Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen10g001790 Solanum pennellii HOM05D005240 ORTHO05D006471 2.7e-146 521.9 255 100.0
Solyc10g005830.3 Solanum lycopersicum HOM05D005240 ORTHO05D006471 6.2e-143 510.8 255 98.0
Nitab4.5_0000061g0160 Nicotiana tabacum HOM05D005240 ORTHO05D006471 4.5e-109 398.3 272 76.8
Nitab4.5_0001721g0020 Nicotiana tabacum HOM05D005240 ORTHO05D006471 3.2e-107 392.1 271 76.8
Peaxi162Scf00373g00310 Petunia axillaris HOM05D005240 ORTHO05D006471 2.6e-96 355.9 238 75.6
Cc09_g02730 Coffea canephora HOM05D005240 ORTHO05D006471 8.8e-89 330.9 196 80.6
CSS0026127 Camellia sinensis var. sinensis HOM05D005240 ORTHO05D006471 4.0e-81 305.4 184 77.7
MSTRG.355 Avicennia marina HOM05D005240 ORTHO05D006471 6.8e-81 304.7 252 60.7
Thecc.10G068200 Theobroma cacao HOM05D005240 ORTHO05D006471 1.7e-79 300.1 193 72.5
GSVIVG01016337001 Vitis vinifera HOM05D005240 ORTHO05D006471 5.4e-78 295.0 193 71.0
Gorai.012G093700 Gossypium raimondii HOM05D005240 ORTHO05D006471 7.0e-78 294.7 182 75.8
Gohir.D04G083000 Gossypium hirsutum HOM05D005240 ORTHO05D006471 1.6e-77 293.5 182 75.8
Nn2g13000 Nelumbo nucifera HOM05D005240 ORTHO05D006471 2.0e-77 293.1 198 72.2
TWI15G1019 Tripterygium wilfordii HOM05D005240 ORTHO05D006471 3.5e-77 292.4 184 74.5
Gohir.A05G344500 Gossypium hirsutum HOM05D005240 ORTHO05D006471 4.5e-77 292.0 182 74.7
Migut.F01799 Erythranthe guttata HOM05D005240 ORTHO05D006471 1.3e-76 290.4 182 72.0
QL08p056831 Quercus lobata HOM05D005240 ORTHO05D006471 1.1e-75 287.3 190 69.5
Thecc.10G068300 Theobroma cacao HOM05D005240 ORTHO05D006471 1.9e-75 286.6 185 73.5
Hma1.2p1_0453F.1_g156180 Hydrangea macrophylla HOM05D005240 ORTHO05D006471 3.3e-75 285.8 180 73.3
vmacro17506 Vaccinium macrocarpon HOM05D005240 ORTHO05D006471 3.3e-75 285.8 193 72.5
Eucgr.J01124 Eucalyptus grandis HOM05D005240 ORTHO05D006471 5.5e-75 285.0 180 74.4
HanXRQChr07g0200441 Helianthus annuus HOM05D005240 ORTHO05D006471 5.5e-75 285.0 182 72.5
Actinidia38251 Actinidia chinensis HOM05D005240 ORTHO05D006471 9.5e-75 284.3 193 72.5
arahy.Tifrunner.gnm1.ann1.9PA5H9 Arachis hypogaea HOM05D005240 ORTHO05D006471 9.5e-75 284.3 180 72.8
arahy.Tifrunner.gnm1.ann1.CT8M8A Arachis hypogaea HOM05D005240 ORTHO05D006471 1.6e-74 283.5 181 71.8
Duzib114G0729 Durio zibethinus HOM05D005240 ORTHO05D006471 2.8e-74 282.7 185 70.8
PGR044G1235 Punica granatum HOM05D005240 ORTHO05D006471 2.8e-74 282.7 220 65.9
Atru.chr12.634 Acer truncatum HOM05D005240 ORTHO05D006471 3.6e-74 282.3 195 68.2
Manes.10G042700 Manihot esculenta HOM05D005240 ORTHO05D006471 3.6e-74 282.3 192 69.8
Lsat_1_v5_gn_2_115080 Lactuca sativa HOM05D005240 ORTHO05D006471 6.1e-74 281.6 182 73.6
Duzib128G0461 Durio zibethinus HOM05D005240 ORTHO05D006471 8.0e-74 281.2 193 69.4
Prupe.2G218200 Prunus persica HOM05D005240 ORTHO05D006471 8.0e-74 281.2 183 71.6
CiPaw.01G276500 Carya illinoinensis HOM05D005240 ORTHO05D006471 1.0e-73 280.8 194 67.0
TWI38G0703 Tripterygium wilfordii HOM05D005240 ORTHO05D006471 1.8e-73 280.0 180 73.3
Potri.010G217500 Populus trichocarpa HOM05D005240 ORTHO05D006471 2.3e-73 279.6 193 71.5
