Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen10g001890 Solanum pennellii HOM05D004185 ORTHO05D005294 1.0e-154 550.1 281 100.0
Solyc10g005930.2 Solanum lycopersicum HOM05D004185 ORTHO05D005294 3.0e-154 548.5 281 99.6
PGSC0003DMG402004569 Solanum tuberosum HOM05D004185 ORTHO05D005294 1.4e-151 539.7 281 97.9
CAN.G767.4 Capsicum annuum HOM05D004185 ORTHO05D005294 1.2e-139 500.0 282 91.5
Nitab4.5_0000426g0080 Nicotiana tabacum HOM05D004185 ORTHO05D005294 1.2e-123 446.8 295 79.7
Nitab4.5_0002655g0020 Nicotiana tabacum HOM05D004185 ORTHO05D005294 1.6e-123 446.4 285 81.8
Peaxi162Scf00060g00441 Petunia axillaris HOM05D004185 ORTHO05D005294 1.6e-123 446.4 262 85.9
Oeu023432.1 Olea europaea HOM05D004185 ORTHO05D005294 1.7e-109 399.8 281 73.7
GSVIVG01032967001 Vitis vinifera HOM05D004185 ORTHO05D005294 1.6e-107 393.3 285 72.6
TPR.G26467 Trifolium pratense HOM05D004185 ORTHO05D005294 1.9e-105 386.3 231 84.8
Atru.chr3.2840 Acer truncatum HOM05D004185 ORTHO05D005294 5.7e-105 384.8 285 72.6
SGA_v2.0_scaffold114G31833 Striga asiatica HOM05D004185 ORTHO05D005294 5.7e-105 384.8 279 71.7
PSO478G4545 Papaver somniferum HOM05D004185 ORTHO05D005294 1.6e-104 383.3 273 71.4
Psat3g092000 Pisum sativum HOM05D004185 ORTHO05D005294 1.6e-104 383.3 231 84.0
Medtr7g084480 Medicago truncatula HOM05D004185 ORTHO05D005294 3.7e-104 382.1 231 84.8
PSO017G0731 Papaver somniferum HOM05D004185 ORTHO05D005294 3.7e-104 382.1 258 74.8
Ciclev10005565m.g Citrus clementina HOM05D004185 ORTHO05D005294 6.3e-104 381.3 283 72.8
Hma1.2p1_0565F.1_g179520 Hydrangea macrophylla HOM05D004185 ORTHO05D005294 1.1e-103 380.6 289 69.2
Rhsim01G0198500 Rhododendron simsii HOM05D004185 ORTHO05D005294 1.2e-102 377.1 285 69.5
Ca_08226_v3 Cicer arietinum L. HOM05D004185 ORTHO05D005294 2.0e-102 376.3 231 81.0
Cfa007152 Carpinus fangiana HOM05D004185 ORTHO05D005294 3.4e-102 375.6 286 69.6
arahy.Tifrunner.gnm1.ann1.J4TN1Z Arachis hypogaea HOM05D004185 ORTHO05D005294 4.5e-102 375.2 245 76.7
arahy.Tifrunner.gnm1.ann1.DC6XCB Arachis hypogaea HOM05D004185 ORTHO05D005294 5.9e-102 374.8 245 76.7
Lalb_Chr02g0153581 Lupinus albus HOM05D004185 ORTHO05D005294 1.7e-101 373.2 280 70.7
Thecc.04G049500 Theobroma cacao HOM05D004185 ORTHO05D005294 1.7e-101 373.2 284 67.3
CANSAT80G1231 Cannabis sativa HOM05D004185 ORTHO05D005294 6.5e-101 371.3 282 68.8
MBI07_g13955_MAGBIO Magnolia biondii HOM05D004185 ORTHO05D005294 8.5e-101 370.9 267 72.3
TAR374G1058 Trochodendron aralioides HOM05D004185 ORTHO05D005294 8.5e-101 370.9 281 69.8
Sc07g0003880 Simmondsia chinensis HOM05D004185 ORTHO05D005294 1.1e-100 370.5 286 68.5
Lj1g0009190 Lotus japonicus HOM05D004185 ORTHO05D005294 1.4e-100 370.2 231 81.0
Actinidia19546 Actinidia chinensis HOM05D004185 ORTHO05D005294 1.9e-100 369.8 284 67.3
Actinidia37713 Actinidia chinensis HOM05D004185 ORTHO05D005294 1.9e-100 369.8 282 68.8
