Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen10g001810 Solanum pennellii HOM05D005351 ORTHO05D006542 0.0e+00 1593.6 844 100.0
Solyc10g005850.4 Solanum lycopersicum HOM05D005351 ORTHO05D006542 0.0e+00 1484.2 845 94.9
PGSC0003DMG400014404 Solanum tuberosum HOM05D005351 ORTHO05D006542 0.0e+00 1437.6 847 92.1
CAN.G492.50 Capsicum annuum HOM05D005351 ORTHO05D006542 0.0e+00 1278.5 846 83.3
Nitab4.5_0003328g0090 Nicotiana tabacum HOM05D005351 ORTHO05D006542 0.0e+00 1224.5 850 79.9
Nitab4.5_0005478g0030 Nicotiana tabacum HOM05D005351 ORTHO05D006542 0.0e+00 1218.4 850 80.0
Peaxi162Scf00018g00155 Petunia axillaris HOM05D005351 ORTHO05D006542 2.7e-304 1048.5 825 73.0
Cc05_g15290 Coffea canephora HOM05D005351 ORTHO05D006542 7.6e-129 465.7 913 41.2
CSS0045517 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 6.4e-128 462.6 938 40.4
CSS0029070 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 7.1e-127 459.1 938 40.4
Dinv40885 Davidia involucrata HOM05D005351 ORTHO05D006542 2.7e-126 457.2 885 42.8
Prupe.6G028400 Prunus persica HOM05D005351 ORTHO05D006542 4.5e-121 439.9 923 40.7
Actinidia03651 Actinidia chinensis HOM05D005351 ORTHO05D006542 9.9e-121 438.7 875 41.0
Haze_09867 Corylus avellana HOM05D005351 ORTHO05D006542 4.8e-115 419.9 921 39.5
Oeu049420.1 Olea europaea HOM05D005351 ORTHO05D006542 6.9e-114 416.0 933 38.5
Cfa021891 Carpinus fangiana HOM05D005351 ORTHO05D006542 2.6e-113 414.1 926 40.0
Sabra16G0244200 Salix brachista HOM05D005351 ORTHO05D006542 7.6e-113 412.5 940 38.7
TAR626G0279 Trochodendron aralioides HOM05D005351 ORTHO05D006542 1.0e-112 412.1 961 39.2
MD11G1037100 Malus domestica HOM05D005351 ORTHO05D006542 1.4e-111 408.3 920 38.2
SGA_v2.0_scaffold168G38576 Striga asiatica HOM05D005351 ORTHO05D006542 9.3e-111 405.6 789 41.4
SalBow8G3039 Salvia bowleyana HOM05D005351 ORTHO05D006542 2.7e-110 404.1 921 39.3
MD03G1035400 Malus domestica HOM05D005351 ORTHO05D006542 3.5e-110 403.7 926 38.7
RcHm_v2.0_Chr5g0075571 Rosa chinensis HOM05D005351 ORTHO05D006542 7.9e-110 402.5 913 37.6
VMungo0540G1402 Vigna mungo HOM05D005351 ORTHO05D006542 3.0e-109 400.6 934 37.7
GSVIVG01014743001 Vitis vinifera HOM05D005351 ORTHO05D006542 3.9e-109 400.2 857 37.5
Phvul.006G059260 Phaseolus vulgaris HOM05D005351 ORTHO05D006542 6.7e-109 399.4 942 37.3
Potri.001G371600 Populus trichocarpa HOM05D005351 ORTHO05D006542 6.7e-109 399.4 869 38.8
Manes.01G003500 Manihot esculenta HOM05D005351 ORTHO05D006542 5.3e-106 389.8 937 37.6
MSTRG.15808 Avicennia marina HOM05D005351 ORTHO05D006542 5.9e-105 386.3 955 37.0
QL08p002685 Quercus lobata HOM05D005351 ORTHO05D006542 2.2e-104 384.4 949 37.4
Lj8A180G96 Lonicera japonica HOM05D005351 ORTHO05D006542 3.8e-104 383.6 926 37.4
Migut.M01635 Erythranthe guttata HOM05D005351 ORTHO05D006542 5.0e-104 383.3 903 38.4
