Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen10g008970 Solanum pennellii HOM05D004546 ORTHO05D005419 2.5e-219 765.4 454 100.0
PGSC0003DMG400010002 Solanum tuberosum HOM05D004546 ORTHO05D005419 1.8e-209 732.6 449 88.0
Solyc10g019040.2 Solanum lycopersicum HOM05D004546 ORTHO05D005419 7.5e-208 727.2 454 96.0
CAN.G1330.18 Capsicum annuum HOM05D004546 ORTHO05D005419 2.3e-164 582.8 449 78.0
Nitab4.5_0000753g0130 Nicotiana tabacum HOM05D004546 ORTHO05D005419 7.2e-150 534.6 424 69.1
Nitab4.5_0003652g0050 Nicotiana tabacum HOM05D004546 ORTHO05D005419 4.6e-149 531.9 424 68.9
Hma1.2p1_1482F.1_g286200 Hydrangea macrophylla HOM05D004546 ORTHO05D005419 4.5e-144 515.4 444 61.7
Peaxi162Scf00152g01427 Petunia axillaris HOM05D004546 ORTHO05D005419 7.2e-142 508.1 436 68.3
CSS0049092 Camellia sinensis var. sinensis HOM05D004546 ORTHO05D005419 9.1e-137 491.1 414 63.0
vmacro01757 Vaccinium macrocarpon HOM05D004546 ORTHO05D005419 5.9e-136 488.4 437 59.0
Rhsim09G0016100 Rhododendron simsii HOM05D004546 ORTHO05D005419 1.7e-130 470.3 425 59.5
Cfa005513 Carpinus fangiana HOM05D004546 ORTHO05D005419 8.2e-130 468.0 438 56.8
Rhsim11G0128800 Rhododendron simsii HOM05D004546 ORTHO05D005419 7.0e-129 464.9 438 58.2
Dinv24291 Davidia involucrata HOM05D004546 ORTHO05D005419 5.0e-127 458.8 442 61.3
GSVIVG01035964001 Vitis vinifera HOM05D004546 ORTHO05D005419 5.0e-127 458.8 442 56.8
Lalb_Chr12g0204461 Lupinus albus HOM05D004546 ORTHO05D005419 4.8e-122 442.2 434 54.6
Duzib177G0829 Durio zibethinus HOM05D004546 ORTHO05D005419 1.7e-119 433.7 438 53.2
Thecc.05G227600 Theobroma cacao HOM05D004546 ORTHO05D005419 1.7e-119 433.7 438 53.2
Migut.B00830 Erythranthe guttata HOM05D004546 ORTHO05D005419 5.0e-119 432.2 447 53.2
DCAR_006706 Daucus carota HOM05D004546 ORTHO05D005419 9.4e-118 427.9 446 52.9
CiPaw.05G045000 Carya illinoinensis HOM05D004546 ORTHO05D005419 1.2e-117 427.6 362 61.3
Potri.007G116200 Populus trichocarpa HOM05D004546 ORTHO05D005419 2.1e-117 426.8 437 55.6
Potri.017G043000 Populus trichocarpa HOM05D004546 ORTHO05D005419 2.7e-117 426.4 437 53.3
TAR628G0514 Trochodendron aralioides HOM05D004546 ORTHO05D005419 2.7e-117 426.4 360 61.9
MSTRG.16518 Avicennia marina HOM05D004546 ORTHO05D005419 4.7e-117 425.6 450 51.8
Prupe.1G570900 Prunus persica HOM05D004546 ORTHO05D005419 1.4e-116 424.1 438 53.4
Peaxi162Scf00152g01529 Petunia axillaris HOM05D004546 ORTHO05D005419 6.8e-116 421.8 448 60.5
Haze_01703 Corylus avellana HOM05D004546 ORTHO05D005419 4.4e-115 419.1 543 46.4
Sabra17G0029200 Salix brachista HOM05D004546 ORTHO05D005419 4.4e-115 419.1 454 51.8
QL02p098920 Quercus lobata HOM05D004546 ORTHO05D005419 1.7e-114 417.2 444 56.8