Haze_14968 Corylus avellana HOM05D004185 ORTHO05D005294 1.9e-100 369.8 286 69.6
ECA232G0163 Erigeron canadensis HOM05D004185 ORTHO05D005294 1.9e-100 369.8 261 71.3
Lj1A1083G27 Lonicera japonica HOM05D004185 ORTHO05D005294 1.9e-100 369.8 286 68.9
QL08p064476 Quercus lobata HOM05D004185 ORTHO05D005294 2.5e-100 369.4 231 80.5
Duzib084G1135 Durio zibethinus HOM05D004185 ORTHO05D005294 3.2e-100 369.0 284 66.9
HanXRQChr03g0070171 Helianthus annuus HOM05D004185 ORTHO05D005294 3.2e-100 369.0 252 73.4
Migut.D01934 Erythranthe guttata HOM05D004185 ORTHO05D005294 4.2e-100 368.6 279 69.5
Prupe.6G095300 Prunus persica HOM05D004185 ORTHO05D005294 5.5e-100 368.2 287 66.6
Eucgr.F01985 Eucalyptus grandis HOM05D004185 ORTHO05D005294 9.4e-100 367.5 236 75.8
Glyma.16G046900 Glycine max HOM05D004185 ORTHO05D005294 9.4e-100 367.5 233 81.1
HanXRQChr05g0146191 Helianthus annuus HOM05D004185 ORTHO05D005294 1.6e-99 366.7 267 70.0
Manes.11G075000 Manihot esculenta HOM05D004185 ORTHO05D005294 1.6e-99 366.7 285 67.4
VMungo0464G1671 Vigna mungo HOM05D004185 ORTHO05D005294 1.6e-99 366.7 282 71.3
Lj2g0021694 Lotus japonicus HOM05D004185 ORTHO05D005294 2.7e-99 365.9 231 80.1
PGR142G0491 Punica granatum HOM05D004185 ORTHO05D005294 2.7e-99 365.9 281 69.0
Aqoxy6G01376 Aquilegia oxysepala HOM05D004185 ORTHO05D005294 4.6e-99 365.2 231 79.2
Gohir.A09G051200 Gossypium hirsutum HOM05D004185 ORTHO05D005294 4.6e-99 365.2 286 65.0
CiPaw.07G054200 Carya illinoinensis HOM05D004185 ORTHO05D005294 1.0e-98 364.0 265 71.3
vmacro18393 Vaccinium macrocarpon HOM05D004185 ORTHO05D005294 1.0e-98 364.0 285 69.1
AT1G31860 Arabidopsis thaliana HOM05D004185 ORTHO05D005294 3.0e-98 362.5 278 68.7
Rhsim08G0038300 Rhododendron simsii HOM05D004185 ORTHO05D005294 3.9e-98 362.1 282 68.4
Gorai.002G196300 Gossypium raimondii HOM05D004185 ORTHO05D005294 6.7e-98 361.3 289 64.4
Nn1g02944 Nelumbo nucifera HOM05D004185 ORTHO05D005294 6.7e-98 361.3 232 76.7
AUR62021660 Chenopodium quinoa HOM05D004185 ORTHO05D005294 8.8e-98 360.9 254 70.1
Gohir.D01G158300 Gossypium hirsutum HOM05D004185 ORTHO05D005294 8.8e-98 360.9 289 64.4
Lsat_1_v5_gn_9_110520 Lactuca sativa HOM05D004185 ORTHO05D005294 1.5e-97 360.1 248 73.8
Sabra16G0256800 Salix brachista HOM05D004185 ORTHO05D005294 1.5e-97 360.1 245 70.6
AL1G45960 Arabidopsis lyrata HOM05D004185 ORTHO05D005294 2.6e-97 359.4 277 67.9
AUR62008433 Chenopodium quinoa HOM05D004185 ORTHO05D005294 3.3e-97 359.0 254 69.7
TAR622G0010 Trochodendron aralioides HOM05D004185 ORTHO05D005294 3.3e-97 359.0 230 77.8
A09p34390 Brassica napus HOM05D004185 ORTHO05D005294 9.7e-97 357.5 273 68.9
BraA09t38984Z Brassica rapa HOM05D004185 ORTHO05D005294 9.7e-97 357.5 273 68.9
CARHR031200 Cardamine hirsuta HOM05D004185 ORTHO05D005294 1.7e-96 356.7 283 66.8
Cpa.g.sc139.45 Carica papaya HOM05D004185 ORTHO05D005294 1.7e-96 356.7 229 77.7
BcaB03g13785 Brassica carinata HOM05D004185 ORTHO05D005294 3.7e-96 355.5 275 68.0
