Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen10g005880 Solanum pennellii HOM05D010533 ORTHO05D003378 7.9e-61 236.9 116 100.0
Solyc10g012120.1 Solanum lycopersicum HOM05D010533 ORTHO05D003378 2.9e-55 218.4 112 94.6
PGSC0003DMG400036647 Solanum tuberosum HOM05D010533 ORTHO05D003378 1.8e-52 209.1 112 89.3
Sopen10g005870 Solanum pennellii HOM05D010533 ORTHO05D003378 3.3e-43 178.3 113 73.5
PGSC0003DMG400035278 Solanum tuberosum HOM05D010533 ORTHO05D003378 1.3e-42 176.4 112 74.1
Solyc10g012110.3 Solanum lycopersicum HOM05D010533 ORTHO05D003378 1.4e-41 172.9 112 72.3
PGSC0003DMG400041307 Solanum tuberosum HOM05D010533 ORTHO05D003378 2.6e-35 152.1 112 62.5
PGSC0003DMG400044023 Solanum tuberosum HOM05D010533 ORTHO05D003378 2.6e-35 152.1 113 65.5
PGSC0003DMG400038800 Solanum tuberosum HOM05D010533 ORTHO05D003378 2.8e-34 148.7 115 66.1
Sopen10g005900 Solanum pennellii HOM05D010533 ORTHO05D003378 8.2e-34 147.1 111 63.1
Solyc10g012130.1 Solanum lycopersicum HOM05D010533 ORTHO05D003378 1.4e-33 146.4 111 63.1
CAN.G650.39 Capsicum annuum HOM05D010533 ORTHO05D003378 3.6e-29 131.7 111 58.6
Peaxi162Scf00008g00288 Petunia axillaris HOM05D010533 ORTHO05D003378 9.1e-25 117.1 99 58.6
Peaxi162Scf00066g00202 Petunia axillaris HOM05D010533 ORTHO05D003378 5.2e-20 101.3 108 48.1
Oeu043634.1 Olea europaea HOM05D010533 ORTHO05D003378 9.7e-19 97.1 104 50.0
Nitab4.5_0001821g0020 Nicotiana tabacum HOM05D000275 ORTHO05D003378 7.0e-17 90.9 110 43.6
Nitab4.5_0010416g0010 Nicotiana tabacum HOM05D000275 ORTHO05D003378 5.9e-16 87.8 94 47.9
Peaxi162Scf00033g00043 Petunia axillaris HOM05D000275 ORTHO05D003378 1.0e-15 87.0 110 44.5
SalBow8G5319 Salvia bowleyana HOM05D010533 ORTHO05D003378 1.7e-15 86.3 104 39.4
TAR626G1122 Trochodendron aralioides HOM05D000275 ORTHO05D003378 3.6e-13 78.6 109 42.2
Migut.M01357 Erythranthe guttata HOM05D010533 ORTHO05D003378 4.7e-13 78.2 92 41.3
PSO832G3328 Papaver somniferum HOM05D000275 ORTHO05D003378 1.4e-12 76.6 112 37.5
Sopen06g019870 Solanum pennellii HOM05D010533 ORTHO05D003378 3.0e-12 75.5 104 39.4
TAR629G3202 Trochodendron aralioides HOM05D000275 ORTHO05D003378 5.2e-12 74.7 110 41.8
PSO210G2170 Papaver somniferum HOM05D000275 ORTHO05D003378 2.0e-11 72.8 117 34.2
CiPaw.09G100300 Carya illinoinensis HOM05D006508 ORTHO05D003378 4.4e-11 71.6 88 38.6
TAR629G2992 Trochodendron aralioides HOM05D006508 ORTHO05D003378 4.4e-11 71.6 107 39.3
Migut.M01353 Erythranthe guttata HOM05D006508 ORTHO05D003378 7.5e-11 70.9 108 36.1
