Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen10g001670 Solanum pennellii HOM05D005664 ORTHO05D006509 0.0e+00 1434.9 728 100.0
Solyc10g005700.3 Solanum lycopersicum HOM05D005664 ORTHO05D006509 0.0e+00 1403.7 728 97.7
PGSC0003DMG400011270 Solanum tuberosum HOM05D005664 ORTHO05D006509 0.0e+00 1346.3 729 94.0
CAN.G492.59 Capsicum annuum HOM05D005664 ORTHO05D006509 0.0e+00 1184.5 728 84.3
Nitab4.5_0000611g0180 Nicotiana tabacum HOM05D005664 ORTHO05D006509 1.3e-299 1032.7 717 78.2
Nitab4.5_0001622g0140 Nicotiana tabacum HOM05D005664 ORTHO05D006509 1.1e-290 1003.0 707 76.9
Peaxi162Scf00006g00092 Petunia axillaris HOM05D005664 ORTHO05D006509 1.1e-195 687.6 738 56.6
PGSC0003DMG400002313 Solanum tuberosum HOM05D005664 ORTHO05D006509 6.9e-195 684.9 745 54.1
CAN.G8.46 Capsicum annuum HOM05D005664 ORTHO05D006509 9.3e-192 674.5 750 53.6
Sopen12g008050 Solanum pennellii HOM05D005664 ORTHO05D006509 1.5e-186 657.1 754 52.4
Solyc12g017230.2 Solanum lycopersicum HOM05D005664 ORTHO05D006509 4.2e-184 649.0 754 52.1
Dinv40921 Davidia involucrata HOM05D005664 ORTHO05D006509 1.6e-146 524.2 736 46.5
vmacro11645 Vaccinium macrocarpon HOM05D005664 ORTHO05D006509 7.7e-146 521.9 785 44.6
Dinv19639 Davidia involucrata HOM05D005664 ORTHO05D006509 1.1e-144 518.1 730 46.6
Cc05_g15770 Coffea canephora HOM05D005664 ORTHO05D006509 1.5e-144 517.7 748 45.9
Oeu052022.1 Olea europaea HOM05D005664 ORTHO05D006509 8.5e-137 491.9 738 44.4
Actinidia30345 Actinidia chinensis HOM05D005664 ORTHO05D006509 9.4e-136 488.4 756 43.4
Rhsim06G0235600 Rhododendron simsii HOM05D005664 ORTHO05D006509 1.8e-134 484.2 751 43.8
Hma1.2p1_0193F.1_g084390 Hydrangea macrophylla HOM05D005664 ORTHO05D006509 4.0e-134 483.0 759 42.6
CSS0022030 Camellia sinensis var. sinensis HOM05D005664 ORTHO05D006509 1.2e-133 481.5 800 42.0
CSS0015837 Camellia sinensis var. sinensis HOM05D005664 ORTHO05D006509 2.8e-132 476.9 747 44.2
Oeu015275.1 Olea europaea HOM05D005664 ORTHO05D006509 2.8e-132 476.9 739 44.1
TAR627G1206 Trochodendron aralioides HOM05D005664 ORTHO05D006509 9.1e-131 471.9 757 43.6
QL08p000429 Quercus lobata HOM05D005664 ORTHO05D006509 2.8e-127 460.3 768 42.4
MSTRG.16129 Avicennia marina HOM05D005664 ORTHO05D006509 4.9e-124 449.5 750 41.1
SalBow8G4453 Salvia bowleyana HOM05D005664 ORTHO05D006509 4.3e-120 436.4 705 41.1
Atru.chr2.3903 Acer truncatum HOM05D005664 ORTHO05D006509 2.8e-119 433.7 747 41.4
Ciclev10007600m.g Citrus clementina HOM05D005664 ORTHO05D006509 8.0e-119 432.2 746 41.4
TAR629G3046 Trochodendron aralioides HOM05D005664 ORTHO05D006509 1.8e-115 421.0 736 41.2
Haze_09920 Corylus avellana HOM05D005664 ORTHO05D006509 6.6e-113 412.5 767 39.9
Manes.01G007400 Manihot esculenta HOM05D005664 ORTHO05D006509 1.4e-110 404.8 750 40.7
Potri.001G472600 Populus trichocarpa HOM05D005664 ORTHO05D006509 1.4e-110 404.8 755 40.9
Cfa016966 Carpinus fangiana HOM05D005664 ORTHO05D006509 8.9e-110 402.1 742 40.8
