Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen10g002270 Solanum pennellii HOM05D005684 ORTHO05D007427 4.0e-142 508.1 252 100.0
Solyc10g006320.3 Solanum lycopersicum HOM05D005684 ORTHO05D007427 3.4e-141 505.0 252 99.2
PGSC0003DMG400014423 Solanum tuberosum HOM05D005684 ORTHO05D007427 4.4e-141 504.6 252 99.2
Nitab4.5_0005048g0050 Nicotiana tabacum HOM05D005684 ORTHO05D007427 6.4e-140 500.7 252 98.0
Peaxi162Scf00387g00210 Petunia axillaris HOM05D005684 ORTHO05D007427 2.0e-138 495.7 252 96.4
Dinv22273 Davidia involucrata HOM05D005684 ORTHO05D007427 8.9e-134 480.3 252 91.7
Actinidia35335 Actinidia chinensis HOM05D005684 ORTHO05D007427 1.7e-132 476.1 252 90.5
Cc05_g13580 Coffea canephora HOM05D005684 ORTHO05D007427 2.9e-132 475.3 250 91.2
MSTRG.12968 Avicennia marina HOM05D005684 ORTHO05D007427 1.4e-131 473.0 252 89.7
Actinidia10725 Actinidia chinensis HOM05D005684 ORTHO05D007427 3.2e-131 471.9 252 90.1
Lj1A870G92 Lonicera japonica HOM05D005684 ORTHO05D007427 4.1e-131 471.5 252 89.7
Migut.H01837 Erythranthe guttata HOM05D005684 ORTHO05D007427 1.2e-130 469.9 252 89.3
CAN.G1781.5 Capsicum annuum HOM05D005684 ORTHO05D007427 1.6e-130 469.5 236 97.5
Lsat_1_v5_gn_7_109480 Lactuca sativa HOM05D005684 ORTHO05D007427 2.7e-130 468.8 252 88.9
ECA236G3763 Erigeron canadensis HOM05D005684 ORTHO05D007427 4.6e-130 468.0 252 88.9
HanXRQChr11g0336331 Helianthus annuus HOM05D005684 ORTHO05D007427 3.9e-129 464.9 252 88.5
Manes.03G124800 Manihot esculenta HOM05D005684 ORTHO05D007427 7.3e-128 460.7 249 88.8
Potri.001G424600 Populus trichocarpa HOM05D005684 ORTHO05D007427 2.1e-127 459.1 249 88.4
Sc16g0006290 Simmondsia chinensis HOM05D005684 ORTHO05D007427 4.7e-127 458.0 251 87.6
Lj6g0016495 Lotus japonicus HOM05D005684 ORTHO05D007427 1.1e-126 456.8 250 87.2
Manes.15G073300 Manihot esculenta HOM05D005684 ORTHO05D007427 1.1e-126 456.8 249 87.6
THA.LOC104817661 Tarenaya hassleriana HOM05D005684 ORTHO05D007427 2.3e-126 455.7 250 89.2
arahy.Tifrunner.gnm1.ann1.A1QMDX Arachis hypogaea HOM05D005684 ORTHO05D007427 6.8e-126 454.1 250 86.8
arahy.Tifrunner.gnm1.ann1.G9AZJ3 Arachis hypogaea HOM05D005684 ORTHO05D007427 6.8e-126 454.1 250 86.8
FvH4_3g22390 Fragaria vesca HOM05D005684 ORTHO05D007427 6.8e-126 454.1 250 86.0
Nitab4.5_0001393g0150 Nicotiana tabacum HOM05D005684 ORTHO05D007427 6.8e-126 454.1 252 90.1
Ciclev10009283m.g Citrus clementina HOM05D005684 ORTHO05D007427 2.0e-125 452.6 250 86.4
Thhalv10014489m.g Eutrema salsugineum HOM05D005684 ORTHO05D007427 2.0e-125 452.6 250 88.4
FAN21G0196 Fragaria x ananassa HOM05D005684 ORTHO05D007427 2.0e-125 452.6 250 85.6
TPR.G16583 Trifolium pratense HOM05D005684 ORTHO05D007427 2.6e-125 452.2 252 86.1
TWI38G0783 Tripterygium wilfordii HOM05D005684 ORTHO05D007427 2.6e-125 452.2 244 88.5
vmacro09729 Vaccinium macrocarpon HOM05D005684 ORTHO05D007427 2.6e-125 452.2 272 81.6
Cpa.g.sc97.28 Carica papaya HOM05D005684 ORTHO05D007427 3.4e-125 451.8 250 86.8
