Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen10g005900 Solanum pennellii HOM05D010533 ORTHO05D003378 2.9e-60 235.0 112 100.0
Solyc10g012130.1 Solanum lycopersicum HOM05D010533 ORTHO05D003378 2.3e-57 225.3 112 95.5
PGSC0003DMG400038800 Solanum tuberosum HOM05D010533 ORTHO05D003378 3.2e-43 178.3 116 71.6
PGSC0003DMG400036647 Solanum tuberosum HOM05D010533 ORTHO05D003378 2.6e-37 158.7 111 66.7
PGSC0003DMG400044023 Solanum tuberosum HOM05D010533 ORTHO05D003378 2.2e-36 155.6 113 64.6
Solyc10g012110.3 Solanum lycopersicum HOM05D010533 ORTHO05D003378 5.5e-35 151.0 111 64.0
Sopen10g005870 Solanum pennellii HOM05D010533 ORTHO05D003378 5.5e-35 151.0 111 64.0
Sopen10g005880 Solanum pennellii HOM05D010533 ORTHO05D003378 1.2e-34 149.8 111 63.1
PGSC0003DMG400035278 Solanum tuberosum HOM05D010533 ORTHO05D003378 2.7e-34 148.7 111 64.9
Solyc10g012120.1 Solanum lycopersicum HOM05D010533 ORTHO05D003378 7.9e-34 147.1 111 62.2
PGSC0003DMG400041307 Solanum tuberosum HOM05D010533 ORTHO05D003378 1.0e-33 146.7 111 63.1
CAN.G650.39 Capsicum annuum HOM05D010533 ORTHO05D003378 9.7e-24 113.6 111 51.4
Peaxi162Scf00008g00288 Petunia axillaris HOM05D010533 ORTHO05D003378 4.7e-18 94.7 100 50.0
Peaxi162Scf00066g00202 Petunia axillaris HOM05D010533 ORTHO05D003378 2.6e-16 89.0 107 41.1
Nitab4.5_0001821g0020 Nicotiana tabacum HOM05D000275 ORTHO05D003378 2.4e-14 82.4 108 38.0
SGA_v2.0_scaffold4G01900 Striga asiatica HOM05D000275 ORTHO05D003378 7.0e-14 80.9 105 39.0
Nitab4.5_0010416g0010 Nicotiana tabacum HOM05D000275 ORTHO05D003378 2.7e-13 79.0 96 39.6
Oeu043634.1 Olea europaea HOM05D010533 ORTHO05D003378 3.5e-13 78.6 103 39.8
Peaxi162Scf00033g00043 Petunia axillaris HOM05D000275 ORTHO05D003378 1.7e-12 76.3 109 35.8
MSTRG.7190 Avicennia marina HOM05D000275 ORTHO05D003378 5.0e-12 74.7 111 34.2
Migut.M01357 Erythranthe guttata HOM05D010533 ORTHO05D003378 1.1e-11 73.6 90 40.0
Ciclev10018268m.g Citrus clementina HOM05D000275 ORTHO05D003378 1.9e-11 72.8 91 40.7
TAR629G3202 Trochodendron aralioides HOM05D000275 ORTHO05D003378 3.2e-11 72.0 107 40.2
Lalb_Chr12g0203611 Lupinus albus HOM05D006508 ORTHO05D003378 7.2e-11 70.9 116 34.5
DCAR_003257 Daucus carota HOM05D006508 ORTHO05D003378 9.4e-11 70.5 110 36.4
TAR629G2992 Trochodendron aralioides HOM05D006508 ORTHO05D003378 1.2e-10 70.1 107 37.4
COL.COLO4_03647 Corchorus olitorius HOM05D006508 ORTHO05D003378 1.6e-10 69.7 90 36.7
DCAR_013213 Daucus carota HOM05D006508 ORTHO05D003378 1.6e-10 69.7 110 35.5
SGA_v2.0_scaffold7G03794 Striga asiatica HOM05D005176 ORTHO05D006482 1.6e-10 69.7 91 37.4
COL.COLO4_26711 Corchorus olitorius HOM05D006508 ORTHO05D003378 2.1e-10 69.3 107 33.6