MD11G1131000 Malus domestica HOM05D004185 ORTHO05D005294 4.8e-96 355.1 230 76.1
Atru.chr11.1029 Acer truncatum HOM05D004185 ORTHO05D005294 8.2e-96 354.4 260 70.4
BcaB07g32843 Brassica carinata HOM05D004185 ORTHO05D005294 8.2e-96 354.4 276 68.1
COL.COLO4_05853 Corchorus olitorius HOM05D004546 ORTHO05D005294 8.2e-96 354.4 229 76.9
Potri.001G391400 Populus trichocarpa HOM05D004185 ORTHO05D005294 1.8e-95 353.2 240 72.9
DCAR_009570 Daucus carota HOM05D004185 ORTHO05D005294 2.4e-95 352.8 246 72.8
Thhalv10008417m.g Eutrema salsugineum HOM05D004185 ORTHO05D005294 2.4e-95 352.8 275 67.3
BcaC05g27950 Brassica carinata HOM05D004185 ORTHO05D005294 3.1e-95 352.4 290 64.8
C05p39540 Brassica napus HOM05D004185 ORTHO05D005294 3.1e-95 352.4 290 64.8
BolC5t32695H Brassica oleracea HOM05D004185 ORTHO05D005294 3.1e-95 352.4 290 64.8
SalBow2G1694 Salvia bowleyana HOM05D004185 ORTHO05D005294 6.9e-95 351.3 224 78.1
MD03G1104500 Malus domestica HOM05D004185 ORTHO05D005294 9.1e-95 350.9 231 75.8
THA.LOC104812726 Tarenaya hassleriana HOM05D004185 ORTHO05D005294 9.1e-95 350.9 264 69.3
EL10Ac5g11038 Beta vulgaris HOM05D004185 ORTHO05D005294 1.2e-94 350.5 267 67.0
TWI63G0858 Tripterygium wilfordii HOM05D004185 ORTHO05D005294 2.0e-94 349.7 290 64.5
Sp1g27580 Schrenkiella parvula HOM05D004185 ORTHO05D005294 2.6e-94 349.4 279 66.7
unitig_0.g1440 Utricularia gibba HOM05D004185 ORTHO05D005294 3.4e-94 349.0 282 66.0
Aa31LG2G14180 Aethionema arabicum HOM05D004185 ORTHO05D005294 4.5e-94 348.6 283 65.0
RcHm_v2.0_Chr7g0223141 Rosa chinensis HOM05D004185 ORTHO05D005294 4.5e-94 348.6 247 70.4
MSTRG.11461 Avicennia marina HOM05D004185 ORTHO05D005294 1.0e-93 347.4 224 78.6
BraA05t21430Z Brassica rapa HOM05D004185 ORTHO05D005294 2.9e-93 345.9 292 64.0
FAN21G3167 Fragaria x ananassa HOM05D004185 ORTHO05D005294 2.9e-93 345.9 287 63.4
A05p25460 Brassica napus HOM05D004185 ORTHO05D005294 3.8e-93 345.5 290 64.1
FAN05G5133 Fragaria x ananassa HOM05D004185 ORTHO05D005294 5.0e-93 345.1 285 63.5
BcaC05g27215 Brassica carinata HOM05D004185 ORTHO05D005294 2.5e-92 342.8 280 66.1
BolC5t31845H Brassica oleracea HOM05D004185 ORTHO05D005294 2.5e-92 342.8 280 66.1
FAN14G0322 Fragaria x ananassa HOM05D004185 ORTHO05D005294 2.5e-92 342.8 292 62.7
FvH4_3g33130 Fragaria vesca HOM05D004185 ORTHO05D005294 5.5e-92 341.7 287 63.1
ATR0602G180 Amborella trichopoda HOM05D004185 ORTHO05D005294 1.2e-91 340.5 263 66.5
FAN16G0073 Fragaria x ananassa HOM05D004185 ORTHO05D005294 2.7e-91 339.3 292 62.3
CDE09G0075 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 1.1e-89 334.0 234 70.1
SEGI_19426 Sequoiadendron giganteum HOM05D004185 ORTHO05D005294 2.0e-89 333.2 233 70.4
MELO3C005094.2 Cucumis melo HOM05D004185 ORTHO05D005294 2.6e-89 332.8 245 67.8
CsaV3_5G025000 Cucumis sativus L. HOM05D004185 ORTHO05D005294 1.7e-88 330.1 245 66.9
Os01g0276500 Oryza sativa ssp. japonica HOM05D004185 ORTHO05D005294 2.8e-88 329.3 235 68.9