Manes.16G001900 Manihot esculenta HOM05D006508 ORTHO05D003378 2.8e-10 68.9 103 35.0
Peaxi162Scf00395g00012 Petunia axillaris HOM05D000275 ORTHO05D010802 2.8e-10 68.9 104 42.3
Phvul.005G045100 Phaseolus vulgaris HOM05D000275 ORTHO05D000181 2.8e-10 68.9 105 35.2
Glyma.15G265900 Glycine max HOM05D000275 ORTHO05D000181 3.7e-10 68.6 109 34.9
Thecc.06G008800 Theobroma cacao HOM05D000275 ORTHO05D010802 3.7e-10 68.6 109 34.9
VMungo1080G1094 Vigna mungo HOM05D000275 ORTHO05D000181 3.7e-10 68.6 105 34.3
SEGI_29008 Sequoiadendron giganteum HOM05D000275 ORTHO05D000181 6.3e-10 67.8 92 34.8
Actinidia12821 Actinidia chinensis HOM05D000275 ORTHO05D003378 8.3e-10 67.4 107 35.5
Haze_06883 Corylus avellana HOM05D006508 ORTHO05D003378 1.1e-09 67.0 89 39.3
Nitab4.5_0002819g0020 Nicotiana tabacum HOM05D000275 ORTHO05D010802 1.1e-09 67.0 115 40.0
Solyc06g059790.4 Solanum lycopersicum HOM05D010533 ORTHO05D003378 1.4e-09 66.6 81 43.2
TPR.G17317 Trifolium pratense HOM05D000275 ORTHO05D000181 1.4e-09 66.6 108 31.5
Ciclev10018268m.g Citrus clementina HOM05D000275 ORTHO05D003378 1.8e-09 66.2 117 34.2
COL.COLO4_26881 Corchorus olitorius HOM05D000275 ORTHO05D010802 1.8e-09 66.2 115 33.9
Dinv20121 Davidia involucrata HOM05D006508 ORTHO05D003378 1.8e-09 66.2 111 35.1
Lalb_Chr20g0108251 Lupinus albus HOM05D000275 ORTHO05D000181 1.8e-09 66.2 108 31.5
Oeu000504.1 Olea europaea HOM05D000275 ORTHO05D010802 1.8e-09 66.2 111 40.5
Eucgr.D01379 Eucalyptus grandis HOM05D000275 ORTHO05D003378 2.4e-09 65.9 88 34.1
COL.COLO4_26882 Corchorus olitorius HOM05D000275 ORTHO05D010802 4.1e-09 65.1 108 34.3
Dinv20118 Davidia involucrata HOM05D006508 ORTHO05D003378 4.1e-09 65.1 113 31.9
Duzib160G0260 Durio zibethinus HOM05D000275 ORTHO05D010802 4.1e-09 65.1 110 33.6
CiPaw.09G101000 Carya illinoinensis HOM05D000275 ORTHO05D003378 5.4e-09 64.7 106 34.0
Thecc.06G230300 Theobroma cacao HOM05D000275 ORTHO05D003378 5.4e-09 64.7 110 33.6
Thecc.06G230500 Theobroma cacao HOM05D000275 ORTHO05D003378 5.4e-09 64.7 85 37.6
TAR374G1222 Trochodendron aralioides HOM05D000275 ORTHO05D000181 5.4e-09 64.7 106 35.8
CiPaw.09G100400 Carya illinoinensis HOM05D006508 ORTHO05D003378 7.0e-09 64.3 85 37.6
Haze_06882 Corylus avellana HOM05D006508 ORTHO05D003378 7.0e-09 64.3 91 40.7
FAN06G4638 Fragaria x ananassa HOM05D000275 ORTHO05D000181 7.0e-09 64.3 109 31.2
SGA_v2.0_scaffold7G03794 Striga asiatica HOM05D005176 ORTHO05D006482 7.0e-09 64.3 94 34.0