RcHm_v2.0_Chr5g0039061 Rosa chinensis HOM05D005684 ORTHO05D007427 3.4e-125 451.8 250 85.6
CANSAT21G0158 Cannabis sativa HOM05D005684 ORTHO05D007427 9.9e-125 450.3 249 85.1
ATR0749G094 Amborella trichopoda HOM05D005684 ORTHO05D007427 1.3e-124 449.9 251 86.1
Aa31LG3G10790 Aethionema arabicum HOM05D005684 ORTHO05D007427 2.2e-124 449.1 255 86.7
Glyma.08G314600 Glycine max HOM05D005684 ORTHO05D007427 2.2e-124 449.1 250 85.6
Medtr3g051210 Medicago truncatula HOM05D005684 ORTHO05D007427 2.2e-124 449.1 252 85.3
VMungo0540G0423 Vigna mungo HOM05D005684 ORTHO05D007427 2.2e-124 449.1 250 86.4
MD03G1205400 Malus domestica HOM05D005684 ORTHO05D007427 2.9e-124 448.7 250 84.8
Carub.0007s1380 Capsella rubella HOM05D005684 ORTHO05D007427 4.9e-124 448.0 249 87.1
Ca_14720_v3 Cicer arietinum L. HOM05D005684 ORTHO05D007427 4.9e-124 448.0 252 85.3
Eucgr.F03458 Eucalyptus grandis HOM05D005684 ORTHO05D007427 4.9e-124 448.0 250 85.6
GSVIVG01037615001 Vitis vinifera HOM05D005684 ORTHO05D007427 4.9e-124 448.0 251 86.9
TAR383G0098 Trochodendron aralioides HOM05D005684 ORTHO05D007427 6.4e-124 447.6 252 86.1
FAN11G1729 Fragaria x ananassa HOM05D005684 ORTHO05D007427 1.1e-123 446.8 258 83.3
CiPaw.12G128600 Carya illinoinensis HOM05D005684 ORTHO05D007427 1.9e-123 446.0 244 86.5
ClCG10G005500 Citrullus lanatus HOM05D005684 ORTHO05D007427 2.4e-123 445.7 244 86.5
Phvul.006G040700 Phaseolus vulgaris HOM05D005684 ORTHO05D007427 2.4e-123 445.7 250 86.4
Gohir.A01G078600 Gossypium hirsutum HOM05D005684 ORTHO05D007427 4.1e-123 444.9 249 86.7
CsaV3_3G005220 Cucumis sativus L. HOM05D005684 ORTHO05D007427 7.1e-123 444.1 249 84.7
SGA_v2.0_scaffold9G05066 Striga asiatica HOM05D005684 ORTHO05D007427 7.1e-123 444.1 270 82.2
Aqoxy7G03212 Aquilegia oxysepala HOM05D005684 ORTHO05D007427 9.2e-123 443.7 251 85.7
Gohir.D01G065700 Gossypium hirsutum HOM05D005684 ORTHO05D007427 9.2e-123 443.7 249 86.3
Gorai.002G087600 Gossypium raimondii HOM05D005684 ORTHO05D007427 9.2e-123 443.7 249 86.3
Lalb_Chr06g0171921 Lupinus albus HOM05D005684 ORTHO05D007427 9.2e-123 443.7 250 85.2
PGR031G1629 Punica granatum HOM05D005684 ORTHO05D007427 9.2e-123 443.7 249 85.1
Glyma.18G099600 Glycine max HOM05D005684 ORTHO05D007427 1.6e-122 443.0 250 84.8
AL7G25790 Arabidopsis lyrata HOM05D005684 ORTHO05D007427 2.1e-122 442.6 250 85.6
AT4G27040 Arabidopsis thaliana HOM05D005684 ORTHO05D007427 2.1e-122 442.6 250 85.6
QL09p032912 Quercus lobata HOM05D005684 ORTHO05D007427 2.1e-122 442.6 244 87.7
Sp7g25020 Schrenkiella parvula HOM05D005684 ORTHO05D007427 2.1e-122 442.6 250 86.0
Thhalv10026070m.g Eutrema salsugineum HOM05D005684 ORTHO05D007427 2.7e-122 442.2 250 86.0
Sed0015085 Sechium edule HOM05D005684 ORTHO05D007427 4.6e-122 441.4 249 83.9
BcaC06g32714 Brassica carinata HOM05D005684 ORTHO05D007427 6.0e-122 441.0 250 85.6
BolC7t46008H Brassica oleracea HOM05D005684 ORTHO05D007427 6.0e-122 441.0 250 85.6
PSO170G3986 Papaver somniferum HOM05D005684 ORTHO05D007427 6.0e-122 441.0 244 87.3
