Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen10g008800 Solanum pennellii HOM05D006862 ORTHO05D008726 9.0e-128 460.3 237 100.0
Nitab4.5_0000210g0120 Nicotiana tabacum HOM05D006862 ORTHO05D008726 1.3e-107 393.3 234 85.9
CAN.G1432.28 Capsicum annuum HOM05D006862 ORTHO05D008726 1.5e-106 389.8 221 88.7
Nitab4.5_0003428g0010 Nicotiana tabacum HOM05D006862 ORTHO05D008726 2.5e-106 389.0 234 85.9
CSS0002443 Camellia sinensis var. sinensis HOM05D006862 ORTHO05D008726 4.8e-89 331.6 237 71.3
Dinv32268 Davidia involucrata HOM05D006862 ORTHO05D005283 3.1e-88 328.9 237 70.5
CSS0011508 Camellia sinensis var. sinensis HOM05D006862 ORTHO05D008726 5.3e-88 328.2 237 70.5
TAR381G1571 Trochodendron aralioides HOM05D006862 ORTHO05D008726 1.3e-86 323.6 237 70.0
Actinidia33490 Actinidia chinensis HOM05D006862 ORTHO05D008726 5.0e-86 321.6 237 67.5
MSTRG.28166 Avicennia marina HOM05D006862 ORTHO05D008726 5.0e-86 321.6 237 69.2
Oeu009615.1 Olea europaea HOM05D006862 ORTHO05D008726 5.0e-86 321.6 229 71.2
QL12p036953 Quercus lobata HOM05D006862 ORTHO05D008726 8.5e-86 320.9 236 68.6
Migut.N01765 Erythranthe guttata HOM05D006862 ORTHO05D008726 5.5e-85 318.2 240 68.8
Thecc.08G105700 Theobroma cacao HOM05D006862 ORTHO05D008726 1.2e-84 317.0 234 67.1
Gohir.A01G127200 Gossypium hirsutum HOM05D006862 ORTHO05D008726 2.7e-84 315.8 234 65.4
Hma1.2p1_0341F.1_g130400 Hydrangea macrophylla HOM05D006862 ORTHO05D008726 3.6e-84 315.5 237 67.5
CiPaw.08G045700 Carya illinoinensis HOM05D006862 ORTHO05D008726 1.0e-83 313.9 237 66.7
Gorai.002G140500 Gossypium raimondii HOM05D006862 ORTHO05D008726 1.4e-83 313.5 234 65.0
Sc23g0003870 Simmondsia chinensis HOM05D006862 ORTHO05D008726 3.0e-83 312.4 237 65.4
Duzib093G2032 Durio zibethinus HOM05D006862 ORTHO05D008726 1.1e-82 310.5 234 64.5
Nn1g05382 Nelumbo nucifera HOM05D006862 ORTHO05D008726 2.6e-82 309.3 240 65.4
MELO3C011029.2 Cucumis melo HOM05D006862 ORTHO05D008726 3.3e-82 308.9 234 65.8
Sabra05G0123800 Salix brachista HOM05D006862 ORTHO05D008726 4.4e-82 308.5 234 66.2
TWI23G1270 Tripterygium wilfordii HOM05D006862 ORTHO05D008726 4.4e-82 308.5 237 65.4
Gohir.D01G114900 Gossypium hirsutum HOM05D006862 ORTHO05D008726 5.7e-82 308.1 234 64.5
EL10Ac1g01209 Beta vulgaris HOM05D006862 ORTHO05D008726 1.3e-81 307.0 236 63.6
Lj7A540T61 Lonicera japonica HOM05D006862 ORTHO05D008726 1.7e-81 306.6 226 65.5
Manes.18G066800 Manihot esculenta HOM05D006862 ORTHO05D008726 1.7e-81 306.6 237 66.2
Potri.005G164300 Populus trichocarpa HOM05D006862 ORTHO05D008726 2.2e-81 306.2 233 65.2