PSO210G2170 Papaver somniferum HOM05D000275 ORTHO05D003378 2.7e-10 68.9 114 33.3
Haze_06883 Corylus avellana HOM05D006508 ORTHO05D003378 3.6e-10 68.6 105 37.1
SEGI_03035 Sequoiadendron giganteum HOM05D000275 ORTHO05D000181 3.6e-10 68.6 109 33.9
Thecc.06G230300 Theobroma cacao HOM05D000275 ORTHO05D003378 3.6e-10 68.6 91 39.6
COL.COLO4_26709 Corchorus olitorius HOM05D006508 ORTHO05D003378 4.7e-10 68.2 107 33.6
Haze_06882 Corylus avellana HOM05D006508 ORTHO05D003378 6.1e-10 67.8 95 36.8
SEGI_16300 Sequoiadendron giganteum HOM05D000275 ORTHO05D000181 6.1e-10 67.8 96 36.5
Thecc.06G230500 Theobroma cacao HOM05D000275 ORTHO05D003378 6.1e-10 67.8 90 37.8
Phvul.005G045100 Phaseolus vulgaris HOM05D000275 ORTHO05D000181 8.0e-10 67.4 104 34.6
VMungo1080G1094 Vigna mungo HOM05D000275 ORTHO05D000181 1.0e-09 67.0 104 33.7
Sopen06g019870 Solanum pennellii HOM05D010533 ORTHO05D003378 1.8e-09 66.2 102 34.3
CiPaw.09G100300 Carya illinoinensis HOM05D006508 ORTHO05D003378 2.3e-09 65.9 86 38.4
COL.COLO4_17112 Corchorus olitorius HOM05D000275 ORTHO05D000181 2.3e-09 65.9 104 37.5
COL.COLO4_26721 Corchorus olitorius HOM05D006508 ORTHO05D003378 2.3e-09 65.9 107 32.7
Glyma.15G265900 Glycine max HOM05D000275 ORTHO05D000181 2.3e-09 65.9 108 36.1
Thecc.04G124500 Theobroma cacao HOM05D000275 ORTHO05D003378 2.3e-09 65.9 91 41.8
TWI38G1593 Tripterygium wilfordii HOM05D006508 ORTHO05D003378 2.3e-09 65.9 92 37.0
Migut.M01353 Erythranthe guttata HOM05D006508 ORTHO05D003378 3.0e-09 65.5 92 32.6
Eucgr.D01379 Eucalyptus grandis HOM05D000275 ORTHO05D003378 4.0e-09 65.1 90 35.6
Peaxi162Scf01343g00142 Petunia axillaris HOM05D000275 ORTHO05D000181 4.0e-09 65.1 108 35.2
Lalb_Chr12g0203601 Lupinus albus HOM05D006508 ORTHO05D003378 8.8e-09 63.9 116 31.9
Lalb_Chr20g0108251 Lupinus albus HOM05D000275 ORTHO05D000181 8.8e-09 63.9 107 29.9
ATR1128G035 Amborella trichopoda HOM05D000275 ORTHO05D003378 1.2e-08 63.5 108 33.3
FAN06G0058 Fragaria x ananassa HOM05D000275 ORTHO05D000181 1.2e-08 63.5 113 28.3
FAN06G4638 Fragaria x ananassa HOM05D000275 ORTHO05D000181 1.2e-08 63.5 113 28.3
Lalb_Chr07g0188481 Lupinus albus HOM05D000275 ORTHO05D003378 1.2e-08 63.5 112 31.2
Lsat_1_v5_gn_3_100760 Lactuca sativa HOM05D000275 ORTHO05D000181 1.5e-08 63.2 108 32.4
Manes.16G001900 Manihot esculenta HOM05D006508 ORTHO05D003378 1.5e-08 63.2 106 30.2
Nn1g07322 Nelumbo nucifera HOM05D000275 ORTHO05D003378 1.5e-08 63.2 107 35.5
CSS0044170 Camellia sinensis var. sinensis HOM05D000275 ORTHO05D000181 2.6e-08 62.4 107 31.8
Lalb_Chr15g0076251 Lupinus albus HOM05D000275 ORTHO05D000181 2.6e-08 62.4 110 35.5
MD10G1328900 Malus domestica HOM05D000275 ORTHO05D003378 2.6e-08 62.4 113 29.2
Solyc06g059790.4 Solanum lycopersicum HOM05D010533 ORTHO05D003378 2.6e-08 62.4 79 38.0
