Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen10g004190 Solanum pennellii HOM05D008409 ORTHO05D010483 8.0e-82 307.0 150 100.0
Solyc10g008330.4 Solanum lycopersicum HOM05D008409 ORTHO05D010483 7.8e-77 290.4 150 95.3
PGSC0003DMG400013143 Solanum tuberosum HOM05D008409 ORTHO05D010483 4.4e-72 274.6 150 90.0
CAN.G578.4 Capsicum annuum HOM05D008409 ORTHO05D010483 3.0e-60 235.3 143 81.8
Peaxi162Scf00059g01918 Petunia axillaris HOM05D008409 ORTHO05D010483 1.9e-59 232.6 145 77.9
Haze_13167 Corylus avellana HOM05D008409 ORTHO05D010483 1.2e-53 213.4 148 68.9
QL08p038864 Quercus lobata HOM05D008409 ORTHO05D010483 4.6e-53 211.5 148 69.6
MELO3C018733.2 Cucumis melo HOM05D008409 ORTHO05D010483 3.9e-52 208.4 146 63.7
Nitab4.5_0009473g0020 Nicotiana tabacum HOM05D008409 ORTHO05D010483 5.1e-52 208.0 152 70.4
ClCG07G002880 Citrullus lanatus HOM05D008409 ORTHO05D010483 1.1e-51 206.8 146 64.4
CiPaw.04G126300 Carya illinoinensis HOM05D008409 ORTHO05D010483 1.9e-51 206.1 148 66.2
Sed0018099 Sechium edule HOM05D008409 ORTHO05D010483 4.3e-51 204.9 146 63.0
CsaV3_7G004460 Cucumis sativus L. HOM05D008409 ORTHO05D010483 2.1e-50 202.6 146 62.3
Thecc.02G180200 Theobroma cacao HOM05D008409 ORTHO05D010483 3.6e-50 201.8 145 66.9
PGR142G1945 Punica granatum HOM05D008409 ORTHO05D010483 8.1e-50 200.7 146 63.7
Potri.013G131000 Populus trichocarpa HOM05D008409 ORTHO05D010483 1.1e-49 200.3 148 64.9
Nn1g06548 Nelumbo nucifera HOM05D008409 ORTHO05D010483 2.4e-49 199.1 146 63.7
Manes.12G089218 Manihot esculenta HOM05D008409 ORTHO05D010483 5.2e-49 198.0 145 63.4
TAR627G0101 Trochodendron aralioides HOM05D008409 ORTHO05D010483 5.2e-49 198.0 145 64.8
GSVIVG01020550001 Vitis vinifera HOM05D008409 ORTHO05D010483 6.9e-49 197.6 148 64.9
Aqoxy1G02429 Aquilegia oxysepala HOM05D008409 ORTHO05D010483 1.5e-48 196.4 149 63.8
Ciclev10017070m.g Citrus clementina HOM05D008409 ORTHO05D010483 1.5e-48 196.4 146 64.4
Actinidia11031 Actinidia chinensis HOM05D008409 ORTHO05D010483 2.6e-48 195.7 146 63.0
Sabra13G0110600 Salix brachista HOM05D008409 ORTHO05D010483 2.6e-48 195.7 151 62.9
Atru.chr6.2992 Acer truncatum HOM05D008409 ORTHO05D010483 7.6e-48 194.1 146 62.3
MD09G1247200 Malus domestica HOM05D008409 ORTHO05D010483 2.9e-47 192.2 148 62.2
PSO675G8696 Papaver somniferum HOM05D008409 ORTHO05D010483 1.9e-46 189.5 146 64.4
Gorai.012G128600 Gossypium raimondii HOM05D008409 ORTHO05D010483 3.2e-46 188.7 146 60.3
Gohir.A04G103600 Gossypium hirsutum HOM05D008409 ORTHO05D010483 1.2e-45 186.8 146 59.6
Os08g0374000 Oryza sativa ssp. japonica HOM05D008409 ORTHO05D010483 2.1e-45 186.0 145 59.3
PSO541G0816 Papaver somniferum HOM05D008409 ORTHO05D010483 2.1e-45 186.0 146 63.0
Gohir.D04G143000 Gossypium hirsutum HOM05D008409 ORTHO05D010483 7.8e-45 184.1 146 59.6
COL.COLO4_30195 Corchorus olitorius HOM05D008409 ORTHO05D010483 9.6e-43 177.2 134 61.9
TWI36G0630 Tripterygium wilfordii HOM05D008409 ORTHO05D010483 1.3e-42 176.8 147 55.8
MBI06_g04179_MAGBIO Magnolia biondii HOM05D008409 ORTHO05D010483 6.2e-42 174.5 149 58.4
ATR0737G133 Amborella trichopoda HOM05D008409 ORTHO05D010483 1.4e-41 173.3 144 56.2
CSS0031688 Camellia sinensis var. sinensis HOM05D008409 ORTHO05D010483 4.2e-38 161.8 143 59.4
SEGI_00232 Sequoiadendron giganteum HOM05D008409 ORTHO05D010483 3.5e-37 158.7 143 51.7
Dinv23634 Davidia involucrata HOM05D008409 ORTHO05D010483 3.7e-34 148.7 101 71.3