CiPaw.09G100800 Carya illinoinensis HOM05D000275 ORTHO05D003378 9.1e-09 63.9 106 34.9
FvH4_7g10020 Fragaria vesca HOM05D000275 ORTHO05D000181 9.1e-09 63.9 109 31.2
FAN06G0058 Fragaria x ananassa HOM05D000275 ORTHO05D000181 9.1e-09 63.9 109 31.2
Nn2g13360 Nelumbo nucifera HOM05D000275 ORTHO05D003378 9.1e-09 63.9 102 36.3
Psat6g066360 Pisum sativum HOM05D006508 ORTHO05D003378 9.1e-09 63.9 89 37.1
Lalb_Chr12g0203611 Lupinus albus HOM05D006508 ORTHO05D003378 1.2e-08 63.5 113 31.9
Sc20g0006920 Simmondsia chinensis HOM05D000275 ORTHO05D000181 1.2e-08 63.5 112 33.0
GSVIVG01021772001 Vitis vinifera HOM05D000275 ORTHO05D010802 1.2e-08 63.5 108 36.1
Gorai.008G229100 Gossypium raimondii HOM05D000275 ORTHO05D000181 1.6e-08 63.2 103 35.0
Psat0s5273g0040 Pisum sativum HOM05D006508 ORTHO05D003378 1.6e-08 63.2 89 37.1
Rhsim07G0048700 Rhododendron simsii HOM05D000275 ORTHO05D000181 1.6e-08 63.2 108 33.3
Gohir.D12G213500 Gossypium hirsutum HOM05D000275 ORTHO05D000181 2.7e-08 62.4 103 35.0
Medtr0071s0070 Medicago truncatula HOM05D006508 ORTHO05D003378 2.7e-08 62.4 90 36.7
Nitab4.5_0004734g0020 Nicotiana tabacum HOM05D000275 ORTHO05D010802 2.7e-08 62.4 115 39.1
Cpa.g.c30210.2 Carica papaya HOM05D000275 ORTHO05D010802 3.5e-08 62.0 110 31.8
Glyma.08G161700 Glycine max HOM05D000275 ORTHO05D000181 3.5e-08 62.0 96 33.3
TAR636G0501 Trochodendron aralioides HOM05D000275 ORTHO05D000181 4.5e-08 61.6 114 31.6
Cpa.g.sc228.23 Carica papaya HOM05D000275 ORTHO05D000181 5.9e-08 61.2 108 32.4
Oeu063154.1 Olea europaea HOM05D000275 ORTHO05D010802 5.9e-08 61.2 115 36.5
Ciclev10033098m.g Citrus clementina HOM05D000275 ORTHO05D000181 7.7e-08 60.8 109 30.3
Cc09_g07350 Coffea canephora HOM05D000275 ORTHO05D010802 7.7e-08 60.8 114 36.0
FAN03G2574 Fragaria x ananassa HOM05D000275 ORTHO05D000181 1.0e-07 60.5 111 27.9
Medtr2g062600 Medicago truncatula HOM05D000275 ORTHO05D000181 1.0e-07 60.5 106 31.1
Medtr3g046580 Medicago truncatula HOM05D006508 ORTHO05D003378 1.0e-07 60.5 91 35.2
PGR042G3528 Punica granatum HOM05D000275 ORTHO05D000181 1.0e-07 60.5 105 35.2
Cpa.g.sc489.7 Carica papaya HOM05D000275 ORTHO05D010802 1.3e-07 60.1 107 32.7
Migut.M01927 Erythranthe guttata HOM05D000275 ORTHO05D010802 1.3e-07 60.1 119 36.1
DCAR_005642 Daucus carota HOM05D000275 ORTHO05D010802 1.7e-07 59.7 110 31.8
Manes.14G126100 Manihot esculenta HOM05D000275 ORTHO05D010802 1.7e-07 59.7 110 30.9
Lalb_Chr12g0203601 Lupinus albus HOM05D006508 ORTHO05D003378 2.3e-07 59.3 113 30.1
