Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen10g003020 Solanum pennellii HOM05D005433 ORTHO05D006675 6.1e-147 524.2 285 100.0
Solyc10g007120.4 Solanum lycopersicum HOM05D005433 ORTHO05D006675 1.4e-140 503.1 285 96.8
PGSC0003DMG400021311 Solanum tuberosum HOM05D005433 ORTHO05D006675 1.4e-135 486.5 285 93.0
Nitab4.5_0001208g0170 Nicotiana tabacum HOM05D005433 ORTHO05D006675 3.0e-122 442.2 292 85.3
Nitab4.5_0005232g0030 Nicotiana tabacum HOM05D005433 ORTHO05D006675 1.3e-120 436.8 292 84.9
CAN.G1119.17 Capsicum annuum HOM05D005433 ORTHO05D006675 2.6e-113 412.5 284 82.4
Peaxi162Scf00027g01311 Petunia axillaris HOM05D005433 ORTHO05D006675 6.2e-99 364.8 286 73.8
TAR624G0745 Trochodendron aralioides HOM05D005433 ORTHO05D006675 6.6e-77 291.6 294 60.9
Cc05_g11610 Coffea canephora HOM05D005433 ORTHO05D006675 1.9e-76 290.0 277 62.8
CSS0020446 Camellia sinensis var. sinensis HOM05D005433 ORTHO05D006675 4.7e-75 285.4 292 60.6
GSVIVG01014263001 Vitis vinifera HOM05D005433 ORTHO05D006675 7.1e-71 271.6 290 57.9
CiPaw.12G116900 Carya illinoinensis HOM05D005433 ORTHO05D006675 3.5e-70 269.2 298 56.0
PGR083G2284 Punica granatum HOM05D005433 ORTHO05D006675 1.0e-69 267.7 286 58.4
QL08p023594 Quercus lobata HOM05D005433 ORTHO05D006675 2.5e-68 263.1 290 55.2
Hma1.2p1_0416F.1_g148475 Hydrangea macrophylla HOM05D005433 ORTHO05D006675 4.3e-68 262.3 237 63.3
TWI38G0185 Tripterygium wilfordii HOM05D005433 ORTHO05D006675 4.3e-68 262.3 294 54.4
MD03G1235600 Malus domestica HOM05D005433 ORTHO05D006675 9.6e-68 261.2 296 57.4
Rhsim04G0023000 Rhododendron simsii HOM05D005433 ORTHO05D006675 1.3e-67 260.8 291 57.7
Eucgr.F01178 Eucalyptus grandis HOM05D005433 ORTHO05D006675 1.6e-67 260.4 223 65.5
Nn1g06380 Nelumbo nucifera HOM05D005433 ORTHO05D006675 1.4e-66 257.3 291 55.3
Cfa020622 Carpinus fangiana HOM05D005433 ORTHO05D006675 1.8e-66 256.9 294 53.4
Ciclev10009151m.g Citrus clementina HOM05D005433 ORTHO05D006675 1.8e-66 256.9 287 57.1
PSO675G6755 Papaver somniferum HOM05D005433 ORTHO05D006675 5.3e-66 255.4 229 64.2
SalBow8G0584 Salvia bowleyana HOM05D005433 ORTHO05D006675 6.9e-66 255.0 284 54.9
Actinidia35236 Actinidia chinensis HOM05D005433 ORTHO05D006675 9.0e-66 254.6 290 55.9
Lsat_1_v5_gn_5_127421 Lactuca sativa HOM05D005433 ORTHO05D006675 1.2e-65 254.2 265 59.6
RcHm_v2.0_Chr5g0032261 Rosa chinensis HOM05D005433 ORTHO05D006675 2.0e-65 253.4 294 56.5
ClCG05G009210 Citrullus lanatus HOM05D005433 ORTHO05D006675 2.6e-65 253.1 300 54.3
ECA234G3266 Erigeron canadensis HOM05D005433 ORTHO05D006675 5.8e-65 251.9 267 58.8
Thecc.07G099400 Theobroma cacao HOM05D005433 ORTHO05D006675 5.8e-65 251.9 277 57.0
Haze_09383 Corylus avellana HOM05D005433 ORTHO05D006675 9.9e-65 251.1 248 57.7
Cpa.g.sc80.11 Carica papaya HOM05D005433 ORTHO05D006675 1.3e-64 250.8 289 53.6
PSO541G1927 Papaver somniferum HOM05D005433 ORTHO05D006675 1.3e-64 250.8 290 53.4