arahy.Tifrunner.gnm1.ann1.EB1W4P Arachis hypogaea HOM05D000275 ORTHO05D000181 3.4e-08 62.0 113 30.1
Lalb_Chr07g0188491 Lupinus albus HOM05D000275 ORTHO05D003378 3.4e-08 62.0 118 31.4
CSS0001255 Camellia sinensis var. sinensis HOM05D000275 ORTHO05D000181 4.4e-08 61.6 106 32.1
CANSAT11G2344 Cannabis sativa HOM05D000275 ORTHO05D000181 4.4e-08 61.6 113 33.6
Cfa000131 Carpinus fangiana HOM05D006508 ORTHO05D003378 4.4e-08 61.6 113 31.9
Thecc.06G230400 Theobroma cacao HOM05D006508 ORTHO05D003378 4.4e-08 61.6 91 36.3
Thecc.06G230600 Theobroma cacao HOM05D006508 ORTHO05D003378 4.4e-08 61.6 91 36.3
TWI38G1893 Tripterygium wilfordii HOM05D006508 ORTHO05D003378 4.4e-08 61.6 92 38.0
TWI38G2037 Tripterygium wilfordii HOM05D006508 ORTHO05D003378 4.4e-08 61.6 114 34.2
Haze_06893 Corylus avellana HOM05D006508 ORTHO05D003378 5.7e-08 61.2 97 37.1
TWI38G0468 Tripterygium wilfordii HOM05D000275 ORTHO05D003378 5.7e-08 61.2 112 31.2
ATR1098G106 Amborella trichopoda HOM05D000275 ORTHO05D000181 7.5e-08 60.8 115 35.7
Cfa000104 Carpinus fangiana HOM05D006508 ORTHO05D003378 9.8e-08 60.5 105 34.3
FvH4_3g01190 Fragaria vesca HOM05D000275 ORTHO05D003378 9.8e-08 60.5 115 32.2
Gohir.A07G075600 Gossypium hirsutum HOM05D000275 ORTHO05D003378 9.8e-08 60.5 108 31.5
SGA_v2.0_scaffold95G28758 Striga asiatica HOM05D000275 ORTHO05D000181 9.8e-08 60.5 111 33.3
Aa31LG5G22760 Aethionema arabicum HOM05D000275 ORTHO05D003378 1.3e-07 60.1 109 33.9
Eucgr.H04731 Eucalyptus grandis HOM05D000275 ORTHO05D000181 1.3e-07 60.1 106 32.1
Lalb_Chr07g0188511 Lupinus albus HOM05D000275 ORTHO05D003378 1.7e-07 59.7 113 31.0
PGSC0003DMG400045247 Solanum tuberosum HOM05D006508 ORTHO05D003378 1.7e-07 59.7 106 33.0
FvH4_7g10020 Fragaria vesca HOM05D000275 ORTHO05D000181 2.2e-07 59.3 113 27.4
Gorai.001G085000 Gossypium raimondii HOM05D000275 ORTHO05D003378 2.2e-07 59.3 106 29.2
Sabra09G0016700 Salix brachista HOM05D000275 ORTHO05D000181 2.2e-07 59.3 108 32.4
Aa31LG5G22840 Aethionema arabicum HOM05D006508 ORTHO05D003378 2.8e-07 58.9 82 35.4
arahy.Tifrunner.gnm1.ann1.JFR3PY Arachis hypogaea HOM05D000275 ORTHO05D000181 2.8e-07 58.9 85 31.8
FAN21G1243 Fragaria x ananassa HOM05D000275 ORTHO05D003378 2.8e-07 58.9 103 33.0
Gohir.D07G080100 Gossypium hirsutum HOM05D000275 ORTHO05D003378 2.8e-07 58.9 106 29.2
PGR042G3528 Punica granatum HOM05D000275 ORTHO05D000181 2.8e-07 58.9 103 33.0
AL3G47090 Arabidopsis lyrata HOM05D000275 ORTHO05D003378 3.7e-07 58.5 113 31.0
Nitab4.5_0001198g0250 Nicotiana tabacum HOM05D006508 ORTHO05D003378 3.7e-07 58.5 105 33.3
Os03g0808500 Oryza sativa ssp. japonica HOM05D000275 ORTHO05D003378 3.7e-07 58.5 91 31.9