RcHm_v2.0_Chr7g0238691 Rosa chinensis HOM05D006862 ORTHO05D008726 2.2e-81 306.2 238 65.5
CANSAT01G2845 Cannabis sativa HOM05D006862 ORTHO05D008726 2.8e-81 305.8 237 64.6
Glyma.15G146200 Glycine max HOM05D006862 ORTHO05D008726 2.8e-81 305.8 235 66.0
Glyma.09G040700 Glycine max HOM05D006862 ORTHO05D008726 1.4e-80 303.5 235 65.1
Prupe.1G518300 Prunus persica HOM05D006862 ORTHO05D008726 3.1e-80 302.4 236 64.0
Sed0019597 Sechium edule HOM05D006862 ORTHO05D008726 4.1e-80 302.0 234 63.2
TWI56G0923 Tripterygium wilfordii HOM05D006862 ORTHO05D008726 4.1e-80 302.0 237 65.0
Eucgr.F00331 Eucalyptus grandis HOM05D006862 ORTHO05D008726 5.3e-80 301.6 237 65.4
vmacro13466 Vaccinium macrocarpon HOM05D006862 ORTHO05D008726 7.0e-80 301.2 224 68.3
Cfa013642 Carpinus fangiana HOM05D006862 ORTHO05D008726 9.1e-80 300.8 213 69.0
MBI05_g39046_MAGBIO Magnolia biondii HOM05D006862 ORTHO05D008726 9.1e-80 300.8 237 65.0
DCAR_031876 Daucus carota HOM05D006862 ORTHO05D008726 1.2e-79 300.4 223 68.2
Ciclev10002323m.g Citrus clementina HOM05D006862 ORTHO05D008726 1.5e-79 300.1 237 64.1
FAN04G2864 Fragaria x ananassa HOM05D006862 ORTHO05D008726 1.5e-79 300.1 238 63.9
Aqoxy2G03696 Aquilegia oxysepala HOM05D006862 ORTHO05D008726 2.6e-79 299.3 236 63.6
CsaV3_2G029710 Cucumis sativus L. HOM05D006862 ORTHO05D008726 2.6e-79 299.3 234 64.1
MBI05_g44690_MAGBIO Magnolia biondii HOM05D006862 ORTHO05D008726 2.6e-79 299.3 237 65.0
MD08G1184100 Malus domestica HOM05D006862 ORTHO05D008726 3.5e-79 298.9 238 64.3
ClCG08G011130 Citrullus lanatus HOM05D006862 ORTHO05D008726 5.9e-79 298.1 224 66.5
FAN13G0737 Fragaria x ananassa HOM05D006862 ORTHO05D008726 5.9e-79 298.1 238 63.4
SGA_v2.0_scaffold43G16518 Striga asiatica HOM05D006862 ORTHO05D008726 5.9e-79 298.1 238 63.4
Cpa.g.sc36.141 Carica papaya HOM05D006862 ORTHO05D008726 7.7e-79 297.7 224 65.2
FAN18G1242 Fragaria x ananassa HOM05D006862 ORTHO05D008726 7.7e-79 297.7 238 63.4
AUR62027770 Chenopodium quinoa HOM05D006862 ORTHO05D008726 1.0e-78 297.4 236 61.4
FvH4_5g37140 Fragaria vesca HOM05D006862 ORTHO05D008726 1.3e-78 297.0 238 63.0
PGR042G4010 Punica granatum HOM05D006862 ORTHO05D008726 2.2e-78 296.2 234 64.1
Ca_01890_v3 Cicer arietinum L. HOM05D006862 ORTHO05D008726 2.9e-78 295.8 226 65.0
GSVIVG01020916001 Vitis vinifera HOM05D006862 ORTHO05D008726 2.9e-78 295.8 254 60.6
Phvul.009G253100 Phaseolus vulgaris HOM05D006862 ORTHO05D008726 1.1e-77 293.9 235 63.0
VMungo1309G2304 Vigna mungo HOM05D006862 ORTHO05D008726 3.2e-77 292.4 237 63.3