FAN16G0161 Fragaria x ananassa HOM05D005433 ORTHO05D006675 1.7e-64 250.4 294 56.1
Sabra11G0091300 Salix brachista HOM05D005433 ORTHO05D006675 3.8e-64 249.2 280 56.1
Manes.03G104600 Manihot esculenta HOM05D005433 ORTHO05D006675 4.9e-64 248.8 251 59.8
HanXRQChr10g0302491 Helianthus annuus HOM05D005433 ORTHO05D006675 8.4e-64 248.1 178 77.5
EL10Ac4g08262 Beta vulgaris HOM05D005433 ORTHO05D006675 1.4e-63 247.3 286 56.3
MSTRG.15245 Avicennia marina HOM05D005433 ORTHO05D006675 3.2e-63 246.1 261 58.2
FAN11G1719 Fragaria x ananassa HOM05D005433 ORTHO05D006675 5.4e-63 245.4 293 54.6
Potri.011G097800 Populus trichocarpa HOM05D005433 ORTHO05D006675 5.4e-63 245.4 237 60.8
FAN25G0011 Fragaria x ananassa HOM05D005433 ORTHO05D006675 7.1e-63 245.0 294 55.8
vmacro09517 Vaccinium macrocarpon HOM05D005433 ORTHO05D006675 7.1e-63 245.0 327 49.5
CANSAT35G1219 Cannabis sativa HOM05D005433 ORTHO05D006675 9.3e-63 244.6 294 53.4
DCAR_019573 Daucus carota HOM05D005433 ORTHO05D006675 1.6e-62 243.8 214 64.5
Migut.M00771 Erythranthe guttata HOM05D005433 ORTHO05D006675 1.6e-62 243.8 262 56.5
Duzib213G0446 Durio zibethinus HOM05D005433 ORTHO05D006675 2.1e-62 243.4 278 55.0
FvH4_3g19170 Fragaria vesca HOM05D005433 ORTHO05D006675 2.1e-62 243.4 294 56.1
Gohir.D01G046900 Gossypium hirsutum HOM05D005433 ORTHO05D006675 2.1e-62 243.4 257 58.8
Gorai.002G066400 Gossypium raimondii HOM05D005433 ORTHO05D006675 2.1e-62 243.4 257 58.8
Lalb_Chr25g0286191 Lupinus albus HOM05D005433 ORTHO05D006675 2.7e-62 243.0 267 56.6
SGA_v2.0_scaffold73G24224 Striga asiatica HOM05D005433 ORTHO05D006675 2.7e-62 243.0 255 56.9
CsaV3_3G019570 Cucumis sativus L. HOM05D005433 ORTHO05D006675 1.0e-61 241.1 298 52.7
arahy.Tifrunner.gnm1.ann1.H96BGA Arachis hypogaea HOM05D005433 ORTHO05D006675 1.8e-61 240.4 223 60.5
MBI07_g32542_MAGBIO Magnolia biondii HOM05D005433 ORTHO05D006675 1.8e-61 240.4 293 52.6
Gohir.A01G060400 Gossypium hirsutum HOM05D005433 ORTHO05D006675 2.3e-61 240.0 257 58.0
Sc16g0007310 Simmondsia chinensis HOM05D005433 ORTHO05D006675 2.3e-61 240.0 281 54.8
arahy.Tifrunner.gnm1.ann1.7LX6SY Arachis hypogaea HOM05D005433 ORTHO05D006675 1.1e-60 237.7 225 59.6
AUR62036145 Chenopodium quinoa HOM05D005433 ORTHO05D006675 5.6e-60 235.3 267 55.4
THA.LOC104810456 Tarenaya hassleriana HOM05D005433 ORTHO05D006675 7.4e-60 235.0 254 57.5
FAN21G1059 Fragaria x ananassa HOM05D005433 ORTHO05D006675 6.2e-59 231.9 267 56.2
AT3G15110 Arabidopsis thaliana HOM05D005433 ORTHO05D006675 1.4e-58 230.7 257 55.3
Aa31LG8G2320 Aethionema arabicum HOM05D005433 ORTHO05D006675 1.8e-58 230.3 252 57.1
CDE10G1174 Ceratophyllum demersum HOM05D005433 ORTHO05D006675 1.8e-58 230.3 237 57.4
VMungo0331G0725 Vigna mungo HOM05D005433 ORTHO05D006675 2.4e-58 229.9 251 54.6
Dinv14949 Davidia involucrata HOM05D005433 ORTHO05D006675 3.1e-58 229.6 214 64.5
Thhalv10021284m.g Eutrema salsugineum HOM05D005433 ORTHO05D006675 6.9e-58 228.4 217 62.7
