Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen10g007010 Solanum pennellii HOM05D000017 ORTHO05D000013 1.4e-62 242.7 114 100.0
Sopen01g014170 Solanum pennellii HOM05D000017 ORTHO05D000013 1.4e-49 199.5 103 90.3
PGSC0003DMG400029821 Solanum tuberosum HOM05D000017 ORTHO05D000013 6.4e-31 137.5 99 63.6
Sopen07g022020 Solanum pennellii HOM05D000017 ORTHO05D000013 9.2e-30 133.7 69 88.4
Sopen06g011940 Solanum pennellii HOM05D000017 ORTHO05D000013 5.2e-25 117.9 100 54.0
Sopen05g015880 Solanum pennellii HOM05D000017 ORTHO05D000013 1.5e-24 116.3 100 54.0
Sopen12g022630 Solanum pennellii HOM05D000017 ORTHO05D000013 1.5e-24 116.3 100 54.0
Nitab4.5_0000469g0110 Nicotiana tabacum HOM05D000017 ORTHO05D000013 7.1e-22 107.5 99 49.5
Nitab4.5_0000425g0160 Nicotiana tabacum HOM05D000017 ORTHO05D000013 1.6e-21 106.3 100 49.0
Sopen09g026440 Solanum pennellii HOM05D000017 ORTHO05D000013 4.6e-21 104.8 97 54.6
Sopen12g007420 Solanum pennellii HOM05D000017 ORTHO05D000013 4.6e-21 104.8 97 54.6
Nitab4.5_0009797g0010 Nicotiana tabacum HOM05D000017 ORTHO05D000013 1.0e-20 103.6 103 49.5
CAN.G1124.2 Capsicum annuum HOM05D006962 ORTHO05D008696 1.1e-19 100.1 85 54.1
Sopen08g018780 Solanum pennellii HOM05D000017 ORTHO05D000013 5.6e-19 97.8 98 49.0
Sopen05g009000 Solanum pennellii HOM05D000017 ORTHO05D000013 1.3e-18 96.7 98 48.0
Sopen04g019350 Solanum pennellii HOM05D006864 ORTHO05D000013 4.8e-18 94.7 103 46.6
Sopen01g037270 Solanum pennellii HOM05D000017 ORTHO05D000013 6.2e-18 94.4 101 47.5
Sopen11g029160 Solanum pennellii HOM05D000017 ORTHO05D000013 6.2e-18 94.4 101 47.5
Sopen03g030620 Solanum pennellii HOM05D000017 ORTHO05D000013 8.1e-18 94.0 91 50.5
Sopen08g017470 Solanum pennellii HOM05D000017 ORTHO05D000013 1.4e-17 93.2 98 48.0
Sopen09g012340 Solanum pennellii HOM05D006864 ORTHO05D000013 1.8e-17 92.8 91 50.5
Nitab4.5_0008167g0070 Nicotiana tabacum HOM05D007248 ORTHO05D000013 1.3e-15 86.7 77 51.9
Sopen01g015850 Solanum pennellii HOM05D000004 ORTHO05D000002 1.7e-15 86.3 92 46.7
PGSC0003DMG400045123 Solanum tuberosum HOM05D000017 ORTHO05D000013 2.2e-15 85.9 102 45.1
Sopen02g001070 Solanum pennellii HOM05D000017 ORTHO05D000013 2.9e-15 85.5 101 44.6
Sopen02g032130 Solanum pennellii HOM05D000629 ORTHO05D000013 2.9e-15 85.5 101 44.6
Sopen05g006380 Solanum pennellii HOM05D000017 ORTHO05D000013 2.9e-15 85.5 101 44.6
Sopen06g002940 Solanum pennellii HOM05D000017 ORTHO05D000013 2.9e-15 85.5 101 44.6
Sopen10g020700 Solanum pennellii HOM05D000017 ORTHO05D000013 2.9e-15 85.5 101 44.6
Sopen12g019990 Solanum pennellii HOM05D000017 ORTHO05D000013 2.9e-15 85.5 101 44.6
Sopen06g004330 Solanum pennellii HOM05D000017 ORTHO05D000013 8.4e-15 84.0 101 43.6
Sopen10g005080 Solanum pennellii HOM05D000017 ORTHO05D000013 8.4e-15 84.0 101 43.6
Sopen09g007640 Solanum pennellii HOM05D000017 ORTHO05D000013 1.1e-14 83.6 101 42.6