Sc14g0005480 Simmondsia chinensis HOM05D005240 ORTHO05D006471 2.3e-73 279.6 180 73.9
Psat6g186000 Pisum sativum HOM05D005240 ORTHO05D006471 3.0e-73 279.3 184 71.7
TAR636G2864 Trochodendron aralioides HOM05D005240 ORTHO05D006471 3.0e-73 279.3 193 69.4
Hund19334 Selenicereus undatus HOM05D005240 ORTHO05D006471 4.0e-73 278.9 181 72.4
Aqoxy4G03197 Aquilegia oxysepala HOM05D005240 ORTHO05D006471 8.9e-73 277.7 182 72.5
RcHm_v2.0_Chr1g0364101 Rosa chinensis HOM05D005240 ORTHO05D006471 1.2e-72 277.3 181 71.8
Lj5g0013716 Lotus japonicus HOM05D005240 ORTHO05D006471 4.4e-72 275.4 200 63.5
THA.LOC104803452 Tarenaya hassleriana HOM05D005240 ORTHO05D006471 4.4e-72 275.4 186 69.9
Ca_10594_v3 Cicer arietinum L. HOM05D005240 ORTHO05D006471 7.5e-72 274.6 183 71.6
MD07G1179100 Malus domestica HOM05D005240 ORTHO05D006471 7.5e-72 274.6 194 69.6
ECA238G3142 Erigeron canadensis HOM05D005240 ORTHO05D006471 1.3e-71 273.9 183 72.7
SGA_v2.0_scaffold122G33245 Striga asiatica HOM05D005240 ORTHO05D006471 2.2e-71 273.1 168 73.8
Sabra10G0168200 Salix brachista HOM05D005240 ORTHO05D006471 2.8e-71 272.7 193 71.0
FvH4_7g20150 Fragaria vesca HOM05D005240 ORTHO05D006471 6.3e-71 271.6 181 71.3
FAN06G0525 Fragaria x ananassa HOM05D005240 ORTHO05D006471 6.3e-71 271.6 181 71.3
arahy.Tifrunner.gnm1.ann1.D7L05R Arachis hypogaea HOM05D005240 ORTHO05D006471 8.3e-71 271.2 180 70.0
Medtr1g095890 Medicago truncatula HOM05D005240 ORTHO05D006471 8.3e-71 271.2 185 70.8
CAN.G492.51 Capsicum annuum HOM05D005240 ORTHO05D006471 4.1e-70 268.9 165 78.2
VMungo0720G3076 Vigna mungo HOM05D005240 ORTHO05D006471 9.2e-70 267.7 181 67.4
Lalb_Chr06g0162141 Lupinus albus HOM05D005240 ORTHO05D006471 2.0e-69 266.5 181 69.1
ECA238G0657 Erigeron canadensis HOM05D005240 ORTHO05D006471 2.7e-69 266.2 178 71.3
Phvul.007G091800 Phaseolus vulgaris HOM05D005240 ORTHO05D006471 2.7e-69 266.2 184 67.9
AL4G31940 Arabidopsis lyrata HOM05D005240 ORTHO05D006471 3.5e-69 265.8 182 69.8
Sp4g18090 Schrenkiella parvula HOM05D005240 ORTHO05D006471 5.9e-69 265.0 182 69.8
BcaB06g28877 Brassica carinata HOM05D005240 ORTHO05D006471 7.8e-69 264.6 182 69.2
FAN10G3611 Fragaria x ananassa HOM05D005240 ORTHO05D006471 7.8e-69 264.6 181 69.6
PSO210G2142 Papaver somniferum HOM05D005240 ORTHO05D006471 7.8e-69 264.6 181 70.2
FAN03G2612 Fragaria x ananassa HOM05D005240 ORTHO05D006471 1.0e-68 264.2 181 69.6
Rhsim10G0162300 Rhododendron simsii HOM05D005240 ORTHO05D006471 1.0e-68 264.2 261 54.0
Thhalv10017274m.g Eutrema salsugineum HOM05D005240 ORTHO05D006471 1.3e-68 263.8 178 69.7
Glyma.10G213900 Glycine max HOM05D005240 ORTHO05D006471 1.7e-68 263.5 181 68.5
A04p27280 Brassica napus HOM05D005240 ORTHO05D006471 2.9e-68 262.7 182 67.0
BraA04t18226Z Brassica rapa HOM05D005240 ORTHO05D006471 2.9e-68 262.7 182 67.0
BcaC02g07666 Brassica carinata HOM05D005240 ORTHO05D006471 3.9e-68 262.3 182 65.9
Ciclev10032844m.g Citrus clementina HOM05D005240 ORTHO05D006471 1.9e-67 260.0 160 74.4
DCAR_015276 Daucus carota HOM05D005240 ORTHO05D006471 3.3e-67 259.2 193 65.3