Medtr3g046590 Medicago truncatula HOM05D006508 ORTHO05D003378 2.3e-07 59.3 90 35.6
TAR624G0945 Trochodendron aralioides HOM05D000275 ORTHO05D010802 2.3e-07 59.3 108 35.2
Cfa000132 Carpinus fangiana HOM05D006508 ORTHO05D003378 2.9e-07 58.9 111 36.9
Gohir.A07G075600 Gossypium hirsutum HOM05D000275 ORTHO05D003378 2.9e-07 58.9 112 32.1
Os06g0539500 Oryza sativa ssp. japonica HOM05D000275 ORTHO05D000181 2.9e-07 58.9 114 35.1
Solyc08g067520.1 Solanum lycopersicum HOM05D000275 ORTHO05D000181 2.9e-07 58.9 95 34.7
SGA_v2.0_scaffold51G18665 Striga asiatica HOM05D000275 ORTHO05D010802 2.9e-07 58.9 108 35.2
Atru.chr11.2720 Acer truncatum HOM05D000275 ORTHO05D000181 3.8e-07 58.5 110 28.2
Os03g0808500 Oryza sativa ssp. japonica HOM05D000275 ORTHO05D003378 3.8e-07 58.5 92 32.6
Cfa000104 Carpinus fangiana HOM05D006508 ORTHO05D003378 5.0e-07 58.2 111 36.0
Gohir.D07G080100 Gossypium hirsutum HOM05D000275 ORTHO05D003378 5.0e-07 58.2 110 30.0
Lalb_Chr12g0203591 Lupinus albus HOM05D006508 ORTHO05D003378 5.0e-07 58.2 115 28.7
Manes.12G052803 Manihot esculenta HOM05D006508 ORTHO05D003378 5.0e-07 58.2 88 37.5
Medtr3g046530 Medicago truncatula HOM05D006508 ORTHO05D003378 5.0e-07 58.2 90 34.4
Nitab4.5_0004082g0030 Nicotiana tabacum HOM05D010533 ORTHO05D003378 5.0e-07 58.2 52 50.0
Nitab4.5_0016619g0010 Nicotiana tabacum HOM05D000275 ORTHO05D010802 5.0e-07 58.2 107 38.3
TWI32G0556 Tripterygium wilfordii HOM05D000275 ORTHO05D010802 5.0e-07 58.2 107 33.6
Migut.M01349 Erythranthe guttata HOM05D000275 ORTHO05D003378 6.6e-07 57.8 109 31.2
Gohir.D05G112700 Gossypium hirsutum HOM05D000275 ORTHO05D010802 6.6e-07 57.8 106 32.1
Manes.12G052802 Manihot esculenta HOM05D006508 ORTHO05D003378 6.6e-07 57.8 110 30.9
Prupe.4G217000 Prunus persica HOM05D000275 ORTHO05D003378 6.6e-07 57.8 113 31.9
Ah.08g209500 Amaranthus hybridus HOM05D000275 ORTHO05D000181 8.6e-07 57.4 113 31.9
CiPaw.02G040200 Carya illinoinensis HOM05D000275 ORTHO05D000181 8.6e-07 57.4 89 37.1
Potri.011G021900 Populus trichocarpa HOM05D000275 ORTHO05D003378 8.6e-07 57.4 86 32.6
PGR083G1828 Punica granatum HOM05D000275 ORTHO05D010802 8.6e-07 57.4 111 32.4
Migut.M01350 Erythranthe guttata HOM05D000275 ORTHO05D003378 1.1e-06 57.0 114 30.7
FAN24G0993 Fragaria x ananassa HOM05D006508 ORTHO05D003378 1.1e-06 57.0 82 36.6
Lalb_Chr07g0188491 Lupinus albus HOM05D000275 ORTHO05D003378 1.1e-06 57.0 121 31.4
Medtr3g046540 Medicago truncatula HOM05D006508 ORTHO05D003378 1.1e-06 57.0 90 33.3