Sopen10g022230 Solanum pennellii HOM05D000017 ORTHO05D000013 2.4e-14 82.4 101 43.6
Sopen01g024200 Solanum pennellii HOM05D000017 ORTHO05D000013 3.2e-14 82.0 94 42.6
Sopen06g004080 Solanum pennellii HOM05D000017 ORTHO05D000013 7.1e-14 80.9 90 45.6
Sopen11g019130 Solanum pennellii HOM05D000047 ORTHO05D000589 2.7e-13 79.0 97 44.3
Sopen02g012130 Solanum pennellii HOM05D000017 ORTHO05D000013 3.5e-13 78.6 101 41.6
Sopen05g013600 Solanum pennellii HOM05D000017 ORTHO05D000013 3.5e-13 78.6 93 46.2
Nitab4.5_0002951g0040 Nicotiana tabacum HOM05D000017 ORTHO05D000013 4.6e-13 78.2 100 40.0
Sopen11g020500 Solanum pennellii HOM05D000017 ORTHO05D000013 4.6e-13 78.2 101 42.6
PGSC0003DMG400040725 Solanum tuberosum HOM05D000017 ORTHO05D000013 1.8e-12 76.3 99 39.4
Nitab4.5_0000584g0090 Nicotiana tabacum HOM05D006864 ORTHO05D002765 3.9e-12 75.1 105 37.1
Nitab4.5_0002352g0130 Nicotiana tabacum HOM05D000017 ORTHO05D000013 8.7e-12 73.9 103 38.8
Nitab4.5_0005259g0050 Nicotiana tabacum HOM05D000017 ORTHO05D000013 1.1e-11 73.6 66 51.5
Sopen12g022780 Solanum pennellii HOM05D000017 ORTHO05D000013 1.1e-11 73.6 94 42.6
Nitab4.5_0001115g0040 Nicotiana tabacum HOM05D000017 ORTHO05D000013 1.9e-11 72.8 97 42.3
Sopen04g016440 Solanum pennellii HOM05D000017 ORTHO05D000013 1.9e-11 72.8 62 53.2
CAN.G72.21 Capsicum annuum HOM05D000017 ORTHO05D000013 2.5e-11 72.4 85 44.7
CANSAT80G1581 Cannabis sativa HOM05D000017 ORTHO05D000013 3.3e-11 72.0 94 39.4
Nitab4.5_0007904g0040 Nicotiana tabacum HOM05D006864 ORTHO05D000013 5.6e-11 71.2 99 38.4
Nitab4.5_0004697g0110 Nicotiana tabacum HOM05D006864 ORTHO05D000013 7.4e-11 70.9 80 42.5
Nitab4.5_0009921g0050 Nicotiana tabacum HOM05D006864 ORTHO05D002765 7.4e-11 70.9 92 39.1
CANSAT11G1017 Cannabis sativa HOM05D000017 ORTHO05D000013 9.6e-11 70.5 99 39.4
CANSAT64G0496 Cannabis sativa HOM05D000017 ORTHO05D000013 9.6e-11 70.5 99 39.4
CANSAT35G1872 Cannabis sativa HOM05D000017 ORTHO05D000013 2.1e-10 69.3 99 39.4
CANSAT80G0028 Cannabis sativa HOM05D000017 ORTHO05D000013 2.1e-10 69.3 103 39.8
Atru.chr5.2092 Acer truncatum HOM05D000017 ORTHO05D000013 4.8e-10 68.2 85 47.1
CANSAT01G2928 Cannabis sativa HOM05D000017 ORTHO05D000013 4.8e-10 68.2 97 40.2
CANSAT25G1145 Cannabis sativa HOM05D000017 ORTHO05D000013 4.8e-10 68.2 99 38.4
CANSAT56G3267 Cannabis sativa HOM05D000017 ORTHO05D000013 4.8e-10 68.2 97 40.2
CANSAT64G0736 Cannabis sativa HOM05D000017 ORTHO05D000013 4.8e-10 68.2 97 40.2
CANSAT54G2185 Cannabis sativa HOM05D000017 ORTHO05D000013 6.2e-10 67.8 99 38.4
CANSAT78G0171 Cannabis sativa HOM05D000017 ORTHO05D000013 6.2e-10 67.8 97 36.1
Sopen05g027300 Solanum pennellii HOM05D000017 ORTHO05D000013 8.1e-10 67.4 83 42.2
Sopen05g008000 Solanum pennellii HOM05D000017 ORTHO05D000013 1.1e-09 67.0 89 36.0
Sopen07g015490 Solanum pennellii HOM05D000017 ORTHO05D000013 1.1e-09 67.0 89 36.0
