Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc10g007010.1 Solanum lycopersicum HOM05D005352 ORTHO05D006371 2.6e-39 164.9 80 100.0
Sopen10g002920 Solanum pennellii HOM05D005352 ORTHO05D006371 2.6e-39 164.9 80 100.0
PGSC0003DMG400025038 Solanum tuberosum HOM05D005352 ORTHO05D006371 7.6e-39 163.3 80 98.8
CAN.G199.4 Capsicum annuum HOM05D005352 ORTHO05D006371 3.5e-36 154.5 80 93.8
Nitab4.5_0002383g0040 Nicotiana tabacum HOM05D005352 ORTHO05D006371 2.3e-35 151.8 80 90.0
Peaxi162Scf00027g00225 Petunia axillaris HOM05D005352 ORTHO05D006371 1.9e-34 148.7 80 90.0
Nitab4.5_0000207g0090 Nicotiana tabacum HOM05D005352 ORTHO05D006371 1.3e-33 146.0 80 88.8
Peaxi162Scf00069g01430 Petunia axillaris HOM05D005352 ORTHO05D006371 2.4e-32 141.7 77 85.7
Nitab4.5_0001336g0010 Nicotiana tabacum HOM05D005352 ORTHO05D006371 3.1e-32 141.4 81 86.4
Sopen07g031350 Solanum pennellii HOM05D005352 ORTHO05D006371 2.2e-30 135.2 79 84.8
Solyc07g063160.2 Solanum lycopersicum HOM05D005352 ORTHO05D006371 1.2e-28 129.4 79 81.0
PGSC0003DMG400012418 Solanum tuberosum HOM05D005352 ORTHO05D006371 1.6e-28 129.0 79 81.0
Nitab4.5_0001796g0040 Nicotiana tabacum HOM05D005352 ORTHO05D006371 4.6e-28 127.5 69 89.9
Actinidia35250 Actinidia chinensis HOM05D005352 ORTHO05D006371 2.3e-27 125.2 81 74.1
Rhsim06G0198800 Rhododendron simsii HOM05D005352 ORTHO05D006371 8.8e-27 123.2 80 72.5
Thecc.07G089400 Theobroma cacao HOM05D005352 ORTHO05D006371 2.5e-26 121.7 80 73.8
CSS0040687 Camellia sinensis var. sinensis HOM05D005352 ORTHO05D006371 4.3e-26 120.9 81 72.8
ClCG10G006950 Citrullus lanatus HOM05D005352 ORTHO05D006371 4.3e-26 120.9 82 72.0
Manes.15G086800 Manihot esculenta HOM05D005352 ORTHO05D006371 5.7e-26 120.6 81 71.6
Cc05_g12050 Coffea canephora HOM05D005352 ORTHO05D006371 9.7e-26 119.8 80 70.0
MELO3C016512.2 Cucumis melo HOM05D005352 ORTHO05D006371 9.7e-26 119.8 81 71.6
CsaV3_3G006320 Cucumis sativus L. HOM05D005352 ORTHO05D006371 9.7e-26 119.8 81 71.6
Eucgr.F03316 Eucalyptus grandis HOM05D005352 ORTHO05D006371 3.7e-25 117.9 81 70.4
Manes.03G110400 Manihot esculenta HOM05D005352 ORTHO05D006371 3.7e-25 117.9 81 70.4
QL08p021806 Quercus lobata HOM05D005352 ORTHO05D006371 3.7e-25 117.9 79 69.6
Gohir.D11G297800 Gossypium hirsutum HOM05D005352 ORTHO05D006371 1.8e-24 115.5 81 72.8
Gorai.007G322700 Gossypium raimondii HOM05D005352 ORTHO05D006371 1.8e-24 115.5 81 72.8
RcHm_v2.0_Chr5g0033731 Rosa chinensis HOM05D005352 ORTHO05D006371 1.8e-24 115.5 81 69.1
MD03G1227400 Malus domestica HOM05D005352 ORTHO05D006371 2.4e-24 115.2 81 69.1
MD03G1227600 Malus domestica HOM05D005352 ORTHO05D006371 2.4e-24 115.2 81 69.1