FAN11G1247 Fragaria x ananassa HOM05D005351 ORTHO05D006542 1.4e-103 381.7 902 37.0
Rhsim04G0010500 Rhododendron simsii HOM05D005351 ORTHO05D006542 1.9e-103 381.3 834 39.2
FAN21G2745 Fragaria x ananassa HOM05D005351 ORTHO05D006542 7.2e-103 379.4 904 37.6
Duzib213G0009 Durio zibethinus HOM05D005351 ORTHO05D006542 9.3e-103 379.0 926 37.9
Nn1g02046 Nelumbo nucifera HOM05D005351 ORTHO05D006542 1.2e-102 378.6 958 36.4
vmacro09623 Vaccinium macrocarpon HOM05D005351 ORTHO05D006542 1.6e-102 378.3 904 38.9
FAN16G2746 Fragaria x ananassa HOM05D005351 ORTHO05D006542 7.9e-102 375.9 902 36.8
FAN25G1298 Fragaria x ananassa HOM05D005351 ORTHO05D006542 6.7e-101 372.9 899 36.6
TWI38G2212 Tripterygium wilfordii HOM05D005351 ORTHO05D006542 8.7e-101 372.5 967 36.6
Dinv10362 Davidia involucrata HOM05D005351 ORTHO05D006542 4.8e-99 366.7 777 40.2
Gohir.A04G005700 Gossypium hirsutum HOM05D005351 ORTHO05D006542 6.3e-99 366.3 935 37.3
Glyma.08G332700 Glycine max HOM05D005351 ORTHO05D006542 5.3e-98 363.2 902 36.8
Lj6g0009098 Lotus japonicus HOM05D005351 ORTHO05D006542 1.5e-97 361.7 929 37.5
Gorai.009G450800 Gossypium raimondii HOM05D005351 ORTHO05D006542 2.6e-97 360.9 932 37.3
CiPaw.12G140700 Carya illinoinensis HOM05D005351 ORTHO05D006542 4.5e-97 360.1 802 38.8
Gohir.D05G384000 Gossypium hirsutum HOM05D005351 ORTHO05D006542 5.0e-96 356.7 936 36.9
HanXRQChr11g0334131 Helianthus annuus HOM05D005351 ORTHO05D006542 2.5e-95 354.4 862 36.4
Medtr3g461030 Medicago truncatula HOM05D005351 ORTHO05D006542 4.2e-95 353.6 944 36.8
DCAR_013254 Daucus carota HOM05D005351 ORTHO05D006542 1.5e-92 345.1 914 35.3
TWI38G1324 Tripterygium wilfordii HOM05D005351 ORTHO05D006542 3.3e-92 344.0 955 35.2
Ciclev10007493m.g Citrus clementina HOM05D005351 ORTHO05D006542 5.7e-92 343.2 842 37.1
CANSAT11G0508 Cannabis sativa HOM05D005351 ORTHO05D006542 7.4e-92 342.8 819 36.6
COL.COLO4_07741 Corchorus olitorius HOM05D005351 ORTHO05D006542 1.7e-91 341.7 924 35.5
PGR083G0334 Punica granatum HOM05D005351 ORTHO05D006542 2.2e-91 341.3 923 35.1
Glyma.18G074300 Glycine max HOM05D005351 ORTHO05D006542 3.7e-91 340.5 909 35.8
PSO210G4843 Papaver somniferum HOM05D005351 ORTHO05D006542 4.8e-91 340.1 892 36.8
Ca_12455_v3 Cicer arietinum L. HOM05D005351 ORTHO05D006542 6.3e-91 339.7 931 35.2
Lalb_Chr15g0082311 Lupinus albus HOM05D005351 ORTHO05D006542 6.3e-91 339.7 943 35.9
Nn3g19476 Nelumbo nucifera HOM05D005351 ORTHO05D006542 6.3e-91 339.7 972 34.8
Thecc.07G007900 Theobroma cacao HOM05D005351 ORTHO05D006542 3.4e-89 334.0 955 35.6
Eucgr.F02026 Eucalyptus grandis HOM05D005351 ORTHO05D006542 4.5e-89 333.6 825 36.5
PSO210G4950 Papaver somniferum HOM05D005351 ORTHO05D006542 4.5e-89 333.6 888 36.5
THA.LOC104815687 Tarenaya hassleriana HOM05D005351 ORTHO05D006542 6.5e-88 329.7 909 35.9