vmacro12306 Vaccinium macrocarpon HOM05D008409 ORTHO05D010483 9.0e-33 144.1 112 60.7
QL08p038938 Quercus lobata HOM05D008409 ORTHO05D010483 6.2e-26 121.3 91 64.8
Pp3c8_12660 Physcomitrium patens HOM05D008409 ORTHO05D010483 3.7e-10 68.9 118 30.5
Duzib268G1105 Durio zibethinus HOM05D000197 ORTHO05D000114 4.8e-10 68.6 153 33.3
Ciclev10032973m.g Citrus clementina HOM05D000197 ORTHO05D000114 1.1e-09 67.4 150 30.7
ECA246G2358 Erigeron canadensis HOM05D000197 ORTHO05D000114 1.4e-09 67.0 146 28.1
Pp3c13_23010 Physcomitrium patens HOM05D012277 ORTHO05D010483 1.4e-09 67.0 135 31.9
Pp3c13_23030 Physcomitrium patens HOM05D012277 ORTHO05D010483 1.4e-09 67.0 135 31.9
Manes.05G090000 Manihot esculenta HOM05D000197 ORTHO05D000114 2.4e-09 66.2 146 28.8
vmacro16271 Vaccinium macrocarpon HOM05D000197 ORTHO05D000114 3.1e-09 65.9 150 29.3
Lsat_1_v5_gn_3_48941 Lactuca sativa HOM05D000197 ORTHO05D000114 6.9e-09 64.7 146 30.1
Actinidia15014 Actinidia chinensis HOM05D000197 ORTHO05D000114 1.2e-08 63.9 142 31.7
SMO347G0071 Selaginella moellendorffii HOM05D008409 ORTHO05D010483 1.2e-08 63.9 152 28.3
MD13G1088200 Malus domestica HOM05D000197 ORTHO05D000114 1.5e-08 63.5 143 29.4
vmacro16272 Vaccinium macrocarpon HOM05D000197 ORTHO05D000114 1.5e-08 63.5 144 31.2
FAN07G2092 Fragaria x ananassa HOM05D000197 ORTHO05D000114 4.5e-08 62.0 148 29.7
Pp3c7_19830 Physcomitrium patens HOM05D012277 ORTHO05D010483 5.9e-08 61.6 136 28.7
Pp3c7_19850 Physcomitrium patens HOM05D012277 ORTHO05D010483 5.9e-08 61.6 136 28.7
Manes.15G130000 Manihot esculenta HOM05D000197 ORTHO05D000114 7.7e-08 61.2 153 28.8
CSS0039522 Camellia sinensis var. sinensis HOM05D000197 ORTHO05D000114 1.0e-07 60.8 148 29.1
FAN17G2379 Fragaria x ananassa HOM05D000197 ORTHO05D000114 1.0e-07 60.8 148 29.1
Mapoly0131s0013 Marchantia polymorpha HOM05D008409 ORTHO05D010483 1.0e-07 60.8 138 30.4
FvH4_4g34890 Fragaria vesca HOM05D000197 ORTHO05D000114 1.7e-07 60.1 148 29.1
FAN12G1601 Fragaria x ananassa HOM05D000197 ORTHO05D000114 1.7e-07 60.1 148 29.1
HanXRQChr17g0563811 Helianthus annuus HOM05D000197 ORTHO05D000114 1.7e-07 60.1 146 27.4
Lsat_1_v5_gn_5_100541 Lactuca sativa HOM05D000197 ORTHO05D000114 1.7e-07 60.1 136 29.4
RcHm_v2.0_Chr4g0444321 Rosa chinensis HOM05D000197 ORTHO05D000114 1.7e-07 60.1 148 29.7
MSTRG.2155 Avicennia marina HOM05D000197 ORTHO05D000114 2.2e-07 59.7 118 31.4
HanXRQChr11g0351041 Helianthus annuus HOM05D000197 ORTHO05D000114 2.2e-07 59.7 146 27.4
Lj6C802G2 Lonicera japonica HOM05D000197 ORTHO05D000114 2.2e-07 59.7 138 31.2
MD16G1088600 Malus domestica HOM05D000197 ORTHO05D000114 2.2e-07 59.7 151 25.8
unitig_22.g6474 Utricularia gibba HOM05D000197 ORTHO05D000114 3.8e-07 58.9 146 28.1
Lsat_1_v5_gn_5_100601 Lactuca sativa HOM05D000197 ORTHO05D000114 5.0e-07 58.5 136 27.9
Haze_10961 Corylus avellana HOM05D000197 ORTHO05D000114 6.5e-07 58.2 135 31.1
PGR119G0429 Punica granatum HOM05D000197 ORTHO05D000114 8.5e-07 57.8 129 26.4
CsaV3_5G031770 Cucumis sativus L. HOM05D000197 ORTHO05D000114 1.9e-06 56.6 145 30.3
Peaxi162Scf00815g00012 Petunia axillaris HOM05D000197 ORTHO05D000114 1.9e-06 56.6 142 26.1
GSVIVG01011726001 Vitis vinifera HOM05D000197 ORTHO05D000114 4.2e-06 55.5 140 30.0
CiPaw.06G046600 Carya illinoinensis HOM05D000197 ORTHO05D000114 5.5e-06 55.1 140 27.1
Lj3A868T13 Lonicera japonica HOM05D000197 ORTHO05D000114 5.5e-06 55.1 127 29.1


User provided reference genes

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