Actinidia00204 Actinidia chinensis HOM05D004546 ORTHO05D005419 4.1e-113 412.5 442 53.4
ECA234G1828 Erigeron canadensis HOM05D004546 ORTHO05D005419 7.0e-113 411.8 441 50.1
Lj5A252T47 Lonicera japonica HOM05D004546 ORTHO05D005419 1.2e-112 411.0 443 56.4
Cc02_g22580 Coffea canephora HOM05D004546 ORTHO05D005419 4.5e-112 409.1 449 49.7
CsaV3_5G025650 Cucumis sativus L. HOM05D004546 ORTHO05D005419 1.0e-111 407.9 437 49.7
Sed0013794 Sechium edule HOM05D004546 ORTHO05D005419 1.7e-111 407.1 437 49.4
Phvul.002G249700 Phaseolus vulgaris HOM05D004546 ORTHO05D005419 1.5e-110 404.1 453 47.7
Gorai.001G269700 Gossypium raimondii HOM05D004546 ORTHO05D005419 1.2e-109 401.0 438 50.9
Atru.chr8.1488 Acer truncatum HOM05D004546 ORTHO05D005419 1.0e-108 397.9 433 51.0
Glyma.05G169000 Glycine max HOM05D004546 ORTHO05D005419 5.2e-108 395.6 433 51.5
SHI16664 Sapria himalayana HOM05D004546 ORTHO05D005419 6.8e-108 395.2 449 49.0
Sc11g0004500 Simmondsia chinensis HOM05D004546 ORTHO05D005419 6.8e-108 395.2 440 47.5
THA.LOC104809617 Tarenaya hassleriana HOM05D004546 ORTHO05D005419 2.8e-106 389.8 438 48.2
MD08G1233000 Malus domestica HOM05D004546 ORTHO05D005419 6.3e-106 388.7 437 53.8
PSO210G6794 Papaver somniferum HOM05D004546 ORTHO05D005419 8.3e-106 388.3 439 47.6
Rhsim09G0048700 Rhododendron simsii HOM05D004546 ORTHO05D005419 8.3e-106 388.3 313 65.8
Ciclev10015244m.g Citrus clementina HOM05D004546 ORTHO05D005419 1.4e-105 387.5 362 56.6
PSO210G7371 Papaver somniferum HOM05D004546 ORTHO05D005419 4.1e-105 386.0 439 47.6
ClCG03G000010 Citrullus lanatus HOM05D004546 ORTHO05D005419 7.0e-105 385.2 485 44.7
VMungo0251G0798 Vigna mungo HOM05D004546 ORTHO05D005419 9.2e-105 384.8 464 45.5
CANSAT54G1257 Cannabis sativa HOM05D004546 ORTHO05D005419 2.0e-104 383.6 362 59.7
Manes.10G066500 Manihot esculenta HOM05D004546 ORTHO05D005419 2.0e-104 383.6 437 54.9
GSVIVG01022895001 Vitis vinifera HOM05D004546 ORTHO05D005419 1.0e-103 381.3 442 54.1
MD15G1425300 Malus domestica HOM05D004546 ORTHO05D005419 2.9e-103 379.8 437 52.4
EL10Ac2g02703 Beta vulgaris HOM05D004546 ORTHO05D005419 1.1e-102 377.9 445 47.0
Gohir.D06G191600 Gossypium hirsutum HOM05D004546 ORTHO05D005419 4.3e-102 375.9 438 49.3
Aqoxy6G00209 Aquilegia oxysepala HOM05D004546 ORTHO05D005419 7.3e-102 375.2 439 47.2
CARHR052070 Cardamine hirsuta HOM05D004546 ORTHO05D005419 1.2e-101 374.4 437 46.7
TPR.G23101 Trifolium pratense HOM05D004546 ORTHO05D005419 1.2e-101 374.4 439 48.3
Eucgr.G00575 Eucalyptus grandis HOM05D004546 ORTHO05D005419 2.8e-101 373.2 438 50.7
Lj4g0018170 Lotus japonicus HOM05D004546 ORTHO05D005419 3.6e-101 372.9 439 46.9
Aa31LG2G9580 Aethionema arabicum HOM05D004640 ORTHO05D005489 6.1e-101 372.1 425 47.5