Atru.chr7.75 Acer truncatum HOM05D000017 ORTHO05D000013 1.4e-09 66.6 82 45.1
Sopen00g010330 Solanum pennellii HOM05D000017 ORTHO05D000013 1.4e-09 66.6 89 36.0
Sopen04g032910 Solanum pennellii HOM05D000017 ORTHO05D000013 1.4e-09 66.6 89 36.0
Sopen08g005870 Solanum pennellii HOM05D000017 ORTHO05D000013 1.4e-09 66.6 89 36.0
Sopen11g013400 Solanum pennellii HOM05D000017 ORTHO05D000013 1.4e-09 66.6 89 36.0
Peaxi162Scf01226g00018 Petunia axillaris HOM05D006864 ORTHO05D000013 2.4e-09 65.9 108 35.2
Sopen06g011270 Solanum pennellii HOM05D000017 ORTHO05D000013 2.4e-09 65.9 65 50.8
CANSAT56G3653 Cannabis sativa HOM05D000017 ORTHO05D000013 3.1e-09 65.5 95 37.9
Nitab4.5_0003079g0090 Nicotiana tabacum HOM05D006864 ORTHO05D000013 3.1e-09 65.5 76 43.4
Nitab4.5_0000576g0050 Nicotiana tabacum HOM05D009153 ORTHO05D011903 4.0e-09 65.1 97 40.2
Peaxi162Scf00034g00042 Petunia axillaris HOM05D000017 ORTHO05D000013 4.0e-09 65.1 94 38.3
Atru.chr4.284 Acer truncatum HOM05D000017 ORTHO05D000013 6.9e-09 64.3 82 43.9
CANSAT21G2295 Cannabis sativa HOM05D000017 ORTHO05D000013 6.9e-09 64.3 98 38.8
CANSAT54G1361 Cannabis sativa HOM05D000017 ORTHO05D000013 9.0e-09 63.9 97 36.1
CANSAT64G1942 Cannabis sativa HOM05D000017 ORTHO05D000013 9.0e-09 63.9 99 35.4
BolC8t47174H Brassica oleracea HOM05D027291 ORTHO05D022061 1.5e-08 63.2 109 37.6
Peaxi162Scf00049g01111 Petunia axillaris HOM05D000017 ORTHO05D000013 1.5e-08 63.2 94 37.2
Peaxi162Scf00242g00914 Petunia axillaris HOM05D000017 ORTHO05D000013 1.5e-08 63.2 94 37.2
Peaxi162Scf00359g00410 Petunia axillaris HOM05D000017 ORTHO05D000013 1.5e-08 63.2 94 37.2
CANSAT25G2758 Cannabis sativa HOM05D000017 ORTHO05D000013 2.0e-08 62.8 97 35.1
CANSAT56G0213 Cannabis sativa HOM05D000017 ORTHO05D000013 2.0e-08 62.8 99 37.4
CANSAT80G0400 Cannabis sativa HOM05D000017 ORTHO05D000013 2.0e-08 62.8 82 42.7
CANSAT35G1386 Cannabis sativa HOM05D000017 ORTHO05D000013 2.6e-08 62.4 97 37.1
Nitab4.5_0005199g0100 Nicotiana tabacum HOM05D006864 ORTHO05D000013 2.6e-08 62.4 99 36.4
Rhsim02G0019500 Rhododendron simsii HOM05D000017 ORTHO05D000013 2.6e-08 62.4 102 39.2
Atru.chr3.2247 Acer truncatum HOM05D000017 ORTHO05D000013 3.4e-08 62.0 80 45.0
CANSAT78G1370 Cannabis sativa HOM05D000017 ORTHO05D000013 3.4e-08 62.0 60 46.7
Peaxi162Scf00361g00094 Petunia axillaris HOM05D000017 ORTHO05D000013 3.4e-08 62.0 94 36.2
Sopen05g012450 Solanum pennellii HOM05D000017 ORTHO05D009561 3.4e-08 62.0 97 40.2
Sopen06g017430 Solanum pennellii HOM05D000017 ORTHO05D000013 3.4e-08 62.0 97 40.2
Sopen10g017570 Solanum pennellii HOM05D000017 ORTHO05D009561 3.4e-08 62.0 98 41.8
Sopen11g026090 Solanum pennellii HOM05D000017 ORTHO05D000013 3.4e-08 62.0 97 40.2
Sopen12g005860 Solanum pennellii HOM05D000017 ORTHO05D000013 3.4e-08 62.0 97 40.2
Sopen07g013190 Solanum pennellii HOM05D000017 ORTHO05D000013 4.5e-08 61.6 89 33.7