Hma1.2p1_0193F.1_g083920 Hydrangea macrophylla HOM05D005351 ORTHO05D006542 1.4e-87 328.6 996 34.1
Psat5g166400 Pisum sativum HOM05D005351 ORTHO05D006542 3.2e-87 327.4 958 35.5
TPR.G17956 Trifolium pratense HOM05D005351 ORTHO05D006542 3.2e-87 327.4 939 35.1
Aqoxy1G04296 Aquilegia oxysepala HOM05D005351 ORTHO05D006542 7.2e-87 326.2 907 35.4
AUR62017130 Chenopodium quinoa HOM05D005351 ORTHO05D006542 2.7e-86 324.3 943 35.0
Carub.0003s1261 Capsella rubella HOM05D005351 ORTHO05D006542 5.2e-85 320.1 917 33.7
Hund23091 Selenicereus undatus HOM05D005351 ORTHO05D006542 1.1e-84 318.9 927 36.0
ECA236G3149 Erigeron canadensis HOM05D005351 ORTHO05D006542 1.3e-83 315.5 873 35.2
AT3G13225 Arabidopsis thaliana HOM05D005351 ORTHO05D006542 1.7e-83 315.1 912 34.8
AUR62035679 Chenopodium quinoa HOM05D005351 ORTHO05D006542 9.1e-82 309.3 939 34.7
FvH4_3g42241 Fragaria vesca HOM05D005351 ORTHO05D006542 1.1e-79 302.4 833 35.8
EL10Ac4g07541 Beta vulgaris HOM05D005351 ORTHO05D006542 3.3e-76 290.8 927 34.0
unitig_0.g707 Utricularia gibba HOM05D005351 ORTHO05D006542 9.7e-76 289.3 907 32.9
Sp3g11430 Schrenkiella parvula HOM05D005351 ORTHO05D006542 1.3e-75 288.9 909 33.0
Cpa.g.sc12.108 Carica papaya HOM05D005351 ORTHO05D006542 2.8e-75 287.7 855 33.5
BolC1t05130H Brassica oleracea HOM05D005351 ORTHO05D006542 2.4e-74 284.6 912 32.2
CsaV3_7G023840 Cucumis sativus L. HOM05D005351 ORTHO05D006542 5.3e-74 283.5 930 32.8
AL3G25030 Arabidopsis lyrata HOM05D005351 ORTHO05D006542 7.0e-74 283.1 854 33.1
BcaC09g48295 Brassica carinata HOM05D005351 ORTHO05D006542 9.1e-74 282.7 912 32.1
Ah.06g181500 Amaranthus hybridus HOM05D005351 ORTHO05D006542 2.0e-73 281.6 922 33.6
BraA01t04066Z Brassica rapa HOM05D005351 ORTHO05D006542 4.5e-73 280.4 895 33.9
A01p40300 Brassica napus HOM05D005351 ORTHO05D006542 5.9e-73 280.0 895 33.9
C01p51820 Brassica napus HOM05D005351 ORTHO05D006542 5.9e-73 280.0 908 33.1
BcaB04g21006 Brassica carinata HOM05D005351 ORTHO05D006542 5.5e-71 273.5 901 32.4
Sed0019267 Sechium edule HOM05D005351 ORTHO05D006542 7.2e-71 273.1 927 33.0
Thhalv10020110m.g Eutrema salsugineum HOM05D005351 ORTHO05D006542 2.1e-70 271.6 834 35.3
CARHR087840 Cardamine hirsuta HOM05D005351 ORTHO05D006542 3.6e-70 270.8 828 33.7
arahy.Tifrunner.gnm1.ann1.1R5J8M Arachis hypogaea HOM05D005351 ORTHO05D006542 8.0e-70 269.6 916 33.4
Atru.chr2.3836 Acer truncatum HOM05D005351 ORTHO05D006542 1.0e-69 269.2 770 34.8
ATR0751G017 Amborella trichopoda HOM05D005351 ORTHO05D006542 1.4e-69 268.9 994 31.1
MBI14_g37362_MAGBIO Magnolia biondii HOM05D005351 ORTHO05D006542 2.6e-68 264.6 905 31.2
ClCG09G021540 Citrullus lanatus HOM05D005351 ORTHO05D006542 5.7e-68 263.5 1023 31.9
Sc03g0011530 Simmondsia chinensis HOM05D005351 ORTHO05D006542 5.9e-65 253.4 730 35.3