Lsat_1_v5_gn_5_105520 Lactuca sativa HOM05D004546 ORTHO05D005419 6.1e-101 372.1 439 49.0
FAN02G2941 Fragaria x ananassa HOM05D004546 ORTHO05D005419 9.8e-99 364.8 436 46.3
Carub.0002s0420 Capsella rubella HOM05D004546 ORTHO05D005419 4.9e-98 362.5 440 44.8
Sp2g03510 Schrenkiella parvula HOM05D004546 ORTHO05D005419 6.4e-98 362.1 438 47.0
HanXRQChr10g0290511 Helianthus annuus HOM05D004546 ORTHO05D005419 1.1e-97 361.3 442 47.5
RcHm_v2.0_Chr7g0222021 Rosa chinensis HOM05D004546 ORTHO05D005419 6.0e-96 355.5 436 46.1
Sabra07G0094500 Salix brachista HOM05D004546 ORTHO05D005419 6.6e-95 352.1 589 39.7
AT1G61000 Arabidopsis thaliana HOM05D004546 ORTHO05D005419 2.8e-93 346.7 440 43.6
SGA_v2.0_scaffold110G31325 Striga asiatica HOM05D004546 ORTHO05D005419 2.8e-93 346.7 441 45.4
C03p25600 Brassica napus HOM05D004546 ORTHO05D005419 3.6e-93 346.3 447 45.9
FvH4_6g25020 Fragaria vesca HOM05D004546 ORTHO05D005419 6.2e-93 345.5 436 44.5
TWI59G0103 Tripterygium wilfordii HOM05D004546 ORTHO05D005419 2.3e-92 343.6 443 49.2
Oeu033122.2 Olea europaea HOM05D004546 ORTHO05D005419 3.1e-92 343.2 247 67.2
BolC4t24246H Brassica oleracea HOM05D004546 ORTHO05D005419 4.0e-92 342.8 449 44.1
Medtr8g088840 Medicago truncatula HOM05D004546 ORTHO05D005419 6.8e-92 342.0 456 45.4
BolC3t14948H Brassica oleracea HOM05D004546 ORTHO05D005419 2.0e-91 340.5 456 44.7
Gorai.010G224800 Gossypium raimondii HOM05D004546 ORTHO05D005419 2.6e-91 340.1 438 45.9
Gohir.A06G184800 Gossypium hirsutum HOM05D004546 ORTHO05D005419 7.5e-91 338.6 415 47.7
Ah.14g086060 Amaranthus hybridus HOM05D004546 ORTHO05D005419 2.9e-90 336.7 430 45.1
arahy.Tifrunner.gnm1.ann1.SB4BQ5 Arachis hypogaea HOM05D004546 ORTHO05D005419 6.4e-90 335.5 456 41.7
A03p21620 Brassica napus HOM05D004546 ORTHO05D005419 6.4e-90 335.5 456 44.1
BraA03t11397Z Brassica rapa HOM05D004546 ORTHO05D005419 6.4e-90 335.5 456 44.1
FAN05G4088 Fragaria x ananassa HOM05D004546 ORTHO05D005419 5.4e-89 332.4 458 43.2
Psat7g062000 Pisum sativum HOM05D004546 ORTHO05D005419 9.2e-89 331.6 428 47.4
Ca_17808_v3 Cicer arietinum L. HOM05D004546 ORTHO05D005419 1.6e-88 330.9 436 46.6
FAN14G0315 Fragaria x ananassa HOM05D004546 ORTHO05D005419 7.8e-88 328.6 463 42.1
arahy.Tifrunner.gnm1.ann1.QA5S84 Arachis hypogaea HOM05D004546 ORTHO05D005419 1.7e-87 327.4 434 44.2
Cpa.g.sc8.264 Carica papaya HOM05D004546 ORTHO05D005419 2.3e-87 327.0 303 55.8
AUR62014224 Chenopodium quinoa HOM05D004546 ORTHO05D005419 3.9e-87 326.2 423 47.8
AUR62041118 Chenopodium quinoa HOM05D004546 ORTHO05D005419 3.9e-87 326.2 359 54.6
Thhalv10023463m.g Eutrema salsugineum HOM05D004546 ORTHO05D005419 9.5e-86 321.6 438 42.5