BcaB06g29536 Brassica carinata HOM05D005433 ORTHO05D006675 9.0e-58 228.0 245 56.3
C05p52110 Brassica napus HOM05D005433 ORTHO05D006675 9.0e-58 228.0 245 56.3
BolC5t33896H Brassica oleracea HOM05D005433 ORTHO05D006675 9.0e-58 228.0 245 56.3
BraA05t22254Z Brassica rapa HOM05D005433 ORTHO05D006675 2.0e-57 226.9 251 55.8
A05p34330 Brassica napus HOM05D005433 ORTHO05D006675 3.4e-57 226.1 245 56.3
AL3G27460 Arabidopsis lyrata HOM05D005433 ORTHO05D006675 1.7e-56 223.8 249 54.6
Carub.0003s1475 Capsella rubella HOM05D005433 ORTHO05D006675 4.9e-56 222.2 217 60.4
Sp3g13310 Schrenkiella parvula HOM05D005433 ORTHO05D006675 3.2e-55 219.5 254 53.5
Glyma.12G227200 Glycine max HOM05D005433 ORTHO05D006675 4.2e-55 219.2 252 56.7
Phvul.010G112200 Phaseolus vulgaris HOM05D005433 ORTHO05D006675 4.2e-55 219.2 278 50.4
Os02g0307800 Oryza sativa ssp. japonica HOM05D005433 ORTHO05D006675 7.1e-55 218.4 223 59.2
unitig_85.g27411 Utricularia gibba HOM05D005433 ORTHO05D006675 1.6e-54 217.2 251 52.2
unitig_86.g29837 Utricularia gibba HOM05D005433 ORTHO05D006675 1.6e-54 217.2 251 52.2
Lj3g0015051 Lotus japonicus HOM05D005433 ORTHO05D006675 2.1e-54 216.9 266 52.6
ATR0602G229 Amborella trichopoda HOM05D005433 ORTHO05D006675 3.5e-54 216.1 227 58.6
Atru.chr2.2384 Acer truncatum HOM05D005433 ORTHO05D006675 1.8e-53 213.8 203 62.6
Aqoxy4G00583 Aquilegia oxysepala HOM05D005433 ORTHO05D006675 8.7e-53 211.5 282 52.1
Ca_03534_v3 Cicer arietinum L. HOM05D005433 ORTHO05D006675 1.9e-52 210.3 271 50.9
Ca_30930_v3 Cicer arietinum L. HOM05D005433 ORTHO05D006675 1.9e-52 210.3 271 50.9
MSTRG.12890 Avicennia marina HOM05D005433 ORTHO05D006675 1.3e-51 207.6 275 49.5
Zm00001eb235270 Zea mays HOM05D005433 ORTHO05D006675 6.2e-51 205.3 272 48.9
Gohir.A11G286600 Gossypium hirsutum HOM05D005433 ORTHO05D006675 1.2e-49 201.1 282 50.7
Glyma.06G235100 Glycine max HOM05D005433 ORTHO05D006675 3.4e-49 199.5 171 65.5
TPR.G17538 Trifolium pratense HOM05D005433 ORTHO05D006675 4.5e-49 199.1 270 48.1
Psat5g241440 Pisum sativum HOM05D005433 ORTHO05D006675 1.3e-48 197.6 261 51.7
Prupe.4G173400 Prunus persica HOM05D005433 ORTHO05D006675 2.9e-48 196.4 218 58.7
Gohir.D11G306500 Gossypium hirsutum HOM05D005433 ORTHO05D006675 3.8e-48 196.1 271 50.2
Medtr2g078540 Medicago truncatula HOM05D005433 ORTHO05D006675 1.9e-47 193.7 231 52.4
Gorai.007G325500 Gossypium raimondii HOM05D005433 ORTHO05D006675 3.2e-47 193.0 284 48.6
MD11G1256600 Malus domestica HOM05D005433 ORTHO05D006675 1.3e-45 187.6 206 58.3
Lj8A153T41 Lonicera japonica HOM05D005433 ORTHO05D006675 6.3e-43 178.7 197 58.9
AUR62019491 Chenopodium quinoa HOM05D005433 ORTHO05D006675 5.3e-42 175.6 263 46.0
Lj2g0011732 Lotus japonicus HOM05D005433 ORTHO05D006675 5.3e-42 175.6 255 45.5
Sed0015039 Sechium edule HOM05D005433 ORTHO05D006675 5.3e-42 175.6 154 61.7
Migut.H01964 Erythranthe guttata HOM05D005433 ORTHO05D006675 4.5e-41 172.6 271 45.0
Medtr6g042030 Medicago truncatula HOM05D005433 ORTHO05D006675 1.5e-36 157.5 261 43.3