Ah.16g108220 Amaranthus hybridus HOM05D005240 ORTHO05D006471 7.3e-67 258.1 193 64.2
SalBow3G0637 Salvia bowleyana HOM05D005240 ORTHO05D006471 7.3e-67 258.1 165 72.1
Carub.0004s1759 Capsella rubella HOM05D005240 ORTHO05D006471 1.2e-66 257.3 183 67.8
Glyma.10G214000 Glycine max HOM05D005240 ORTHO05D006471 1.6e-66 256.9 181 69.1
Zm00001eb148920 Zea mays HOM05D005240 ORTHO05D006471 2.8e-66 256.1 182 67.0
COL.COLO4_23732 Corchorus olitorius HOM05D005240 ORTHO05D006471 3.6e-66 255.8 167 73.1
CDE07G1884 Ceratophyllum demersum HOM05D005240 ORTHO05D006471 4.7e-66 255.4 193 64.8
AT2G35820 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 6.1e-66 255.0 191 64.4
AUR62020787 Chenopodium quinoa HOM05D005240 ORTHO05D006471 1.0e-65 254.2 193 64.2
C04p64800 Brassica napus HOM05D005240 ORTHO05D006471 1.8e-65 253.4 182 63.7
BolC4t27957H Brassica oleracea HOM05D005240 ORTHO05D006471 1.8e-65 253.4 182 63.7
Medtr1g095900 Medicago truncatula HOM05D005240 ORTHO05D006471 3.1e-65 252.7 184 66.3
AT2G35810 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 1.2e-64 250.8 196 62.8
AT2G35830 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 2.6e-64 249.6 182 65.4
CARHR130080 Cardamine hirsuta HOM05D005240 ORTHO05D006471 3.4e-64 249.2 178 65.7
MBI16_g46203_MAGBIO Magnolia biondii HOM05D005240 ORTHO05D006471 2.9e-63 246.1 202 60.4
AL4G31930 Arabidopsis lyrata HOM05D005240 ORTHO05D006471 3.7e-63 245.7 179 64.2
CANSAT56G2007 Cannabis sativa HOM05D005240 ORTHO05D006471 6.4e-63 245.0 215 57.2
ATR1159G086 Amborella trichopoda HOM05D005240 ORTHO05D006471 1.9e-62 243.4 196 57.7
CANSAT56G3849 Cannabis sativa HOM05D005240 ORTHO05D006471 1.9e-62 243.4 197 59.4
DCAR_019135 Daucus carota HOM05D005240 ORTHO05D006471 4.1e-62 242.3 205 61.0
HPP92_007585 Vanilla planifolia HOM05D005240 ORTHO05D006471 5.4e-62 241.9 176 60.2
PSO170G1537 Papaver somniferum HOM05D005240 ORTHO05D006471 2.7e-61 239.6 179 65.4
AUR62043640 Chenopodium quinoa HOM05D005240 ORTHO05D006471 1.0e-60 237.7 175 65.7
AagrBONN_evm.TU.Sc2ySwM_117.2297 Anthoceros agrestis HOM05D005240 ORTHO05D006471 1.3e-60 237.3 181 62.4
MELO3C023691.2 Cucumis melo HOM05D005240 ORTHO05D006471 5.0e-60 235.3 196 57.7
Os01g0833200 Oryza sativa ssp. japonica HOM05D005240 ORTHO05D006471 7.3e-59 231.5 182 63.2
PSO210G3376 Papaver somniferum HOM05D005240 ORTHO05D006471 1.2e-58 230.7 181 60.8
BcaB06g28875 Brassica carinata HOM05D005240 ORTHO05D006471 1.8e-57 226.9 162 65.4
CsaV3_7G024930 Cucumis sativus L. HOM05D005240 ORTHO05D006471 6.8e-57 224.9 194 56.7
Sed0009768 Sechium edule HOM05D005240 ORTHO05D006471 1.5e-56 223.8 184 59.8
Pp3c27_2400 Physcomitrium patens HOM05D005240 ORTHO05D006471 4.4e-56 222.2 201 53.7
Mapoly0113s0026 Marchantia polymorpha HOM05D005240 ORTHO05D006471 1.3e-55 220.7 219 51.1
Sc09g0006770 Simmondsia chinensis HOM05D005240 ORTHO05D006471 3.7e-55 219.2 149 69.1
Dinv31345 Davidia involucrata HOM05D005240 ORTHO05D006471 1.2e-53 214.2 136 73.5
Aa31LG7G14960 Aethionema arabicum HOM05D005240 ORTHO05D006471 4.6e-53 212.2 161 66.5
PSO210G2334 Papaver somniferum HOM05D005240 ORTHO05D006471 4.6e-53 212.2 161 63.4