Ciclev10010072m.g Citrus clementina HOM05D005352 ORTHO05D006371 4.1e-24 114.4 81 67.9
SGA_v2.0_scaffold34G13815 Striga asiatica HOM05D005352 ORTHO05D006371 4.1e-24 114.4 82 70.7
Lsat_1_v5_gn_6_15501 Lactuca sativa HOM05D005352 ORTHO05D006371 5.3e-24 114.0 77 68.8
Duzib268G0922 Durio zibethinus HOM05D005352 ORTHO05D006371 6.9e-24 113.6 81 70.4
FvH4_3g19981 Fragaria vesca HOM05D005352 ORTHO05D006371 6.9e-24 113.6 81 66.7
Prupe.4G181400 Prunus persica HOM05D005352 ORTHO05D006371 9.1e-24 113.2 82 65.9
GSVIVG01014339001 Vitis vinifera HOM05D005352 ORTHO05D006371 9.1e-24 113.2 80 67.5
Hma1.2p1_0885F.1_g232590 Hydrangea macrophylla HOM05D005352 ORTHO05D006371 1.2e-23 112.8 81 67.9
CAN.G162.62 Capsicum annuum HOM05D005352 ORTHO05D006371 1.5e-23 112.5 98 62.2
FAN25G2626 Fragaria x ananassa HOM05D005352 ORTHO05D006371 1.5e-23 112.5 81 66.7
Rhsim01G0293100 Rhododendron simsii HOM05D005352 ORTHO05D006371 1.5e-23 112.5 81 69.1
Cfa020587 Carpinus fangiana HOM05D005352 ORTHO05D006371 2.0e-23 112.1 80 66.2
FAN11G1098 Fragaria x ananassa HOM05D005352 ORTHO05D006371 2.0e-23 112.1 81 65.4
HanXRQChr12g0364261 Helianthus annuus HOM05D005352 ORTHO05D006371 2.0e-23 112.1 80 68.8
Haze_09426 Corylus avellana HOM05D002732 ORTHO05D002955 2.6e-23 111.7 79 64.6
Hma1.2p1_0898F.1_g234370 Hydrangea macrophylla HOM05D005352 ORTHO05D006371 3.4e-23 111.3 81 71.6
Lsat_1_v5_gn_9_96160 Lactuca sativa HOM05D005352 ORTHO05D006371 3.4e-23 111.3 80 66.2
MD11G1246900 Malus domestica HOM05D005352 ORTHO05D006371 5.9e-23 110.5 81 67.9
Cpa.g.sc80.62 Carica papaya HOM05D005352 ORTHO05D006371 7.7e-23 110.2 81 65.4
Dinv04306 Davidia involucrata HOM05D005352 ORTHO05D006371 7.7e-23 110.2 81 67.9
Gohir.A11G284900 Gossypium hirsutum HOM05D005352 ORTHO05D006371 7.7e-23 110.2 81 70.4
Migut.M00807 Erythranthe guttata HOM05D005352 ORTHO05D006371 1.0e-22 109.8 77 67.5
HanXRQChr13g0406971 Helianthus annuus HOM05D005352 ORTHO05D006371 1.0e-22 109.8 80 66.2
Potri.001G400000 Populus trichocarpa HOM05D005352 ORTHO05D006371 1.0e-22 109.8 80 66.2
PGR031G2765 Punica granatum HOM05D005352 ORTHO05D006371 1.0e-22 109.8 83 63.9
DCAR_013105 Daucus carota HOM05D005352 ORTHO05D006371 1.3e-22 109.4 81 65.4
FAN16G1707 Fragaria x ananassa HOM05D005352 ORTHO05D006371 1.3e-22 109.4 81 65.4
Gohir.A04G030400 Gossypium hirsutum HOM05D005352 ORTHO05D006371 2.2e-22 108.6 81 69.1
TAR629G2863 Trochodendron aralioides HOM05D000001 ORTHO05D000424 2.2e-22 108.6 79 68.4
Gorai.009G388100 Gossypium raimondii HOM05D005352 ORTHO05D006371 5.0e-22 107.5 81 67.9
TAR629G0728 Trochodendron aralioides HOM05D005352 ORTHO05D006371 6.5e-22 107.1 79 65.8