DCAR_016806 Daucus carota HOM05D005664 ORTHO05D006509 2.6e-109 400.6 739 41.3
Manes.01G007300 Manihot esculenta HOM05D005664 ORTHO05D006509 3.7e-108 396.7 758 40.9
CiPaw.12G143100 Carya illinoinensis HOM05D005664 ORTHO05D006509 1.4e-107 394.8 747 39.9
Nn1g09430 Nelumbo nucifera HOM05D005664 ORTHO05D006509 1.6e-106 391.3 882 35.6
Thecc.07G000900 Theobroma cacao HOM05D005664 ORTHO05D006509 1.6e-106 391.3 772 39.4
Migut.M01578 Erythranthe guttata HOM05D005664 ORTHO05D006509 8.1e-103 379.0 734 38.0
MD11G1047100 Malus domestica HOM05D005664 ORTHO05D006509 1.1e-102 378.6 769 38.2
Potri.011G169200 Populus trichocarpa HOM05D005664 ORTHO05D006509 1.8e-102 377.9 756 40.1
Prupe.6G035900 Prunus persica HOM05D005664 ORTHO05D006509 6.8e-102 375.9 772 38.0
MD03G1043600 Malus domestica HOM05D005664 ORTHO05D006509 2.0e-101 374.4 769 38.5
Sabra11G0137600 Salix brachista HOM05D005664 ORTHO05D006509 2.6e-101 374.0 757 39.9
Nn7g37452 Nelumbo nucifera HOM05D005664 ORTHO05D006509 9.9e-101 372.1 920 34.6
Sabra16G0320800 Salix brachista HOM05D005664 ORTHO05D006509 6.4e-100 369.4 756 38.6
Duzib268G0032 Durio zibethinus HOM05D005664 ORTHO05D006509 2.4e-99 367.5 770 38.3
Duzib170G1037 Durio zibethinus HOM05D005664 ORTHO05D006509 2.1e-98 364.4 780 37.6
CSS0025023 Camellia sinensis var. sinensis HOM05D005664 ORTHO05D006509 1.0e-97 362.1 712 37.8
Cpa.g.sc12.60 Carica papaya HOM05D005664 ORTHO05D006509 3.9e-97 360.1 822 36.5
ClCG09G021770 Citrullus lanatus HOM05D005664 ORTHO05D006509 1.6e-95 354.8 756 37.0
SGA_v2.0_scaffold186G40232 Striga asiatica HOM05D005664 ORTHO05D006509 6.2e-95 352.8 751 35.4
unitig_37.g12212 Utricularia gibba HOM05D005664 ORTHO05D006509 6.8e-94 349.4 758 36.0
Oeu062669.1 Olea europaea HOM05D005664 ORTHO05D006509 1.5e-93 348.2 724 38.8
MELO3C013227.2 Cucumis melo HOM05D005664 ORTHO05D006509 2.6e-93 347.4 755 36.6
CsaV3_7G021290 Cucumis sativus L. HOM05D005664 ORTHO05D006509 2.4e-91 340.9 756 36.5
TWI39G0285 Tripterygium wilfordii HOM05D005664 ORTHO05D006509 3.2e-91 340.5 776 36.3
Gorai.013G147600 Gossypium raimondii HOM05D005664 ORTHO05D006509 4.1e-91 340.1 769 37.5
Eucgr.F01983 Eucalyptus grandis HOM05D005664 ORTHO05D006509 9.2e-91 339.0 783 35.2
Gohir.D13G131600 Gossypium hirsutum HOM05D005664 ORTHO05D006509 1.6e-90 338.2 769 36.9
MBI14_g10255_MAGBIO Magnolia biondii HOM05D005664 ORTHO05D006509 2.5e-88 330.9 757 34.6
Hma1.2p1_0321F.1_g124370 Hydrangea macrophylla HOM05D005664 ORTHO05D006509 4.7e-87 326.6 723 36.4
COL.COLO4_30921 Corchorus olitorius HOM05D005664 ORTHO05D006509 1.1e-86 325.5 731 36.9
Sed0014853 Sechium edule HOM05D005664 ORTHO05D006509 4.0e-86 323.6 740 36.5
FvH4_3g41520 Fragaria vesca HOM05D005664 ORTHO05D006509 1.9e-83 314.7 763 36.4
Gohir.A13G128200 Gossypium hirsutum HOM05D005664 ORTHO05D006509 7.1e-83 312.8 752 36.7
arahy.Tifrunner.gnm1.ann1.C46LV5 Arachis hypogaea HOM05D005664 ORTHO05D006509 8.7e-81 305.8 693 36.8