CARHR234690 Cardamine hirsuta HOM05D005684 ORTHO05D007427 7.8e-122 440.7 250 85.6
MD11G1221300 Malus domestica HOM05D005684 ORTHO05D007427 7.8e-122 440.7 249 83.9
A03p57030 Brassica napus HOM05D005684 ORTHO05D007427 1.0e-121 440.3 250 85.6
C07p55040 Brassica napus HOM05D005684 ORTHO05D007427 1.0e-121 440.3 250 85.6
QL08p011467 Quercus lobata HOM05D005684 ORTHO05D007427 1.3e-121 439.9 244 87.3
BraA03t14772Z Brassica rapa HOM05D005684 ORTHO05D007427 1.7e-121 439.5 250 85.2
A01p18200 Brassica napus HOM05D005684 ORTHO05D007427 3.9e-121 438.3 250 85.2
BraA01t01775Z Brassica rapa HOM05D005684 ORTHO05D007427 3.9e-121 438.3 250 85.2
QL08p011589 Quercus lobata HOM05D005684 ORTHO05D007427 3.9e-121 438.3 244 86.9
Medtr7g033650 Medicago truncatula HOM05D005684 ORTHO05D007427 6.6e-121 437.6 252 83.7
PSO017G1132 Papaver somniferum HOM05D005684 ORTHO05D007427 1.1e-120 436.8 244 86.5
Duzib170G0103 Durio zibethinus HOM05D005684 ORTHO05D007427 1.5e-120 436.4 249 85.1
Nn8g40268 Nelumbo nucifera HOM05D005684 ORTHO05D007427 1.9e-120 436.0 251 82.1
MBI15_g26086_MAGBIO Magnolia biondii HOM05D005684 ORTHO05D007427 7.3e-120 434.1 248 83.9
RhsimUnG0251500 Rhododendron simsii HOM05D001404 ORTHO05D002309 9.5e-120 433.7 233 89.7
BcaC09g50622 Brassica carinata HOM05D005684 ORTHO05D007427 1.6e-119 433.0 250 84.4
COL.COLO4_09643 Corchorus olitorius HOM05D005684 ORTHO05D007427 2.8e-119 432.2 250 84.8
Sabra16G0288400 Salix brachista HOM05D005684 ORTHO05D007427 8.1e-119 430.6 296 74.3
Aa31LG5G10350 Aethionema arabicum HOM05D005684 ORTHO05D007427 3.1e-118 428.7 297 73.4
Oeu062595.4 Olea europaea HOM05D005684 ORTHO05D007427 4.0e-118 428.3 363 63.6
SEGI_16862 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 3.8e-116 421.8 252 79.4
Cfa020373 Carpinus fangiana HOM05D005684 ORTHO05D007427 4.9e-116 421.4 234 85.0
Os09g0529700 Oryza sativa ssp. japonica HOM05D005684 ORTHO05D007427 1.0e-113 413.7 249 80.3
Haze_09656 Corylus avellana HOM05D005684 ORTHO05D007427 3.0e-113 412.1 250 80.4
Hma1.2p1_0673F.1_g201210 Hydrangea macrophylla HOM05D005684 ORTHO05D007427 8.7e-113 410.6 257 80.2
Os11g0670700 Oryza sativa ssp. japonica HOM05D005684 ORTHO05D007427 3.3e-112 408.7 249 79.5
SMO232G0102 Selaginella moellendorffii HOM05D005684 ORTHO05D007427 6.9e-110 401.0 246 76.0
BolC1t02253H Brassica oleracea HOM05D005684 ORTHO05D007427 1.7e-105 386.3 222 83.3
Mapoly0007s0150 Marchantia polymorpha HOM05D005684 ORTHO05D007427 5.6e-104 381.3 242 73.6
CDE08G1370 Ceratophyllum demersum HOM05D005684 ORTHO05D007427 4.8e-103 378.3 248 73.4
Pp3c10_13560 Physcomitrium patens HOM05D005684 ORTHO05D007427 3.4e-101 372.1 239 75.3
HPP92_001822 Vanilla planifolia HOM05D005684 ORTHO05D007427 2.9e-100 369.0 213 83.1
Prupe.4G210400 Prunus persica HOM05D005684 ORTHO05D007427 1.2e-98 363.6 250 71.6
AUR62020473 Chenopodium quinoa HOM05D005684 ORTHO05D007427 2.1e-98 362.8 251 71.3
BolC1t02251H Brassica oleracea HOM05D005684 ORTHO05D007427 6.0e-98 361.3 237 75.9
EL10Ac4g07848 Beta vulgaris HOM05D005684 ORTHO05D007427 4.8e-95 351.7 251 71.3