unitig_26.g9534 Utricularia gibba HOM05D005352 ORTHO05D006371 6.5e-22 107.1 74 67.6
Sabra16G0262400 Salix brachista HOM05D005352 ORTHO05D006371 8.5e-22 106.7 80 62.5
Lj3g0008482 Lotus japonicus HOM05D005352 ORTHO05D006371 1.1e-21 106.3 81 61.7
Potri.011G119000 Populus trichocarpa HOM05D005352 ORTHO05D006371 1.1e-21 106.3 80 61.2
Sed0025683 Sechium edule HOM05D005352 ORTHO05D006371 1.1e-21 106.3 81 67.9
Dinv20171 Davidia involucrata HOM05D005352 ORTHO05D006371 1.4e-21 105.9 80 65.0
Gohir.D05G355700 Gossypium hirsutum HOM05D005352 ORTHO05D006371 1.4e-21 105.9 80 66.2
TWI39G1034 Tripterygium wilfordii HOM05D005352 ORTHO05D006371 1.4e-21 105.9 81 66.7
Glyma.12G154400 Glycine max HOM05D005352 ORTHO05D006371 3.2e-21 104.8 81 63.0
Sabra11G0103700 Salix brachista HOM05D002732 ORTHO05D002955 3.2e-21 104.8 80 62.5
vmacro11864 Vaccinium macrocarpon HOM05D002732 ORTHO05D002955 3.2e-21 104.8 62 79.0
Glyma.06G242800 Glycine max HOM05D005352 ORTHO05D006371 4.2e-21 104.4 81 63.0
arahy.Tifrunner.gnm1.ann1.I7TC1S Arachis hypogaea HOM05D005352 ORTHO05D006371 5.5e-21 104.0 81 59.3
Phvul.004G175600 Phaseolus vulgaris HOM05D005352 ORTHO05D006371 5.5e-21 104.0 81 61.7
vmacro09532 Vaccinium macrocarpon HOM05D005352 ORTHO05D006371 5.5e-21 104.0 81 61.7
DCAR_017140 Daucus carota HOM05D005352 ORTHO05D006371 9.4e-21 103.2 80 62.5
Nn7g36574 Nelumbo nucifera HOM05D005352 ORTHO05D006371 9.4e-21 103.2 73 71.2
BcaB04g20935 Brassica carinata HOM05D002732 ORTHO05D006371 1.2e-20 102.8 80 63.8
Sc03g0009970 Simmondsia chinensis HOM05D005352 ORTHO05D006371 1.6e-20 102.4 80 65.0
COL.COLO4_27168 Corchorus olitorius HOM05D005352 ORTHO05D006371 2.1e-20 102.1 51 90.2
arahy.Tifrunner.gnm1.ann1.UV8WYD Arachis hypogaea HOM05D005352 ORTHO05D006371 3.6e-20 101.3 78 57.7
Lj5g0028047 Lotus japonicus HOM05D005352 ORTHO05D006371 3.6e-20 101.3 81 64.2
Os02g0794600 Oryza sativa ssp. japonica HOM05D005352 ORTHO05D006371 3.6e-20 101.3 57 78.9
AL3G27810 Arabidopsis lyrata HOM05D005352 ORTHO05D006371 4.7e-20 100.9 62 72.6
CiPaw.11G169400 Carya illinoinensis HOM05D005352 ORTHO05D006371 4.7e-20 100.9 80 61.2
Lalb_Chr25g0286381 Lupinus albus HOM05D005352 ORTHO05D006371 4.7e-20 100.9 81 63.0
Ah.04g164870 Amaranthus hybridus HOM05D005352 ORTHO05D006371 6.1e-20 100.5 50 88.0
Ah.06g184190 Amaranthus hybridus HOM05D005352 ORTHO05D006371 6.1e-20 100.5 57 78.9
BolC1t04875H Brassica oleracea HOM05D002732 ORTHO05D002955 6.1e-20 100.5 60 78.3
Lalb_Chr01g0006571 Lupinus albus HOM05D005352 ORTHO05D006371 6.1e-20 100.5 81 60.5
Oeu011684.1 Olea europaea HOM05D005352 ORTHO05D006371 6.1e-20 100.5 50 86.0