FAN11G0133 Fragaria x ananassa HOM05D005664 ORTHO05D006509 9.6e-80 302.4 768 35.8
FAN16G2562 Fragaria x ananassa HOM05D005664 ORTHO05D006509 4.8e-79 300.1 766 35.6
FAN25G3031 Fragaria x ananassa HOM05D005664 ORTHO05D006509 2.4e-78 297.7 761 35.1
Aqoxy1G04294 Aquilegia oxysepala HOM05D005664 ORTHO05D006509 4.5e-77 293.5 765 33.2
arahy.Tifrunner.gnm1.ann1.GFW533 Arachis hypogaea HOM05D005664 ORTHO05D006509 5.4e-75 286.6 678 36.0
Sed0021044 Sechium edule HOM05D005664 ORTHO05D006509 5.4e-75 286.6 723 33.9
RcHm_v2.0_Chr5g0074471 Rosa chinensis HOM05D005664 ORTHO05D006509 6.0e-74 283.1 761 34.8
Lj3g0022247 Lotus japonicus HOM05D005664 ORTHO05D006509 1.3e-73 282.0 762 34.5
FAN21G3314 Fragaria x ananassa HOM05D005664 ORTHO05D006509 1.9e-72 278.1 748 35.3
Glyma.04G114300 Glycine max HOM05D005664 ORTHO05D006509 3.3e-72 277.3 742 34.9
PSO063G4895 Papaver somniferum HOM05D005664 ORTHO05D006509 1.3e-71 275.4 749 33.2
PSO782G2174 Papaver somniferum HOM05D005664 ORTHO05D006509 1.4e-70 271.9 749 33.4
Lsat_1_v5_gn_7_115861 Lactuca sativa HOM05D005664 ORTHO05D006509 3.4e-69 267.3 731 33.1
Lalb_Chr15g0079911 Lupinus albus HOM05D005664 ORTHO05D006509 3.4e-69 267.3 698 33.4
Phvul.005G005100 Phaseolus vulgaris HOM05D005664 ORTHO05D006509 3.8e-68 263.8 741 32.9
TPR.G16700 Trifolium pratense HOM05D005664 ORTHO05D006509 3.8e-68 263.8 815 31.8
Glyma.06G321000 Glycine max HOM05D005664 ORTHO05D006509 1.1e-67 262.3 727 33.3
Psat5g231360 Pisum sativum HOM05D005664 ORTHO05D006509 1.1e-67 262.3 829 31.8
HanXRQChr17g0546881 Helianthus annuus HOM05D005664 ORTHO05D006509 3.2e-67 260.8 746 33.4
Ca_14130_v3 Cicer arietinum L. HOM05D005664 ORTHO05D006509 6.0e-66 256.5 704 33.0
Lalb_Chr18g0048701 Lupinus albus HOM05D005664 ORTHO05D006509 1.3e-65 255.4 773 33.0
Medtr3g009540 Medicago truncatula HOM05D005664 ORTHO05D006509 1.5e-64 251.9 751 33.3
VMungo1080G0452 Vigna mungo HOM05D005664 ORTHO05D006509 4.8e-63 246.9 751 32.1
THA.LOC104813465 Tarenaya hassleriana HOM05D005664 ORTHO05D006509 1.1e-62 245.7 768 32.4
THA.LOC104813471 Tarenaya hassleriana HOM05D005664 ORTHO05D006509 1.4e-62 245.4 779 32.6
AUR62015929 Chenopodium quinoa HOM05D005664 ORTHO05D006509 2.4e-62 244.6 700 32.9
AUR62040680 Chenopodium quinoa HOM05D005664 ORTHO05D006509 2.2e-60 238.0 699 32.3
Hund01929 Selenicereus undatus HOM05D005664 ORTHO05D006509 7.1e-59 233.0 705 30.8
Hund01927 Selenicereus undatus HOM05D005664 ORTHO05D006509 3.0e-57 227.6 685 32.0
CDE11G0421 Ceratophyllum demersum HOM05D005664 ORTHO05D006509 2.5e-56 224.6 781 30.7
EL10Ac4g07635 Beta vulgaris HOM05D005664 ORTHO05D006509 3.3e-56 224.2 696 31.5
Sc03g0011800 Simmondsia chinensis HOM05D005664 ORTHO05D006509 1.8e-54 218.4 750 30.1
Lj1A901T36 Lonicera japonica HOM05D005664 ORTHO05D006509 9.0e-54 216.1 284 49.3
Carub.0007s1448 Capsella rubella HOM05D005664 ORTHO05D006509 5.9e-53 213.4 786 31.0