Aa31LG7G14930 Aethionema arabicum HOM05D005240 ORTHO05D006471 5.1e-52 208.8 175 60.6
Sed0007370 Sechium edule HOM05D005240 ORTHO05D006471 9.5e-51 204.5 185 53.0
TPR.G10956 Trifolium pratense HOM05D005240 ORTHO05D006471 1.4e-49 200.7 132 69.7
CBR_g12600 Chara braunii HOM05D005240 ORTHO05D006471 1.8e-49 200.3 203 50.2
SMO147G0062 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 5.2e-49 198.7 168 56.5
Lj8C95T7 Lonicera japonica HOM05D005240 ORTHO05D006471 6.8e-49 198.4 135 71.9
SMO330G0010 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.2e-48 197.6 166 56.6
Haze_16935 Corylus avellana HOM05D005240 ORTHO05D006471 2.6e-48 196.4 175 57.7
Oeu057235.1 Olea europaea HOM05D005240 ORTHO05D006471 5.8e-48 195.3 112 78.6
SMO330G0030 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 5.8e-48 195.3 168 56.5
TPR.G15475 Trifolium pratense HOM05D005240 ORTHO05D006471 4.1e-46 189.1 133 62.4
SMO330G0038 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.2e-45 187.6 152 59.9
SMO147G0059 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 4.6e-45 185.7 163 54.6
SMO257G0002 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.2e-40 171.0 136 58.8
ClCG09G009820 Citrullus lanatus HOM05D005240 ORTHO05D006471 2.7e-37 159.8 181 47.0
MCO11G764 Micromonas commoda HOM05D005240 ORTHO05D006471 2.7e-37 159.8 195 45.1
SMO330G0050 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 4.6e-37 159.1 125 60.8
arahy.Tifrunner.gnm1.ann1.ZWA97R Arachis hypogaea HOM05D005240 ORTHO05D006471 7.8e-37 158.3 119 64.7
SMO330G0006 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.3e-36 157.5 167 47.9
CARHR130090 Cardamine hirsuta HOM05D005240 ORTHO05D006471 2.5e-35 153.3 113 60.2
arahy.Tifrunner.gnm1.ann1.65Y6VJ Arachis hypogaea HOM05D005240 ORTHO05D006471 3.3e-35 152.9 180 47.2
unitig_0.g188 Utricularia gibba HOM05D005240 ORTHO05D006471 1.3e-34 151.0 99 69.7
Cre08.g378650 Chlamydomonas reinhardtii HOM05D005240 ORTHO05D006471 3.1e-33 146.4 192 41.7
Nitab4.5_0011688g0030 Nicotiana tabacum HOM05D005240 ORTHO05D006471 4.6e-29 132.5 117 59.0
FAN01G3056 Fragaria x ananassa HOM05D005240 ORTHO05D006471 9.6e-27 124.8 90 64.4
PRCOL_00006731 Prasinoderma coloniale HOM05D005240 ORTHO05D006471 5.3e-25 119.0 199 34.7
SMO147G0342 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 4.9e-23 112.5 89 55.1
Lj8C95T8 Lonicera japonica HOM05D005240 ORTHO05D006471 7.1e-14 82.0 57 73.7
CAN.G1302.2 Capsicum annuum HOM05D005240 ORTHO05D115732 3.0e-12 76.6 107 43.0
Cpa.g.sc53.24 Carica papaya HOM05D005240 ORTHO05D006471 2.5e-11 73.6 49 71.4
SMO330G0037 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 4.3e-11 72.8 53 60.4
TPR.G38077 Trifolium pratense HOM05D005240 ORTHO05D006471 1.1e-09 68.2 47 68.1
TPR.G970 Trifolium pratense HOM05D005240 ORTHO05D006471 1.1e-09 68.2 64 53.1
Os01g0833150 Oryza sativa ssp. japonica HOM05D005240 ORTHO05D006471 1.4e-09 67.8 45 68.9
SEGI_21412 Sequoiadendron giganteum HOM05D005240 ORTHO05D006471 2.5e-06 57.0 50 58.0


User provided reference genes

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