Psat1g075280 Pisum sativum HOM05D005433 ORTHO05D006675 5.7e-36 155.6 257 42.0
HPP92_027387 Vanilla planifolia HOM05D005433 ORTHO05D006675 1.5e-33 147.5 195 51.3
Mapoly0060s0103 Marchantia polymorpha HOM05D005433 ORTHO05D006675 3.4e-33 146.4 211 46.9
arahy.Tifrunner.gnm1.ann1.8TDA44 Arachis hypogaea HOM05D005433 ORTHO05D006675 4.5e-33 146.0 184 48.4
AagrBONN_evm.TU.Sc2ySwM_368.1222 Anthoceros agrestis HOM05D005433 ORTHO05D006675 7.7e-33 145.2 197 47.2
Pp3c11_19700 Physcomitrium patens HOM05D005433 ORTHO05D006675 3.8e-32 142.9 205 46.8
Lsat_1_v5_gn_7_42380 Lactuca sativa HOM05D005433 ORTHO05D006675 5.0e-32 142.5 154 59.1
arahy.Tifrunner.gnm1.ann1.2X8QJZ Arachis hypogaea HOM05D005433 ORTHO05D006675 1.1e-31 141.4 239 43.1
TPR.G19712 Trifolium pratense HOM05D005433 ORTHO05D006675 4.2e-31 139.4 273 41.4
Thecc.07G099700 Theobroma cacao HOM05D005433 ORTHO05D006675 2.7e-30 136.7 132 59.1
SGA_v2.0_scaffold70G23696 Striga asiatica HOM05D005433 ORTHO05D006675 2.6e-28 130.2 178 49.4
C09p61630 Brassica napus HOM05D005433 ORTHO05D006675 8.2e-27 125.2 157 52.2
BolC9t59001H Brassica oleracea HOM05D005433 ORTHO05D006675 8.2e-27 125.2 157 52.2
SMO143G0248 Selaginella moellendorffii HOM05D009232 ORTHO05D006675 1.1e-26 124.8 166 48.2
Lsat_1_v5_gn_0_4360 Lactuca sativa HOM05D005433 ORTHO05D006675 5.9e-25 119.0 142 53.5
Oeu051093.1 Olea europaea HOM05D005433 ORTHO05D006675 2.2e-24 117.1 148 46.6
Oeu051094.1 Olea europaea HOM05D005433 ORTHO05D006675 5.0e-24 115.9 226 39.8
C02p31450 Brassica napus HOM05D005433 ORTHO05D006675 8.5e-24 115.2 102 62.7
Lalb_Chr03g0030801 Lupinus albus HOM05D005433 ORTHO05D006675 9.4e-23 111.7 140 50.0
CBR_g28819 Chara braunii HOM05D005433 ORTHO05D006675 6.7e-21 105.5 241 38.6
BcaB01g02390 Brassica carinata HOM05D005433 ORTHO05D006675 2.4e-18 97.1 193 41.5
CARHR090080 Cardamine hirsuta HOM05D005433 ORTHO05D006675 5.3e-18 95.9 73 71.2
Oeu055126.1 Olea europaea HOM05D005433 ORTHO05D006675 2.6e-17 93.6 125 50.4
Glyma.13G273100 Glycine max HOM05D005433 ORTHO05D006675 2.9e-16 90.1 150 46.0
EL10Ac5g11588 Beta vulgaris HOM05D005433 ORTHO05D006675 1.6e-14 84.3 72 65.3
Cre03.g167400 Chlamydomonas reinhardtii HOM05D005433 ORTHO05D006675 5.7e-12 75.9 152 36.8
Lsat_1_v5_gn_4_180780 Lactuca sativa HOM05D005433 ORTHO05D006675 7.5e-12 75.5 60 66.7
MCO01G315 Micromonas commoda HOM05D005433 ORTHO05D006675 9.7e-12 75.1 163 29.4
Lsat_1_v5_gn_5_140640 Lactuca sativa HOM05D005433 ORTHO05D006675 2.0e-09 67.4 46 67.4
PRCOL_00001575 Prasinoderma coloniale HOM05D005433 ORTHO05D006675 1.7e-08 64.3 202 30.7
TAR629G0034 Trochodendron aralioides HOM05D005433 ORTHO05D006675 2.5e-07 60.5 78 50.0
Actinidia09909 Actinidia chinensis HOM05D005433 ORTHO05D006675 4.2e-07 59.7 44 68.2
EL10Ac1g01129 Beta vulgaris HOM05D005433 ORTHO05D006675 3.6e-06 56.6 34 82.4


User provided reference genes

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