Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen10g002100 Solanum pennellii HOM05D007542 ORTHO05D009519 1.7e-79 299.3 151 100.0
Solyc10g006150.3 Solanum lycopersicum HOM05D007542 ORTHO05D009519 2.5e-75 285.4 148 96.6
PGSC0003DMG400014384 Solanum tuberosum HOM05D007542 ORTHO05D009519 1.7e-68 262.7 152 86.8
CAN.G492.20 Capsicum annuum HOM05D007542 ORTHO05D009519 8.7e-52 207.2 140 78.6
Manes.03G133100 Manihot esculenta HOM05D007542 ORTHO05D009519 4.5e-24 115.2 108 57.4
Prupe.4G220300 Prunus persica HOM05D007542 ORTHO05D009519 1.0e-23 114.0 103 59.2
Nitab4.5_0002826g0080 Nicotiana tabacum HOM05D007542 ORTHO05D009519 1.7e-23 113.2 105 61.0
GSVIVG01037700001 Vitis vinifera HOM05D007542 ORTHO05D009519 1.9e-22 109.8 121 53.7
Nitab4.5_0000328g0130 Nicotiana tabacum HOM05D007542 ORTHO05D009519 2.5e-22 109.4 129 48.8
Dinv22244 Davidia involucrata HOM05D007542 ORTHO05D009519 9.4e-22 107.5 103 55.3
Peaxi162Scf00235g00059 Petunia axillaris HOM05D007542 ORTHO05D009519 9.4e-22 107.5 106 55.7
Hma1.2p1_1332F.1_g276050 Hydrangea macrophylla HOM05D007542 ORTHO05D009519 1.6e-21 106.7 103 52.4
TWI38G0725 Tripterygium wilfordii HOM05D007542 ORTHO05D009519 2.7e-21 105.9 120 50.8
MSTRG.6947 Avicennia marina HOM05D007542 ORTHO05D009519 7.9e-21 104.4 112 50.9
TAR643G0006 Trochodendron aralioides HOM05D007542 ORTHO05D009519 7.9e-21 104.4 103 58.3
Gorai.002G092100 Gossypium raimondii HOM05D007542 ORTHO05D009519 1.4e-20 103.6 133 50.4
MD11G1212200 Malus domestica HOM05D007542 ORTHO05D009519 1.8e-20 103.2 104 54.8
Nn1g03444 Nelumbo nucifera HOM05D007542 ORTHO05D009519 1.8e-20 103.2 109 54.1
DCAR_016720 Daucus carota HOM05D007542 ORTHO05D009519 3.9e-20 102.1 111 48.6
Potri.011G087000 Populus trichocarpa HOM05D007542 ORTHO05D009519 3.9e-20 102.1 104 54.8
Cpa.g.sc12.265 Carica papaya HOM05D007542 ORTHO05D009519 6.7e-20 101.3 110 56.4
Duzib170G0581 Durio zibethinus HOM05D007542 ORTHO05D009519 6.7e-20 101.3 130 47.7
Atru.chr2.3499 Acer truncatum HOM05D007542 ORTHO05D009519 8.8e-20 100.9 120 48.3
Ciclev10009585m.g Citrus clementina HOM05D007542 ORTHO05D009519 8.8e-20 100.9 103 52.4
Gohir.D01G069700 Gossypium hirsutum HOM05D007542 ORTHO05D009519 2.0e-19 99.8 133 49.6
Thecc.07G031100 Theobroma cacao HOM05D007542 ORTHO05D009519 2.0e-19 99.8 108 54.6
MD03G1195800 Malus domestica HOM05D007542 ORTHO05D009519 3.3e-19 99.0 103 54.4
CSS0027066 Camellia sinensis var. sinensis HOM05D007542 ORTHO05D009519 7.4e-19 97.8 107 54.2
QL08p006891 Quercus lobata HOM05D007542 ORTHO05D009519 1.3e-18 97.1 110 50.0