HPP92_021879 Vanilla planifolia HOM05D006508 ORTHO05D003378 1.1e-06 57.0 88 36.4
AUR62023470 Chenopodium quinoa HOM05D000275 ORTHO05D000181 1.5e-06 56.6 104 32.7
Migut.M01356 Erythranthe guttata HOM05D000275 ORTHO05D003378 1.5e-06 56.6 110 29.1
Hma1.2p1_0071F.1_g037800 Hydrangea macrophylla HOM05D000275 ORTHO05D010802 1.5e-06 56.6 108 35.2
Medtr3g046515 Medicago truncatula HOM05D006508 ORTHO05D003378 1.5e-06 56.6 87 34.5
Potri.011G022150 Populus trichocarpa HOM05D006508 ORTHO05D003378 1.5e-06 56.6 115 33.9
CiPaw.09G100900 Carya illinoinensis HOM05D006508 ORTHO05D003378 1.9e-06 56.2 100 33.0
Haze_06893 Corylus avellana HOM05D006508 ORTHO05D003378 1.9e-06 56.2 88 39.8
Migut.M01355 Erythranthe guttata HOM05D000275 ORTHO05D003378 1.9e-06 56.2 88 34.1
MD06G1106500 Malus domestica HOM05D009669 ORTHO05D000181 2.5e-06 55.8 90 36.7
HPP92_019919 Vanilla planifolia HOM05D000275 ORTHO05D003378 2.5e-06 55.8 110 32.7
Dinv06441 Davidia involucrata HOM05D000275 ORTHO05D010802 3.3e-06 55.5 116 34.5
Gorai.001G085000 Gossypium raimondii HOM05D000275 ORTHO05D003378 3.3e-06 55.5 106 30.2
Manes.12G053200 Manihot esculenta HOM05D006508 ORTHO05D003378 3.3e-06 55.5 116 31.9
unitig_699.g19590 Utricularia gibba HOM05D000275 ORTHO05D000181 3.3e-06 55.5 111 31.5
RcHm_v2.0_Chr6g0247621 Rosa chinensis HOM05D006508 ORTHO05D003378 4.2e-06 55.1 83 33.7
PGSC0003DMG400025539 Solanum tuberosum HOM05D000275 ORTHO05D000181 4.2e-06 55.1 117 29.1
THA.LOC104811597 Tarenaya hassleriana HOM05D000275 ORTHO05D000181 4.2e-06 55.1 119 33.6
CSS0009125 Camellia sinensis var. sinensis HOM05D000275 ORTHO05D003378 5.5e-06 54.7 92 37.0
CSS0012199 Camellia sinensis var. sinensis HOM05D000275 ORTHO05D003378 5.5e-06 54.7 89 40.4
CSS0031389 Camellia sinensis var. sinensis HOM05D000275 ORTHO05D003378 5.5e-06 54.7 89 40.4
Gohir.A05G112400 Gossypium hirsutum HOM05D000275 ORTHO05D010802 5.5e-06 54.7 109 29.4
Gohir.D05G112800 Gossypium hirsutum HOM05D000275 ORTHO05D010802 5.5e-06 54.7 109 29.4
AUR62004483 Chenopodium quinoa HOM05D000275 ORTHO05D000181 7.2e-06 54.3 105 31.4
FvH4_2g02840 Fragaria vesca HOM05D006508 ORTHO05D003378 7.2e-06 54.3 82 35.4
Gohir.A07G075700 Gossypium hirsutum HOM05D006508 ORTHO05D003378 7.2e-06 54.3 84 34.5
Gorai.009G117000 Gossypium raimondii HOM05D000275 ORTHO05D010802 7.2e-06 54.3 109 29.4
Manes.13G059000 Manihot esculenta HOM05D000275 ORTHO05D003378 9.5e-06 53.9 97 29.9


User provided reference genes

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