Ah.04g166380 Amaranthus hybridus HOM05D005664 ORTHO05D006509 6.5e-52 209.9 689 31.9
AL7G26500 Arabidopsis lyrata HOM05D005664 ORTHO05D006509 1.1e-51 209.1 779 29.4
unitig_46.g18526 Utricularia gibba HOM05D005664 ORTHO05D006509 4.6e-50 203.8 650 30.9
Migut.H01706 Erythranthe guttata HOM05D005664 ORTHO05D006509 7.9e-50 203.0 756 29.8
MSTRG.13052 Avicennia marina HOM05D005664 ORTHO05D006509 1.0e-49 202.6 556 34.2
AT4G26450 Arabidopsis thaliana HOM05D005664 ORTHO05D006509 1.1e-48 199.1 779 29.9
GSVIVG01014850001 Vitis vinifera HOM05D005664 ORTHO05D006509 2.0e-48 198.4 176 58.5
ECA236G2587 Erigeron canadensis HOM05D005664 ORTHO05D006509 4.3e-48 197.2 749 30.0
CDE05G2921 Ceratophyllum demersum HOM05D005664 ORTHO05D006509 1.7e-47 195.3 770 29.6
Sp7g24360 Schrenkiella parvula HOM05D005664 ORTHO05D006509 3.7e-47 194.1 775 29.0
Aa31LG5G11790 Aethionema arabicum HOM05D005664 ORTHO05D006509 6.3e-47 193.4 761 29.0
Ah.06g181030 Amaranthus hybridus HOM05D000037 ORTHO05D006509 1.0e-44 186.0 695 28.2
CANSAT11G1251 Cannabis sativa HOM05D005664 ORTHO05D006509 1.7e-44 185.3 720 31.2
CARHR234010 Cardamine hirsuta HOM05D005664 ORTHO05D006509 8.5e-44 183.0 788 28.2
Thhalv10024531m.g Eutrema salsugineum HOM05D005664 ORTHO05D006509 1.1e-43 182.6 793 29.3
C01p22360 Brassica napus HOM05D005664 ORTHO05D006509 2.6e-40 171.4 755 29.7
BcaC09g50709 Brassica carinata HOM05D005664 ORTHO05D006509 5.7e-40 170.2 756 30.0
A03p56710 Brassica napus HOM05D005664 ORTHO05D006509 7.4e-40 169.9 787 28.8
BraA03t14741Z Brassica rapa HOM05D005664 ORTHO05D006509 7.4e-40 169.9 787 28.8
BcaC06g32747 Brassica carinata HOM05D005664 ORTHO05D006509 7.0e-38 163.3 795 28.2
Lj1A901G38 Lonicera japonica HOM05D005664 ORTHO05D006509 7.0e-38 163.3 129 62.8
A01p17690 Brassica napus HOM05D005664 ORTHO05D006509 4.5e-37 160.6 776 29.5
BraA01t01725Z Brassica rapa HOM05D005664 ORTHO05D006509 5.9e-37 160.2 775 29.4
BolC1t02167H Brassica oleracea HOM05D005664 ORTHO05D006509 1.7e-36 158.7 761 29.7
C07p54910 Brassica napus HOM05D005664 ORTHO05D006509 2.3e-33 148.3 789 28.0
BolC7t45979H Brassica oleracea HOM05D005664 ORTHO05D006509 2.3e-33 148.3 789 28.0
HPP92_019365 Vanilla planifolia HOM05D005664 ORTHO05D006509 2.3e-25 121.7 765 26.7
ATR0021G035 Amborella trichopoda HOM05D005664 ORTHO05D006509 8.8e-25 119.8 837 27.0
Zm00001eb422560 Zea mays HOM05D019841 ORTHO05D006509 2.3e-17 95.1 767 24.6
MSTRG.7045 Avicennia marina HOM05D005664 ORTHO05D006509 6.8e-17 93.6 94 50.0
Os04g0431000 Oryza sativa ssp. japonica HOM05D019841 ORTHO05D006509 3.8e-12 77.8 243 28.8
Os02g0550000 Oryza sativa ssp. japonica HOM05D019841 ORTHO05D037008 1.0e-09 69.7 781 21.8
Psat6g196680 Pisum sativum HOM05D005664 ORTHO05D006509 1.2e-08 66.2 114 38.6
Actinidia33104 Actinidia chinensis HOM05D005664 ORTHO05D006509 7.5e-08 63.5 47 68.1


User provided reference genes

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