FvH4_3g23270 Fragaria vesca HOM05D007542 ORTHO05D009519 1.7e-18 96.7 149 40.3
FAN11G1962 Fragaria x ananassa HOM05D007542 ORTHO05D009519 1.7e-18 96.7 149 40.3
TAR626G0917 Trochodendron aralioides HOM05D007542 ORTHO05D009519 1.7e-18 96.7 97 58.8
RcHm_v2.0_Chr5g0040991 Rosa chinensis HOM05D007542 ORTHO05D009519 2.2e-18 96.3 152 44.7
FAN25G0364 Fragaria x ananassa HOM05D007542 ORTHO05D009519 8.2e-18 94.4 149 40.3
FAN25G1685 Fragaria x ananassa HOM05D007542 ORTHO05D009519 8.2e-18 94.4 149 40.3
Cc05_g14120 Coffea canephora HOM05D007542 ORTHO05D009519 1.1e-17 94.0 110 51.8
FAN16G3720 Fragaria x ananassa HOM05D007542 ORTHO05D009519 1.1e-17 94.0 149 39.6
FAN21G0453 Fragaria x ananassa HOM05D007542 ORTHO05D009519 1.4e-17 93.6 149 38.9
Prupe.4G220200 Prunus persica HOM05D007542 ORTHO05D009519 1.8e-17 93.2 101 50.5
Cfa020302 Carpinus fangiana HOM05D007542 ORTHO05D009519 2.4e-17 92.8 120 45.0
CiPaw.11G192900 Carya illinoinensis HOM05D007542 ORTHO05D009519 2.4e-17 92.8 119 48.7
Sabra11G0071000 Salix brachista HOM05D007542 ORTHO05D009519 1.6e-16 90.1 103 48.5
Eucgr.F00716 Eucalyptus grandis HOM05D007542 ORTHO05D009519 2.0e-16 89.7 109 49.5
COL.COLO4_09703 Corchorus olitorius HOM05D007542 ORTHO05D009519 3.5e-16 89.0 110 49.1
Actinidia05075 Actinidia chinensis HOM05D007542 ORTHO05D009519 7.7e-16 87.8 110 47.3
Oeu026398.1 Olea europaea HOM05D007542 ORTHO05D009519 1.3e-15 87.0 130 43.8
Gohir.A01G083201 Gossypium hirsutum HOM05D007542 ORTHO05D009519 2.9e-15 85.9 115 49.6
PGSC0003DMG400022335 Solanum tuberosum HOM05D007542 ORTHO05D009519 5.0e-15 85.1 109 48.6
Aqoxy1G03049 Aquilegia oxysepala HOM05D007542 ORTHO05D009519 8.5e-15 84.3 98 54.1
MBI10_g09179_MAGBIO Magnolia biondii HOM05D007542 ORTHO05D009519 1.9e-14 83.2 99 51.5
EL10Ac4g07752 Beta vulgaris HOM05D007542 ORTHO05D009519 2.5e-14 82.8 113 43.4
Migut.H01805 Erythranthe guttata HOM05D007542 ORTHO05D009519 2.5e-14 82.8 136 37.5
Medtr5g093430 Medicago truncatula HOM05D007542 ORTHO05D009519 2.5e-14 82.8 144 42.4
Nn1g07236 Nelumbo nucifera HOM05D007542 ORTHO05D009519 3.2e-14 82.4 109 47.7
Dinv40786 Davidia involucrata HOM05D007542 ORTHO05D009519 5.5e-14 81.6 87 51.7
CAN.G337.69 Capsicum annuum HOM05D007542 ORTHO05D009519 9.4e-14 80.9 130 42.3
Phvul.006G046800 Phaseolus vulgaris HOM05D007542 ORTHO05D009519 9.4e-14 80.9 90 50.0
Ca_06340_v3 Cicer arietinum L. HOM05D007542 ORTHO05D009519 1.2e-13 80.5 97 49.5
Sopen07g033030 Solanum pennellii HOM05D007542 ORTHO05D009519 1.2e-13 80.5 109 47.7