C04p25630 Brassica napus HOM05D004546 ORTHO05D005419 2.1e-85 320.5 498 39.8
FvH4_7g06682 Fragaria vesca HOM05D004546 ORTHO05D005419 1.4e-84 317.8 436 41.3
COL.COLO4_05853 Corchorus olitorius HOM05D004546 ORTHO05D005294 1.8e-84 317.4 442 44.8
FAN06G4932 Fragaria x ananassa HOM05D004546 ORTHO05D005419 4.0e-84 316.2 436 41.3
Medtr4g049650 Medicago truncatula HOM05D004546 ORTHO05D005419 1.5e-83 314.3 372 48.4
Gohir.D07G234200 Gossypium hirsutum HOM05D004546 ORTHO05D005419 2.6e-83 313.5 438 42.7
BcaC02g10598 Brassica carinata HOM05D004546 ORTHO05D005419 7.5e-83 312.0 465 40.6
PGR042G1236 Punica granatum HOM05D004546 ORTHO05D005419 4.9e-82 309.3 441 45.6
Atru.chr13.2649 Acer truncatum HOM05D004546 ORTHO05D005419 2.4e-81 307.0 344 54.4
Hund15499 Selenicereus undatus HOM05D004546 ORTHO05D005419 6.0e-80 302.4 324 50.9
Gohir.A07G227000 Gossypium hirsutum HOM05D004546 ORTHO05D005419 7.8e-80 302.0 415 43.4
RcHm_v2.0_Chr1g0336301 Rosa chinensis HOM05D004546 ORTHO05D005419 1.5e-78 297.7 352 45.7
Medtr8g088800 Medicago truncatula HOM05D004546 ORTHO05D005419 4.2e-73 279.6 413 44.1
Nn1g08777 Nelumbo nucifera HOM05D004546 ORTHO05D005419 5.1e-71 272.7 343 52.8
TPR.G28353 Trifolium pratense HOM05D004546 ORTHO05D005419 4.3e-70 269.6 258 53.9
HPP92_000323 Vanilla planifolia HOM05D004546 ORTHO05D005419 4.0e-68 263.1 451 35.9
Carub.0002s0419 Capsella rubella HOM05D004546 ORTHO05D005419 6.9e-68 262.3 459 36.8
COL.COLO4_10577 Corchorus olitorius HOM05D004546 ORTHO05D005419 6.9e-68 262.3 446 40.1
VMungo0251G0767 Vigna mungo HOM05D004546 ORTHO05D005419 1.2e-67 261.5 486 36.2
CDE08G0494 Ceratophyllum demersum HOM05D004546 ORTHO05D005419 1.3e-66 258.1 393 39.2
Rhsim09G0048900 Rhododendron simsii HOM05D004546 ORTHO05D005419 5.6e-62 242.7 413 39.7
TPR.G38758 Trifolium pratense HOM05D004546 ORTHO05D005419 9.6e-62 241.9 254 49.2
unitig_8.g2954 Utricularia gibba HOM05D004546 ORTHO05D005419 2.6e-59 233.8 436 36.9
Lsat_1_v5_gn_8_80961 Lactuca sativa HOM05D004546 ORTHO05D005419 4.5e-59 233.0 253 49.4
Eucgr.L03482 Eucalyptus grandis HOM05D004546 ORTHO05D005419 5.8e-59 232.6 220 52.3
Os03g0577100 Oryza sativa ssp. japonica HOM05D004546 ORTHO05D005419 3.2e-57 226.9 456 32.0
FAN03G2280 Fragaria x ananassa HOM05D004546 ORTHO05D005419 5.4e-57 226.1 609 28.6
COL.COLO4_13071 Corchorus olitorius HOM05D004546 ORTHO05D005419 4.6e-56 223.0 206 54.9
Os08g0163100 Oryza sativa ssp. japonica HOM05D004546 ORTHO05D005419 5.3e-52 209.5 452 31.0
AL2G15450 Arabidopsis lyrata HOM05D004546 ORTHO05D005419 1.1e-49 201.8 309 40.1
ATR0177G064 Amborella trichopoda HOM05D004546 ORTHO05D005419 4.3e-46 189.9 339 33.0
SEGI_32079 Sequoiadendron giganteum HOM05D004546 ORTHO05D005419 4.5e-43 179.9 355 34.4