Os06g0298400 Oryza sativa ssp. japonica HOM05D005351 ORTHO05D006542 7.7e-65 253.1 884 32.1
Aa31LG8G460 Aethionema arabicum HOM05D005351 ORTHO05D006542 1.7e-64 251.9 891 32.2
HPP92_017874 Vanilla planifolia HOM05D005351 ORTHO05D006542 1.3e-59 235.7 867 32.8
Lsat_1_v5_gn_7_114900 Lactuca sativa HOM05D005351 ORTHO05D006542 8.3e-59 233.0 867 32.3
arahy.Tifrunner.gnm1.ann1.LDHF9L Arachis hypogaea HOM05D005351 ORTHO05D006542 1.8e-58 231.9 918 31.6
CDE05G2589 Ceratophyllum demersum HOM05D005351 ORTHO05D006542 7.0e-58 229.9 916 30.5
CDE05G0998 Ceratophyllum demersum HOM05D005351 ORTHO05D006542 6.6e-56 223.4 776 31.4
Zm00001eb381020 Zea mays HOM05D005351 ORTHO05D006542 4.0e-53 214.2 888 30.6
SEGI_31992 Sequoiadendron giganteum HOM05D005351 ORTHO05D006542 5.2e-53 213.8 1035 28.4
Actinidia00844 Actinidia chinensis HOM05D005351 ORTHO05D006542 9.2e-50 203.0 399 41.1
CSS0028997 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 1.6e-46 192.2 416 35.8
PSO782G2183 Papaver somniferum HOM05D005351 ORTHO05D006542 1.6e-46 192.2 148 68.9
CSS0030315 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 1.4e-45 189.1 416 35.6
Oeu017994.1 Olea europaea HOM05D005351 ORTHO05D006542 3.1e-45 188.0 250 52.0
Zm00001eb281160 Zea mays HOM05D005351 ORTHO05D006542 4.0e-45 187.6 856 28.9
MELO3C024969.2 Cucumis melo HOM05D005351 ORTHO05D006542 1.1e-42 179.5 832 29.2
MBI14_g27041_MAGBIO Magnolia biondii HOM05D005351 ORTHO05D006542 1.1e-34 152.9 156 57.1
CBR_g12012 Chara braunii HOM05D005351 ORTHO05D006542 8.6e-32 143.3 219 44.7
SMO164G0196 Selaginella moellendorffii HOM05D005351 ORTHO05D006542 5.2e-29 134.0 153 50.3
AagrBONN_evm.TU.Sc2ySwM_368.1722__1723 Anthoceros agrestis HOM05D005351 ORTHO05D006542 2.0e-28 132.1 998 25.5
HPP92_028497 Vanilla planifolia HOM05D005351 ORTHO05D006542 1.0e-24 119.8 161 46.0
Hma1.2p1_3473F.1_g336240 Hydrangea macrophylla HOM05D005351 ORTHO05D006542 3.1e-21 108.2 291 37.1
vmacro11082 Vaccinium macrocarpon HOM05D000009 ORTHO05D006542 8.4e-19 100.1 97 61.9
PSO782G1978 Papaver somniferum HOM05D005351 ORTHO05D006542 1.7e-16 92.4 442 32.8
Dinv10361 Davidia involucrata HOM05D005351 ORTHO05D006542 4.3e-15 87.8 73 58.9
Pp3c7_8580 Physcomitrium patens HOM05D005351 ORTHO05D006542 5.6e-15 87.4 933 24.5
Cre09.g388430 Chlamydomonas reinhardtii HOM05D005351 ORTHO05D006542 9.6e-15 86.7 192 34.4
Oeu017995.1 Olea europaea HOM05D005351 ORTHO05D006542 3.4e-12 78.2 246 31.3
Lsat_1_v5_gn_6_88041 Lactuca sativa HOM05D005351 ORTHO05D006542 1.1e-10 73.2 166 31.3
AagrBONN_evm.TU.Sc2ySwM_368.1723 Anthoceros agrestis HOM05D005351 ORTHO05D006542 3.2e-10 71.6 792 24.0
Cc00_g23250 Coffea canephora HOM05D000874 ORTHO05D001049 2.1e-06 58.9 41 56.1


User provided reference genes

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