PSO541G2394 Papaver somniferum HOM05D007542 ORTHO05D009519 1.6e-13 80.1 116 44.8
Glyma.18G092800 Glycine max HOM05D007542 ORTHO05D009519 2.1e-13 79.7 91 50.5
Lalb_Chr04g0248281 Lupinus albus HOM05D007542 ORTHO05D009519 3.6e-13 79.0 94 51.1
Psat2g012400 Pisum sativum HOM05D007542 ORTHO05D009519 6.1e-13 78.2 121 45.5
Glyma.08G319700 Glycine max HOM05D007542 ORTHO05D009519 1.0e-12 77.4 91 49.5
LjContig00272g0021523 Lotus japonicus HOM05D007542 ORTHO05D009519 1.0e-12 77.4 92 52.2
TAR624G0015 Trochodendron aralioides HOM05D007542 ORTHO05D009519 1.0e-12 77.4 93 52.7
MELO3C014190.2 Cucumis melo HOM05D007542 ORTHO05D009519 1.8e-12 76.6 136 39.0
MSTRG.12988 Avicennia marina HOM05D007542 ORTHO05D009519 2.3e-12 76.3 96 44.8
Rhsim06G0222000 Rhododendron simsii HOM05D007542 ORTHO05D009519 3.0e-12 75.9 104 45.2
Lj6g0015208 Lotus japonicus HOM05D007542 ORTHO05D009519 5.2e-12 75.1 86 52.3
Aqoxy1G03452 Aquilegia oxysepala HOM05D007542 ORTHO05D009519 6.7e-12 74.7 127 40.9
Medtr5g093440 Medicago truncatula HOM05D007542 ORTHO05D009519 1.5e-11 73.6 128 42.2
Psat2g012360 Pisum sativum HOM05D007542 ORTHO05D009519 2.6e-11 72.8 140 42.1
TPR.G1179 Trifolium pratense HOM05D007542 ORTHO05D009519 2.6e-11 72.8 98 46.9
TPR.G17892 Trifolium pratense HOM05D007542 ORTHO05D009519 5.7e-11 71.6 94 48.9
CsaV3_3G004930 Cucumis sativus L. HOM05D007542 ORTHO05D009519 9.7e-11 70.9 136 36.8
CDE08G0529 Ceratophyllum demersum HOM05D007542 ORTHO05D009519 2.8e-10 69.3 89 48.3
arahy.Tifrunner.gnm1.ann1.ENS6UV Arachis hypogaea HOM05D007542 ORTHO05D009519 3.7e-10 68.9 85 47.1
Glyma.14G021700 Glycine max HOM05D007542 ORTHO05D009519 1.4e-09 67.0 124 42.7
Lj6g0001233 Lotus japonicus HOM05D007542 ORTHO05D009519 1.4e-09 67.0 92 48.9
Oeu008012.1 Olea europaea HOM05D007542 ORTHO05D009519 1.2e-08 63.9 101 42.6
Os01g0532300 Oryza sativa ssp. japonica HOM05D007542 ORTHO05D009519 7.7e-08 61.2 36 75.0
Sc16g0005830 Simmondsia chinensis HOM05D007542 ORTHO05D009519 1.0e-07 60.8 128 36.7
Nitab4.5_0004829g0120 Nicotiana tabacum HOM05D007542 ORTHO05D009519 1.5e-06 57.0 132 37.1
VMungo0647G1207 Vigna mungo HOM05D007542 ORTHO05D009519 1.5e-06 57.0 80 50.0
Sc03g0008420 Simmondsia chinensis HOM05D007542 ORTHO05D009519 2.5e-06 56.2 96 37.5
Phvul.008G269700 Phaseolus vulgaris HOM05D007542 ORTHO05D009519 4.2e-06 55.5 90 47.8
Ca_25812_v3 Cicer arietinum L. HOM05D007542 ORTHO05D009519 9.4e-06 54.3 88 37.5


User provided reference genes

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