COL.COLO4_16384 Corchorus olitorius HOM05D006862 ORTHO05D008726 9.4e-77 290.8 214 67.8
Hund16900 Selenicereus undatus HOM05D006862 ORTHO05D008726 2.7e-76 289.3 213 68.5
Atru.chr13.1175 Acer truncatum HOM05D006862 ORTHO05D008726 1.4e-75 287.0 241 60.2
Lalb_Chr18g0059041 Lupinus albus HOM05D006862 ORTHO05D008726 1.1e-74 283.9 235 60.9
Ah.12g052780 Amaranthus hybridus HOM05D006862 ORTHO05D008726 1.5e-74 283.5 235 60.0
Medtr2g035310 Medicago truncatula HOM05D006862 ORTHO05D008726 1.5e-74 283.5 226 62.8
SalBow5G3922 Salvia bowleyana HOM05D006862 ORTHO05D008726 2.0e-74 283.1 214 64.0
Cc02_g24490 Coffea canephora HOM05D006862 ORTHO05D008726 4.4e-74 282.0 229 63.8
PSO447G0083 Papaver somniferum HOM05D006862 ORTHO05D008726 4.4e-74 282.0 236 59.7
arahy.Tifrunner.gnm1.ann1.ZLG2GC Arachis hypogaea HOM05D006862 ORTHO05D008726 9.7e-74 280.8 229 62.9
Psat1g156880 Pisum sativum HOM05D006862 ORTHO05D008726 1.3e-73 280.4 228 62.3
THA.LOC104806470 Tarenaya hassleriana HOM05D006862 ORTHO05D008726 2.8e-73 279.3 238 59.2
Thhalv10001858m.g Eutrema salsugineum HOM05D006862 ORTHO05D008726 4.1e-72 275.4 238 57.6
arahy.Tifrunner.gnm1.ann1.F2RQ7H Arachis hypogaea HOM05D006862 ORTHO05D008726 2.6e-71 272.7 229 60.3
PSO210G6562 Papaver somniferum HOM05D006862 ORTHO05D008726 3.5e-71 272.3 240 57.9
Solyc10g018870.2 Solanum lycopersicum HOM05D006862 ORTHO05D008726 4.5e-71 271.9 139 97.8
BraA08t32838Z Brassica rapa HOM05D006862 ORTHO05D008726 5.9e-71 271.6 238 57.1
TPR.G28474 Trifolium pratense HOM05D006862 ORTHO05D008726 5.9e-71 271.6 226 63.3
HPP92_002325 Vanilla planifolia HOM05D006862 ORTHO05D008726 3.8e-70 268.9 222 59.9
BcaB04g17850 Brassica carinata HOM05D006862 ORTHO05D008726 5.0e-70 268.5 238 56.7
Aa31LG6G8550 Aethionema arabicum HOM05D006862 ORTHO05D008726 6.5e-70 268.1 238 57.1
BcaC07g37529 Brassica carinata HOM05D006862 ORTHO05D008726 3.2e-69 265.8 238 56.3
BolC8t47847H Brassica oleracea HOM05D006862 ORTHO05D008726 3.2e-69 265.8 238 56.3
A08p08160 Brassica napus HOM05D006862 ORTHO05D008726 4.2e-69 265.4 229 57.6
Carub.0001s3270 Capsella rubella HOM05D006862 ORTHO05D008726 1.2e-68 263.8 238 55.5
Sp1g29820 Schrenkiella parvula HOM05D006862 ORTHO05D008726 2.1e-68 263.1 238 55.5
Os07g0151300 Oryza sativa ssp. japonica HOM05D006862 ORTHO05D008726 1.4e-67 260.4 238 56.3
unitig_22.g6705 Utricularia gibba HOM05D006862 ORTHO05D008726 3.0e-67 259.2 262 52.3
AL1G49800 Arabidopsis lyrata HOM05D006862 ORTHO05D008726 5.2e-67 258.5 240 55.0
AT1G34770 Arabidopsis thaliana HOM05D006862 ORTHO05D008726 5.2e-67 258.5 235 55.7
