05D030085 ORTHO05D025904 1.5e-08 63.5 76 57.9
Sabra19G0054300 Salix brachista HOM05D007511 ORTHO05D003753 2.6e-08 62.8 68 44.1
PGR004G1271 Punica granatum HOM05D007511 ORTHO05D003753 3.4e-08 62.4 65 49.2
Gohir.A11G221900 Gossypium hirsutum HOM05D007511 ORTHO05D003753 4.5e-08 62.0 82 35.4
Manes.08G158000 Manihot esculenta HOM05D007511 ORTHO05D003753 4.5e-08 62.0 88 36.4
TWI60G1247 Tripterygium wilfordii HOM05D007511 ORTHO05D003753 4.5e-08 62.0 66 40.9
Aa31LG11G12060 Aethionema arabicum HOM05D007511 ORTHO05D003753 5.9e-08 61.6 77 39.0
Thhalv10015688m.g Eutrema salsugineum HOM05D007511 ORTHO05D003753 5.9e-08 61.6 80 36.2
C02p09200 Brassica napus HOM05D007511 ORTHO05D003753 7.7e-08 61.2 80 40.0
Nn1g09148 Nelumbo nucifera HOM05D007511 ORTHO05D003753 1.3e-07 60.5 81 34.6
Nitab4.5_0000050g0100 Nicotiana tabacum HOM05D030085 ORTHO05D025904 1.3e-07 60.5 78 55.1
Sp6g26630 Schrenkiella parvula HOM05D007511 ORTHO05D003753 1.7e-07 60.1 73 37.0
TWI34G0987 Tripterygium wilfordii HOM05D007511 ORTHO05D003753 1.7e-07 60.1 66 40.9
AL6G28680 Arabidopsis lyrata HOM05D007511 ORTHO05D003753 2.9e-07 59.3 66 40.9
TAR629G3237 Trochodendron aralioides HOM05D007511 ORTHO05D003753 2.9e-07 59.3 69 42.0
BcaC03g13529 Brassica carinata HOM05D007511 ORTHO05D003753 3.8e-07 58.9 73 38.4
A02p04350 Brassica napus HOM05D007511 ORTHO05D003753 3.8e-07 58.9 73 38.4
BolC2t06828H Brassica oleracea HOM05D007511 ORTHO05D003753 3.8e-07 58.9 73 38.4
BraA02t05399Z Brassica rapa HOM05D007511 ORTHO05D003753 3.8e-07 58.9 73 38.4
AT5G17590 Arabidopsis thaliana HOM05D007511 ORTHO05D003753 6.5e-07 58.2 81 39.5
Psat0s409g0080 Pisum sativum HOM05D007511 ORTHO05D003753 6.5e-07 58.2 67 40.3
Aqoxy5G00551 Aquilegia oxysepala HOM05D007511 ORTHO05D003753 8.5e-07 57.8 88 36.4
Ciclev10033674m.g Citrus clementina HOM05D007511 ORTHO05D003753 8.5e-07 57.8 66 45.5
Duzib177G0499 Durio zibethinus HOM05D007511 ORTHO05D003753 1.1e-06 57.4 90 34.4
CARHR195590 Cardamine hirsuta HOM05D007511 ORTHO05D003753 1.4e-06 57.0 80 33.8
Medtr8g011160 Medicago truncatula HOM05D007511 ORTHO05D003753 1.9e-06 56.6 68 41.2
Carub.0006s1583 Capsella rubella HOM05D007511 ORTHO05D003753 2.5e-06 56.2 80 33.8
Nn3g19224 Nelumbo nucifera HOM05D007511 ORTHO05D003753 2.5e-06 56.2 69 37.7
Eucgr.D00980 Eucalyptus grandis HOM05D007511 ORTHO05D003753 4.2e-06 55.5 64 45.3
Potri.019G043701 Populus trichocarpa HOM05D007511 ORTHO05D003753 4.2e-06 55.5 68 39.7
Sc16g0009500 Simmondsia chinensis HOM05D001418 ORTHO05D003753 4.2e-06 55.5 71 39.4
CDE02G0326 Ceratophyllum demersum HOM05D007511 ORTHO05D003753 9.4e-06 54.3 83 39.8
Ca_23172_v3 Cicer arietinum L. HOM05D007511 ORTHO05D003753 9.4e-06 54.3 68 38.2


User provided reference genes

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