AT3G15352 Arabidopsis thaliana HOM05D005352 ORTHO05D006371 7.9e-20 100.1 62 72.6
CARHR090370 Cardamine hirsuta HOM05D005352 ORTHO05D006371 7.9e-20 100.1 60 73.3
Ca_24271_v3 Cicer arietinum L. HOM05D005352 ORTHO05D006371 7.9e-20 100.1 81 59.3
Dinv03511 Davidia involucrata HOM05D005352 ORTHO05D006371 7.9e-20 100.1 71 69.0
ECA240G0949 Erigeron canadensis HOM05D005352 ORTHO05D006371 7.9e-20 100.1 81 65.4
Carub.0001s4218 Capsella rubella HOM05D005352 ORTHO05D006371 1.0e-19 99.8 67 71.6
CiPaw.12G118100 Carya illinoinensis HOM05D005352 ORTHO05D006371 1.0e-19 99.8 69 66.7
MBI06_g21936_MAGBIO Magnolia biondii HOM05D005352 ORTHO05D006371 1.0e-19 99.8 80 61.2
FAN21G3346 Fragaria x ananassa HOM05D000257 ORTHO05D009129 1.8e-19 99.0 62 69.4
Os09g0420700 Oryza sativa ssp. japonica HOM05D005352 ORTHO05D006371 1.8e-19 99.0 59 74.6
PSO384G2174 Papaver somniferum HOM05D005352 ORTHO05D006371 1.8e-19 99.0 70 71.4
A01p38690 Brassica napus HOM05D005352 ORTHO05D006371 2.3e-19 98.6 60 76.7
THA.LOC104810475 Tarenaya hassleriana HOM05D005352 ORTHO05D006371 2.3e-19 98.6 50 86.0
THA.LOC104818076 Tarenaya hassleriana HOM05D005352 ORTHO05D006371 2.3e-19 98.6 50 86.0
AL1G61380 Arabidopsis lyrata HOM05D005352 ORTHO05D006371 3.0e-19 98.2 67 70.1
BcaC08g43490 Brassica carinata HOM05D002732 ORTHO05D002955 3.0e-19 98.2 80 63.8
C06p08730 Brassica napus HOM05D005352 ORTHO05D006371 3.0e-19 98.2 80 63.8
BolC6t35949H Brassica oleracea HOM05D005352 ORTHO05D006371 3.0e-19 98.2 80 63.8
Migut.H01937 Erythranthe guttata HOM05D005352 ORTHO05D006371 3.0e-19 98.2 65 73.8
Thhalv10021884m.g Eutrema salsugineum HOM05D005352 ORTHO05D006371 5.1e-19 97.4 50 84.0
BcaC09g48499 Brassica carinata HOM05D005352 ORTHO05D006371 6.7e-19 97.1 60 75.0
C01p49110 Brassica napus HOM05D002732 ORTHO05D002955 6.7e-19 97.1 60 75.0
AUR62019420 Chenopodium quinoa HOM05D005352 ORTHO05D006371 6.7e-19 97.1 80 61.2
AT1G53030 Arabidopsis thaliana HOM05D005352 ORTHO05D006371 8.8e-19 96.7 67 70.1
CSS0006050 Camellia sinensis var. sinensis HOM05D005352 ORTHO05D006371 8.8e-19 96.7 73 63.0
CSS0042186 Camellia sinensis var. sinensis HOM05D005352 ORTHO05D006371 8.8e-19 96.7 73 63.0
AUR62034294 Chenopodium quinoa HOM05D002732 ORTHO05D002955 8.8e-19 96.7 80 61.2
HPP92_010342 Vanilla planifolia HOM05D005352 ORTHO05D006371 8.8e-19 96.7 47 89.4
CARHR043250 Cardamine hirsuta HOM05D005352 ORTHO05D006371 1.1e-18 96.3 67 70.1
Nn2g14920 Nelumbo nucifera HOM05D005352 ORTHO05D006371 1.1e-18 96.3 81 64.2
A06p01290 Brassica napus HOM05D005352 ORTHO05D006371 1.5e-18 95.9 80 60.0
BraA06t23355Z Brassica rapa HOM05D005352 ORTHO05D006371 1.5e-18 95.9 80 60.0