ClCG01G007890 Citrullus lanatus HOM05D004185 ORTHO05D005294 3.7e-88 328.9 235 67.2
Gorai.006G057300 Gossypium raimondii HOM05D004185 ORTHO05D005294 1.8e-87 326.6 286 60.1
Zm00001eb332710 Zea mays HOM05D004185 ORTHO05D005294 1.8e-87 326.6 233 70.0
FAN25G2535 Fragaria x ananassa HOM05D004185 ORTHO05D005294 2.9e-85 319.3 286 60.1
Phvul.001G082700 Phaseolus vulgaris HOM05D004185 ORTHO05D005294 2.1e-83 313.2 201 80.1
SHI18823 Sapria himalayana HOM05D004185 ORTHO05D005294 2.7e-83 312.8 255 64.7
Cc02_g08450 Coffea canephora HOM05D004185 ORTHO05D005294 2.3e-82 309.7 202 78.2
SMO119G0194 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 2.3e-82 309.7 278 59.7
Mapoly0010s0125 Marchantia polymorpha HOM05D004185 ORTHO05D005294 4.0e-82 308.9 249 64.3
Hund11935 Selenicereus undatus HOM05D004185 ORTHO05D005294 1.5e-81 307.0 201 74.1
AagrBONN_evm.TU.Sc2ySwM_228.4587 Anthoceros agrestis HOM05D004185 ORTHO05D005294 3.3e-81 305.8 231 67.5
CDE02G0170 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 2.8e-80 302.8 247 62.3
arahy.Tifrunner.gnm1.ann1.75SEPN Arachis hypogaea HOM05D004185 ORTHO05D005294 3.7e-80 302.4 245 65.3
CSS0049496 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 4.8e-80 302.0 192 78.6
Carub.0001s3019 Capsella rubella HOM05D004185 ORTHO05D005294 5.3e-79 298.5 199 74.9
Sed0024479 Sechium edule HOM05D004185 ORTHO05D005294 3.5e-78 295.8 199 71.4
RcHm_v2.0_Chr5g0060441 Rosa chinensis HOM05D004185 ORTHO05D005294 1.7e-77 293.5 201 72.1
Pp3c19_11880 Physcomitrium patens HOM05D004185 ORTHO05D005294 1.5e-76 290.4 229 65.1
MD03G1104300 Malus domestica HOM05D004185 ORTHO05D005294 1.2e-75 287.3 237 65.0
CBR_g41148 Chara braunii HOM05D004185 ORTHO05D005294 4.0e-74 282.3 240 62.1
HPP92_023021 Vanilla planifolia HOM05D004185 ORTHO05D005294 4.0e-74 282.3 199 70.4
Haze_15442 Corylus avellana HOM05D004185 ORTHO05D005294 5.2e-74 282.0 227 66.1
Gohir.D09G052300 Gossypium hirsutum HOM05D004185 ORTHO05D005294 4.4e-73 278.9 201 68.7
MBI07_g07565_MAGBIO Magnolia biondii HOM05D004185 ORTHO05D005294 3.1e-71 272.7 167 82.0
CBR_g45683 Chara braunii HOM05D004185 ORTHO05D005294 2.0e-70 270.0 229 62.0
MCO14G189 Micromonas commoda HOM05D004185 ORTHO05D005294 1.7e-69 266.9 234 59.8
FvH4_6g09080 Fragaria vesca HOM05D004185 ORTHO05D005294 5.5e-68 261.9 220 62.7
CSS0023313 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 1.6e-67 260.4 187 73.3
FAN02G1839 Fragaria x ananassa HOM05D004185 ORTHO05D005294 2.8e-67 259.6 233 60.1
C05p31190 Brassica napus HOM05D004185 ORTHO05D005294 3.0e-66 256.1 275 53.5
CSS0015772 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 5.4e-63 245.4 191 67.0
Cre13.g576650 Chlamydomonas reinhardtii HOM05D004185 ORTHO05D005294 1.3e-61 240.7 234 55.1
PRCOL_00000818 Prasinoderma coloniale HOM05D004185 ORTHO05D005294 6.6e-61 238.4 227 55.1
Gorai.008G088200 Gossypium raimondii HOM05D004185 ORTHO05D005294 1.3e-56 224.2 286 45.1