CBR_g28043 Chara braunii HOM05D005684 ORTHO05D007427 2.2e-92 342.8 246 66.3
SEGI_13452 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 3.9e-89 332.0 206 78.2
FAN16G3416 Fragaria x ananassa HOM05D005684 ORTHO05D007427 6.2e-87 324.7 194 81.4
Zm00001eb103240 Zea mays HOM05D005684 ORTHO05D007427 2.4e-86 322.8 187 84.5
Psat5g180640 Pisum sativum HOM05D005684 ORTHO05D007427 2.6e-85 319.3 183 80.9
AUR62015738 Chenopodium quinoa HOM05D005684 ORTHO05D007427 1.9e-83 313.2 325 53.2
Cre17.g706650 Chlamydomonas reinhardtii HOM05D005684 ORTHO05D007427 5.0e-76 288.5 240 55.8
Ah.06g186400 Amaranthus hybridus HOM05D005684 ORTHO05D007427 5.5e-75 285.0 209 67.9
C01p23200 Brassica napus HOM05D005684 ORTHO05D007427 2.5e-72 276.2 184 73.4
MELO3C032233.2 Cucumis melo HOM05D005684 ORTHO05D007427 7.4e-72 274.6 151 86.8
CAN.G915.10 Capsicum annuum HOM05D005684 ORTHO05D007427 1.8e-70 270.0 198 71.7
MCO16G427 Micromonas commoda HOM05D005684 ORTHO05D007427 1.1e-67 260.8 249 51.8
AagrBONN_evm.TU.Sc2ySwM_228.646 Anthoceros agrestis HOM05D005684 ORTHO05D007427 4.2e-67 258.8 152 81.6
Duzib213G0140 Durio zibethinus HOM05D005684 ORTHO05D007427 4.7e-66 255.4 211 65.9
Thecc.07G042900 Theobroma cacao HOM05D005684 ORTHO05D007427 4.7e-58 228.8 250 53.2
TAR626G1586 Trochodendron aralioides HOM05D005684 ORTHO05D007427 1.4e-54 217.2 130 81.5
GSVIVG01037619001 Vitis vinifera HOM05D005684 ORTHO05D007427 4.7e-50 202.2 120 81.7
TAR626G0395 Trochodendron aralioides HOM05D005684 ORTHO05D007427 1.4e-49 200.7 99 97.0
PRCOL_00005955 Prasinoderma coloniale HOM05D005684 ORTHO05D007427 3.4e-48 196.1 249 46.2
MELO3C031910.2 Cucumis melo HOM05D005684 ORTHO05D007427 3.2e-43 179.5 99 83.8
PGR142G1953 Punica granatum HOM05D005684 ORTHO05D007427 8.0e-42 174.9 99 80.8
Dinv40739 Davidia involucrata HOM05D005684 ORTHO05D007427 2.3e-41 173.3 158 60.8
C01p23160 Brassica napus HOM05D005684 ORTHO05D007427 2.0e-40 170.2 99 79.8
Prupe.5G052500 Prunus persica HOM05D005684 ORTHO05D007427 6.3e-39 165.2 99 78.8
Cfa026637 Carpinus fangiana HOM05D005684 ORTHO05D007427 8.3e-39 164.9 253 34.0
CAN.G1192.5 Capsicum annuum HOM05D005684 ORTHO05D000076 3.8e-36 156.0 98 82.7
HanXRQChr09g0268041 Helianthus annuus HOM05D005684 ORTHO05D007427 3.5e-21 106.3 103 56.3
SEGI_35638 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 3.3e-19 99.8 69 65.2
Actinidia05107 Actinidia chinensis HOM05D006458 ORTHO05D008433 2.2e-15 87.0 137 43.8
AagrBONN_evm.TU.Sc2ySwM_340.2023 Anthoceros agrestis HOM05D005684 ORTHO05D007427 8.3e-15 85.1 55 76.4
Hma1.2p1_0212F.1_g090110 Hydrangea macrophylla HOM05D005684 ORTHO05D048316 1.6e-13 80.9 44 77.3
SEGI_36060 Sequoiadendron giganteum HOM05D005684 ORTHO05D383802 5.1e-12 75.9 56 62.5
GSVIVG01037618001 Vitis vinifera HOM05D005684 ORTHO05D048316 6.8e-09 65.5 30 93.3
Zm00001eb057030 Zea mays HOM05D000424 ORTHO05D000355 1.5e-08 64.3 55 65.5


User provided reference genes

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