CANSAT01G0945 Cannabis sativa HOM05D000017 ORTHO05D000013 5.8e-08 61.2 87 37.9
CANSAT56G0674 Cannabis sativa HOM05D000017 ORTHO05D000013 5.8e-08 61.2 87 37.9
Oeu044663.1 Olea europaea HOM05D000017 ORTHO05D000013 5.8e-08 61.2 91 39.6
Sopen05g012050 Solanum pennellii HOM05D000017 ORTHO05D000013 5.8e-08 61.2 97 39.2
Sopen11g013980 Solanum pennellii HOM05D000017 ORTHO05D009561 5.8e-08 61.2 97 40.2
Sopen09g015990 Solanum pennellii HOM05D000017 ORTHO05D000013 7.6e-08 60.8 97 40.2
Sopen10g008530 Solanum pennellii HOM05D000017 ORTHO05D000013 7.6e-08 60.8 47 55.3
CANSAT01G2730 Cannabis sativa HOM05D000017 ORTHO05D000013 9.9e-08 60.5 86 34.9
CANSAT25G2979 Cannabis sativa HOM05D000017 ORTHO05D000013 9.9e-08 60.5 86 34.9
CANSAT35G1787 Cannabis sativa HOM05D000017 ORTHO05D000013 9.9e-08 60.5 86 34.9
CANSAT78G2080 Cannabis sativa HOM05D000017 ORTHO05D000013 9.9e-08 60.5 86 34.9
Hma1.2p1_1000F.1_g246450 Hydrangea macrophylla HOM05D000017 ORTHO05D000013 9.9e-08 60.5 98 40.8
Oeu041029.1 Olea europaea HOM05D000017 ORTHO05D000013 9.9e-08 60.5 96 38.5
PGSC0003DMG400013047 Solanum tuberosum HOM05D000017 ORTHO05D000013 9.9e-08 60.5 98 42.9
CANSAT11G0248 Cannabis sativa HOM05D000017 ORTHO05D000013 1.3e-07 60.1 86 34.9
CANSAT21G0637 Cannabis sativa HOM05D000017 ORTHO05D000013 1.3e-07 60.1 78 41.0
CANSAT56G4317 Cannabis sativa HOM05D000017 ORTHO05D000013 1.3e-07 60.1 86 34.9
CANSAT78G0358 Cannabis sativa HOM05D000017 ORTHO05D000013 1.3e-07 60.1 96 37.5
Sopen08g001370 Solanum pennellii HOM05D000017 ORTHO05D000013 1.3e-07 60.1 97 39.2
Atru.chr4.193 Acer truncatum HOM05D000017 ORTHO05D000013 1.7e-07 59.7 90 43.3
CANSAT01G1536 Cannabis sativa HOM05D000017 ORTHO05D000013 1.7e-07 59.7 86 34.9
CANSAT11G2350 Cannabis sativa HOM05D000017 ORTHO05D000013 1.7e-07 59.7 86 34.9
CANSAT80G0531 Cannabis sativa HOM05D000017 ORTHO05D000013 1.7e-07 59.7 103 38.8
CANSAT54G0599 Cannabis sativa HOM05D000017 ORTHO05D000013 2.2e-07 59.3 86 34.9
Hma1.2p1_0593F.1_g185740 Hydrangea macrophylla HOM05D000017 ORTHO05D000013 2.2e-07 59.3 101 37.6
Hma1.2p1_2684F.1_g326900 Hydrangea macrophylla HOM05D000017 ORTHO05D000013 2.2e-07 59.3 101 37.6
Sopen09g011090 Solanum pennellii HOM05D000017 ORTHO05D009561 2.2e-07 59.3 97 39.2
Sopen10g013120 Solanum pennellii HOM05D000017 ORTHO05D000013 2.2e-07 59.3 97 39.2
Atru.chr2.1868 Acer truncatum HOM05D000017 ORTHO05D000013 2.9e-07 58.9 72 48.6
CANSAT54G0555 Cannabis sativa HOM05D000017 ORTHO05D000013 2.9e-07 58.9 99 35.4
Hma1.2p1_0775F.1_g216450 Hydrangea macrophylla HOM05D000017 ORTHO05D000013 2.9e-07 58.9 94 39.4
Sopen12g021230 Solanum pennellii HOM05D000017 ORTHO05D000013 2.9e-07 58.9 70 40.0
Atru.chr9.45 Acer truncatum HOM05D000017 ORTHO05D000013 3.8e-07 58.5 90 37.8
EL10Ac4g07578 Beta vulgaris HOM05D012490 ORTHO05D000013 3.8e-07 58.5 102 35.3