Cfa010681 Carpinus fangiana HOM05D000275 ORTHO05D000181 4.8e-07 58.2 111 29.7
ClCG09G003610 Citrullus lanatus HOM05D000275 ORTHO05D000181 4.8e-07 58.2 101 32.7
Migut.M01349 Erythranthe guttata HOM05D000275 ORTHO05D003378 6.3e-07 57.8 108 31.5
Thhalv10002292m.g Eutrema salsugineum HOM05D000275 ORTHO05D003378 6.3e-07 57.8 80 35.0
Nn2g13360 Nelumbo nucifera HOM05D000275 ORTHO05D003378 6.3e-07 57.8 105 32.4
Prupe.2G000900 Prunus persica HOM05D000275 ORTHO05D000181 6.3e-07 57.8 101 31.7
CiPaw.09G100900 Carya illinoinensis HOM05D006508 ORTHO05D003378 8.3e-07 57.4 106 30.2
MELO3C023497.2 Cucumis melo HOM05D000275 ORTHO05D000181 1.1e-06 57.0 111 32.4
Dinv20121 Davidia involucrata HOM05D006508 ORTHO05D003378 1.1e-06 57.0 111 31.5
Medtr3g046443 Medicago truncatula HOM05D006508 ORTHO05D003378 1.1e-06 57.0 114 31.6
Os06g0539500 Oryza sativa ssp. japonica HOM05D000275 ORTHO05D000181 1.1e-06 57.0 117 34.2
Aa31LG5G22780 Aethionema arabicum HOM05D000275 ORTHO05D003378 1.4e-06 56.6 108 32.4
Migut.M01356 Erythranthe guttata HOM05D000275 ORTHO05D003378 1.4e-06 56.6 108 30.6
FAN21G0761 Fragaria x ananassa HOM05D000275 ORTHO05D003378 1.4e-06 56.6 94 34.0
Potri.009G025200 Populus trichocarpa HOM05D000275 ORTHO05D000181 1.4e-06 56.6 99 33.3
RcHm_v2.0_Chr5g0047311 Rosa chinensis HOM05D006508 ORTHO05D003378 1.8e-06 56.2 107 29.0
Sp6g04760 Schrenkiella parvula HOM05D011686 ORTHO05D014051 1.8e-06 56.2 90 31.1
Hma1.2p1_0128F.1_g059960 Hydrangea macrophylla HOM05D000275 ORTHO05D000181 2.4e-06 55.8 107 29.0
QL04p000796 Quercus lobata HOM05D000275 ORTHO05D000181 2.4e-06 55.8 106 29.2
TPR.G39085 Trifolium pratense HOM05D006508 ORTHO05D003378 2.4e-06 55.8 120 29.2
Aa31LG5G22790 Aethionema arabicum HOM05D000275 ORTHO05D003378 3.1e-06 55.5 108 31.5
vmacro22473 Vaccinium macrocarpon HOM05D000275 ORTHO05D000181 3.1e-06 55.5 108 30.6
HPP92_019919 Vanilla planifolia HOM05D000275 ORTHO05D003378 3.1e-06 55.5 112 28.6
AT2G15325 Arabidopsis thaliana HOM05D000275 ORTHO05D003378 4.1e-06 55.1 109 32.1
CsaV3_7G031570 Cucumis sativus L. HOM05D000275 ORTHO05D000181 5.4e-06 54.7 109 30.3
Dinv20118 Davidia involucrata HOM05D006508 ORTHO05D003378 5.4e-06 54.7 111 28.8
Nitab4.5_0004082g0030 Nicotiana tabacum HOM05D010533 ORTHO05D003378 5.4e-06 54.7 58 41.4
RcHm_v2.0_Chr5g0001761 Rosa chinensis HOM05D000275 ORTHO05D003378 5.4e-06 54.7 117 32.5
Sc18g0007010 Simmondsia chinensis HOM05D000275 ORTHO05D003378 5.4e-06 54.7 91 35.2
TPR.G25291 Trifolium pratense HOM05D000275 ORTHO05D003378 5.4e-06 54.7 112 29.5
Dinv07381 Davidia involucrata HOM05D006508 ORTHO05D003378 9.1e-06 53.9 107 29.0
Dinv20120 Davidia involucrata HOM05D006508 ORTHO05D003378 9.1e-06 53.9 107 29.0


User provided reference genes

Program Settings