MELO3C002916.2 Cucumis melo HOM05D004546 ORTHO05D005419 3.2e-41 173.7 220 46.4
C05p50930 Brassica napus HOM05D004546 ORTHO05D005419 5.5e-41 172.9 206 45.6
TPR.G31804 Trifolium pratense HOM05D004546 ORTHO05D005419 2.7e-40 170.6 213 50.7
TPR.G37878 Trifolium pratense HOM05D004546 ORTHO05D005419 9.0e-36 155.6 159 50.3
Atru.chr4.610 Acer truncatum HOM05D004546 ORTHO05D005419 6.5e-34 149.4 204 38.7
FAN10G1533 Fragaria x ananassa HOM05D004546 ORTHO05D005419 1.8e-31 141.4 424 28.1
Oeu027800.1 Olea europaea HOM05D004546 ORTHO05D005419 1.8e-31 141.4 158 54.4
Aqoxy7G01614 Aquilegia oxysepala HOM05D004546 ORTHO05D005419 2.3e-31 141.0 389 31.1
AagrBONN_evm.TU.Sc2ySwM_117.2656 Anthoceros agrestis HOM05D004546 ORTHO05D005419 3.3e-30 137.1 253 34.8
CAN.G1882.3 Capsicum annuum HOM05D004546 ORTHO05D005419 3.3e-30 137.1 82 89.0
Zm00001eb064460 Zea mays HOM05D004546 ORTHO05D005419 4.5e-27 126.7 357 29.7
Rhsim09G0048500 Rhododendron simsii HOM05D004546 ORTHO05D005419 4.2e-25 120.2 99 60.6
Rhsim09G0049000 Rhododendron simsii HOM05D004546 ORTHO05D005419 5.5e-25 119.8 99 59.6
CAN.G1882.2 Capsicum annuum HOM05D004546 ORTHO05D005419 2.7e-24 117.5 115 61.7
TPR.G37996 Trifolium pratense HOM05D004546 ORTHO05D005419 8.8e-23 112.5 185 40.0
RhsimUnG0234900 Rhododendron simsii HOM05D004546 ORTHO05D005419 3.3e-22 110.5 76 64.5
MD08G1232500 Malus domestica HOM05D004546 ORTHO05D005419 4.1e-20 103.6 97 47.4
PSO210G1504 Papaver somniferum HOM05D004546 ORTHO05D005419 1.7e-18 98.2 153 40.5
TPR.G7268 Trifolium pratense HOM05D004546 ORTHO05D005419 8.5e-18 95.9 74 66.2
C05p50920 Brassica napus HOM05D004546 ORTHO05D005419 1.0e-15 89.0 157 35.7
Mapoly0004s0096 Marchantia polymorpha HOM05D004546 ORTHO05D005419 2.3e-15 87.8 209 30.6
Hund15500 Selenicereus undatus HOM05D004546 ORTHO05D005419 1.3e-13 82.0 141 39.7
MBI17_g42496_MAGBIO Magnolia biondii HOM05D004546 ORTHO05D005419 4.5e-11 73.6 84 39.3
MCO07G624 Micromonas commoda HOM05D004546 ORTHO05D005419 3.8e-10 70.5 155 29.0
PRCOL_00002550 Prasinoderma coloniale HOM05D004546 ORTHO05D005419 5.0e-10 70.1 179 25.7
Actinidia39037 Actinidia chinensis HOM05D004546 ORTHO05D005419 4.2e-09 67.0 84 44.0
Actinidia39035 Actinidia chinensis HOM05D004546 ORTHO05D005419 1.0e-07 62.4 54 55.6
Atru.chr4.605 Acer truncatum HOM05D005324 ORTHO05D001185 3.0e-07 60.8 93 35.5
Pp3c12_6220 Physcomitrium patens HOM05D004546 ORTHO05D005419 1.5e-06 58.5 360 19.4
Rhsim13G0125100 Rhododendron simsii HOM05D000017 ORTHO05D000013 4.4e-06 57.0 65 55.4
TPR.G18400 Trifolium pratense HOM05D004546 ORTHO05D005419 7.5e-06 56.2 66 45.5


User provided reference genes

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