Carub.0003s1504 Capsella rubella HOM05D005352 ORTHO05D006371 1.5e-18 95.9 58 77.6
Sp3g13580 Schrenkiella parvula HOM05D005352 ORTHO05D006371 1.5e-18 95.9 66 68.2
Aa31LG10G2070 Aethionema arabicum HOM05D005352 ORTHO05D006371 2.0e-18 95.5 67 68.7
Thhalv10011917m.g Eutrema salsugineum HOM05D005352 ORTHO05D006371 2.0e-18 95.5 60 73.3
EL10Ac4g08174 Beta vulgaris HOM05D005352 ORTHO05D006371 7.4e-18 93.6 47 83.0
Aa31LG8G2560 Aethionema arabicum HOM05D004832 ORTHO05D005821 9.7e-18 93.2 50 82.0
Ca_01841_v3 Cicer arietinum L. HOM05D005352 ORTHO05D006371 9.7e-18 93.2 58 75.9
Pp3c15_5560 Physcomitrium patens HOM05D005352 ORTHO05D006371 1.3e-17 92.8 71 60.6
MBI03_g28426_MAGBIO Magnolia biondii HOM05D005352 ORTHO05D006371 1.7e-17 92.4 51 82.4
Medtr0271s0050 Medicago truncatula HOM05D005352 ORTHO05D006371 1.7e-17 92.4 57 73.7
Medtr0648s0010 Medicago truncatula HOM05D005352 ORTHO05D006371 1.7e-17 92.4 57 73.7
TPR.G39025 Trifolium pratense HOM05D005352 ORTHO05D006371 2.2e-17 92.0 58 74.1
arahy.Tifrunner.gnm1.ann1.BBI5VM Arachis hypogaea HOM05D005352 ORTHO05D006371 6.3e-17 90.5 47 78.7
Medtr1g092430 Medicago truncatula HOM05D005352 ORTHO05D006371 6.3e-17 90.5 55 74.5
arahy.Tifrunner.gnm1.ann1.XK3P9A Arachis hypogaea HOM05D005352 ORTHO05D006371 1.1e-16 89.7 70 60.0
Mapoly0075s0017 Marchantia polymorpha HOM05D005352 ORTHO05D006371 1.1e-16 89.7 50 76.0
AagrBONN_evm.TU.Sc2ySwM_228.196 Anthoceros agrestis HOM05D005352 ORTHO05D006371 1.8e-16 89.0 47 76.6
Aqoxy7G00104 Aquilegia oxysepala HOM05D005352 ORTHO05D006371 2.4e-16 88.6 43 88.4
SEGI_39587 Sequoiadendron giganteum HOM05D005352 ORTHO05D006371 3.1e-16 88.2 82 54.9
ATR0568G005 Amborella trichopoda HOM05D005352 ORTHO05D006371 5.3e-16 87.4 81 53.1
Psat5g244480 Pisum sativum HOM05D005352 ORTHO05D006371 5.3e-16 87.4 57 68.4
Psat5g287360 Pisum sativum HOM05D005352 ORTHO05D006371 5.3e-16 87.4 57 68.4
ATR0736G058 Amborella trichopoda HOM05D005352 ORTHO05D006371 5.9e-15 84.0 43 79.1
Zm00001eb312990 Zea mays HOM05D005352 ORTHO05D006371 1.0e-14 83.2 72 61.1
CBR_g8998 Chara braunii HOM05D004567 ORTHO05D005726 1.1e-13 79.7 43 76.7
SMO358G0354 Selaginella moellendorffii HOM05D005352 ORTHO05D006371 1.1e-13 79.7 42 76.2
Cre05.g232850 Chlamydomonas reinhardtii HOM05D005352 ORTHO05D006371 8.0e-12 73.6 53 67.9
MCO06G059 Micromonas commoda HOM05D005352 ORTHO05D006371 4.0e-11 71.2 57 61.4
BcaB07g33364 Brassica carinata HOM05D005352 ORTHO05D006371 1.4e-08 62.8 61 50.8
CDE08G1336 Ceratophyllum demersum HOM05D005352 ORTHO05D006371 2.2e-06 55.5 34 76.5


User provided reference genes

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