ECA236G4229 Erigeron canadensis HOM05D006862 ORTHO05D008726 1.2e-66 257.3 237 57.0
CARHR034040 Cardamine hirsuta HOM05D006862 ORTHO05D008726 2.6e-66 256.1 239 54.8
Zm00001eb300080 Zea mays HOM05D006862 ORTHO05D008726 1.4e-64 250.4 225 57.3
CDE10G0559 Ceratophyllum demersum HOM05D006862 ORTHO05D008726 5.3e-64 248.4 208 59.6
Lsat_1_v5_gn_7_11121 Lactuca sativa HOM05D001703 ORTHO05D005708 5.9e-63 245.0 222 55.9
AUR62018925 Chenopodium quinoa HOM05D006862 ORTHO05D008726 6.3e-57 224.9 224 51.8
RcHm_v2.0_Chr7g0243981 Rosa chinensis HOM05D006862 ORTHO05D008726 1.9e-53 213.4 232 54.7
ATR0782G115 Amborella trichopoda HOM05D006862 ORTHO05D008726 4.2e-53 212.2 234 50.9
Haze_22271 Corylus avellana HOM05D006862 ORTHO05D008726 8.0e-52 208.0 152 71.1
Hma1.2p1_0341F.1_g130390 Hydrangea macrophylla HOM05D006862 ORTHO05D008726 1.4e-51 207.2 158 65.2
Peaxi162Scf00001g05620 Petunia axillaris HOM05D006862 ORTHO05D008726 4.5e-47 192.2 164 62.8
Pp3c15_18480 Physcomitrium patens HOM05D006862 ORTHO05D008726 2.0e-42 176.8 211 44.1
Ciclev10006681m.g Citrus clementina HOM05D006862 ORTHO05D008726 1.5e-37 160.6 237 42.2
Psat1g146360 Pisum sativum HOM05D006862 ORTHO05D008726 1.5e-37 160.6 149 55.0
AagrBONN_evm.TU.Sc2ySwM_344.2907 Anthoceros agrestis HOM05D006862 ORTHO05D008726 2.5e-37 159.8 225 40.0
HanXRQChr04g0123461 Helianthus annuus HOM05D006862 ORTHO05D008726 5.6e-37 158.7 158 51.9
Mapoly0069s0077 Marchantia polymorpha HOM05D006862 ORTHO05D008726 9.5e-37 157.9 208 43.3
CBR_g23028 Chara braunii HOM05D006862 ORTHO05D008726 4.7e-36 155.6 216 37.5
CBR_g8943 Chara braunii HOM05D006862 ORTHO05D008726 2.0e-34 150.2 215 36.7
MCO09G856 Micromonas commoda HOM05D006862 ORTHO05D008726 7.8e-31 138.3 217 35.0
FAN08G1952 Fragaria x ananassa HOM05D006862 ORTHO05D008726 6.2e-28 128.6 103 67.0
Psat7g091920 Pisum sativum HOM05D006862 ORTHO05D008726 1.7e-25 120.6 118 52.5
Lsat_1_v5_gn_4_149521 Lactuca sativa HOM05D006862 ORTHO05D008726 2.3e-22 110.2 110 53.6
SalBow4G2162 Salvia bowleyana HOM05D006862 ORTHO05D008726 2.5e-21 106.7 70 68.6
PRCOL_00000002 Prasinoderma coloniale HOM05D006862 ORTHO05D008726 4.0e-19 99.4 202 33.2
Rhsim07G0033200 Rhododendron simsii HOM05D006089 ORTHO05D007345 1.6e-07 60.8 43 65.1
Lsat_1_v5_gn_2_48340 Lactuca sativa HOM05D006862 ORTHO05D008726 3.5e-07 59.7 88 44.3
Lsat_1_v5_gn_6_41620 Lactuca sativa HOM05D006862 ORTHO05D008726 3.5e-07 59.7 88 44.3
Nitab4.5_0000187g0300 Nicotiana tabacum HOM05D006862 ORTHO05D284191 6.6e-06 55.5 93 39.8


User provided reference genes

Program Settings