Oeu046191.1 Olea europaea HOM05D000017 ORTHO05D000013 3.8e-07 58.5 91 38.5
Sopen02g010790 Solanum pennellii HOM05D000017 ORTHO05D009561 3.8e-07 58.5 95 40.0
CANSAT11G1015 Cannabis sativa HOM05D000017 ORTHO05D000013 4.9e-07 58.2 82 41.5
Ciclev10006748m.g Citrus clementina HOM05D000017 ORTHO05D000013 4.9e-07 58.2 79 44.3
Atru.chr2.2585 Acer truncatum HOM05D000017 ORTHO05D000013 6.4e-07 57.8 86 37.2
Sopen10g016690 Solanum pennellii HOM05D000017 ORTHO05D000013 6.4e-07 57.8 80 36.2
Hma1.2p1_0085F.1_g044120 Hydrangea macrophylla HOM05D000017 ORTHO05D000013 8.4e-07 57.4 98 40.8
Hma1.2p1_0085F.1_g044131 Hydrangea macrophylla HOM05D000017 ORTHO05D000013 8.4e-07 57.4 98 40.8
Oeu020532.1 Olea europaea HOM05D000017 ORTHO05D000013 8.4e-07 57.4 87 34.5
Rhsim03G0174600 Rhododendron simsii HOM05D000017 ORTHO05D000013 1.1e-06 57.0 92 43.5
CANSAT35G1558 Cannabis sativa HOM05D000017 ORTHO05D000013 1.4e-06 56.6 86 33.7
CANSAT35G1652 Cannabis sativa HOM05D000017 ORTHO05D000013 1.9e-06 56.2 86 33.7
Oeu058201.1 Olea europaea HOM05D000017 ORTHO05D000013 1.9e-06 56.2 87 35.6
BraA07t31230Z Brassica rapa HOM05D000017 ORTHO05D000013 2.4e-06 55.8 87 37.9
Hma1.2p1_0026F.1_g016405 Hydrangea macrophylla HOM05D000017 ORTHO05D000013 2.4e-06 55.8 97 39.2
Hma1.2p1_0292F.1_g115670 Hydrangea macrophylla HOM05D000017 ORTHO05D000013 2.4e-06 55.8 97 39.2
Hma1.2p1_1314F.1_g275035 Hydrangea macrophylla HOM05D000017 ORTHO05D000013 2.4e-06 55.8 97 39.2
Nitab4.5_0006936g0070 Nicotiana tabacum HOM05D006864 ORTHO05D002765 2.4e-06 55.8 89 39.3
Atru.chr6.1119 Acer truncatum HOM05D000017 ORTHO05D000013 3.2e-06 55.5 82 41.5
CANSAT25G1752 Cannabis sativa HOM05D000017 ORTHO05D000013 3.2e-06 55.5 86 34.9
Atru.chr6.617 Acer truncatum HOM05D000017 ORTHO05D000013 4.2e-06 55.1 67 44.8
Oeu005232.1 Olea europaea HOM05D000017 ORTHO05D000013 4.2e-06 55.1 87 32.2
Oeu012527.1 Olea europaea HOM05D000017 ORTHO05D000013 4.2e-06 55.1 90 35.6
Peaxi162Scf00020g01812 Petunia axillaris HOM05D000017 ORTHO05D000013 4.2e-06 55.1 72 40.3
vmacro23380 Vaccinium macrocarpon HOM05D007604 ORTHO05D008966 5.5e-06 54.7 81 38.3
CSS0043105 Camellia sinensis var. sinensis HOM05D000017 ORTHO05D000013 7.1e-06 54.3 104 29.8
CANSAT21G2128 Cannabis sativa HOM05D000017 ORTHO05D000013 7.1e-06 54.3 89 36.0
Sopen02g010180 Solanum pennellii HOM05D000017 ORTHO05D009909 7.1e-06 54.3 90 37.8
Atru.chr9.320 Acer truncatum HOM05D000017 ORTHO05D000013 9.3e-06 53.9 84 36.9
CANSAT01G1843 Cannabis sativa HOM05D000017 ORTHO05D000013 9.3e-06 53.9 99 31.3
CANSAT78G2408 Cannabis sativa HOM05D000017 ORTHO05D000013 9.3e-06 53.9 97 32.0
Hma1.2p1_2904F.1_g330080 Hydrangea macrophylla HOM05D000017 ORTHO05D000013 9.3e-06 53.9 97 38.1
Sed0005941 Sechium edule HOM05D000017 ORTHO05D000013 9.3e-06 53.9 100 37.0


User provided reference genes

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