Cc00_g25400 Coffea canephora HOM05D004185 ORTHO05D005294 1.2e-54 217.6 146 76.0
QL02p069093 Quercus lobata HOM05D004185 ORTHO05D005294 1.9e-52 210.3 148 70.9
Nn7g37500 Nelumbo nucifera HOM05D004185 ORTHO05D005294 2.8e-51 206.5 154 65.6
Dinv33271 Davidia involucrata HOM05D004185 ORTHO05D005294 5.2e-50 202.2 170 62.4
Gorai.007G236100 Gossypium raimondii HOM05D004185 ORTHO05D005294 1.1e-42 177.9 131 66.4
Gohir.D11G219700 Gossypium hirsutum HOM05D004185 ORTHO05D005294 2.0e-41 173.7 131 66.4
vmacro12996 Vaccinium macrocarpon HOM05D004185 ORTHO05D005294 1.0e-37 161.4 158 58.9
Gohir.1Z049352 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.3e-37 161.0 138 58.0
Gohir.D12G080201 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.3e-37 161.0 138 58.0
Gohir.1Z049452 Gossypium hirsutum HOM05D004185 ORTHO05D005294 3.9e-37 159.5 133 61.7
CDE01G0632 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 7.6e-33 145.2 118 63.6
Prupe.6G096900 Prunus persica HOM05D004185 ORTHO05D005294 9.9e-33 144.8 124 60.5
Gohir.D11G259201 Gossypium hirsutum HOM05D002015 ORTHO05D016007 4.7e-27 125.9 74 81.1
MD03G1104400 Malus domestica HOM05D004185 ORTHO05D005294 1.1e-26 124.8 157 47.1
Gohir.D01G143966 Gossypium hirsutum HOM05D002015 ORTHO05D016007 1.8e-26 124.0 74 79.7
Gohir.D02G127900 Gossypium hirsutum HOM05D002015 ORTHO05D016007 2.4e-26 123.6 74 79.7
Gorai.002G177700 Gossypium raimondii HOM05D002015 ORTHO05D016007 3.1e-26 123.2 74 79.7
Gohir.D04G064100 Gossypium hirsutum HOM05D002015 ORTHO05D016007 1.2e-25 121.3 74 77.0
Ca_29370_v3 Cicer arietinum L. HOM05D004185 ORTHO05D005294 7.1e-23 112.1 192 36.5
Nn7g37501 Nelumbo nucifera HOM05D004185 ORTHO05D005294 7.3e-20 102.1 72 70.8
arahy.Tifrunner.gnm1.ann1.R9VNWC Arachis hypogaea HOM05D004185 ORTHO05D085194 1.6e-19 100.9 90 58.9
QL02p069129 Quercus lobata HOM05D004185 ORTHO05D005294 9.9e-17 91.7 66 71.2
SMO179G0001 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 4.9e-16 89.4 64 70.3
QL02p068903 Quercus lobata HOM05D004185 ORTHO05D005294 2.1e-14 84.0 65 70.8
QL02p069147 Quercus lobata HOM05D004185 ORTHO05D005294 2.3e-13 80.5 68 63.2
Glyma.11G241900 Glycine max HOM05D004185 ORTHO05D005294 6.7e-13 79.0 64 62.5
Gorai.005G143700 Gossypium raimondii HOM05D004185 ORTHO05D016007 5.6e-12 75.9 44 79.5
Gohir.D13G151200 Gossypium hirsutum HOM05D004185 ORTHO05D016007 6.2e-11 72.4 44 72.7
SMO119G0521 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 8.1e-11 72.0 64 59.4
QL02p069014 Quercus lobata HOM05D004185 ORTHO05D005294 9.0e-10 68.6 46 71.7
Cfa023091 Carpinus fangiana HOM05D004109 ORTHO05D005867 3.4e-09 66.6 261 26.4
DCAR_020016 Daucus carota HOM05D004185 ORTHO05D005294 7.6e-09 65.5 62 56.5
RcHm_v2.0_Chr5g0060451 Rosa chinensis HOM05D004185 ORTHO05D005294 7.9e-06 55.5 82 43.9


User provided reference genes

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