Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen10g001360 Solanum pennellii HOM05D004835 ORTHO05D006046 1.9e-223 778.9 396 100.0
Solyc10g005370.3 Solanum lycopersicum HOM05D004835 ORTHO05D006046 8.0e-222 773.5 396 99.2
PGSC0003DMG400011280 Solanum tuberosum HOM05D004835 ORTHO05D006046 7.3e-199 697.2 400 91.8
CAN.G105.1 Capsicum annuum HOM05D004835 ORTHO05D006046 1.7e-179 632.9 407 82.1
Nitab4.5_0003738g0050 Nicotiana tabacum HOM05D004835 ORTHO05D006046 1.0e-176 623.6 400 81.5
Nitab4.5_0006795g0010 Nicotiana tabacum HOM05D004835 ORTHO05D006046 1.5e-175 619.8 400 81.0
Peaxi162Scf00678g00310 Petunia axillaris HOM05D004835 ORTHO05D006046 1.3e-147 526.9 398 73.6
Ciclev10015558m.g Citrus clementina HOM05D004835 ORTHO05D006046 3.8e-147 525.4 386 69.2
Oeu030985.2 Olea europaea HOM05D004835 ORTHO05D006046 4.9e-147 525.0 416 67.1
CiPaw.10G068200 Carya illinoinensis HOM05D004835 ORTHO05D006046 1.1e-146 523.9 402 69.4
QL05p075217 Quercus lobata HOM05D004835 ORTHO05D006046 2.7e-145 519.2 380 71.1
Manes.16G012700 Manihot esculenta HOM05D004835 ORTHO05D006046 1.8e-144 516.5 371 70.1
TAR626G1121 Trochodendron aralioides HOM05D004835 ORTHO05D006046 3.9e-144 515.4 396 67.4
PGR004G0955 Punica granatum HOM05D004835 ORTHO05D006046 6.7e-144 514.6 385 69.4
Sabra04G0012600 Salix brachista HOM05D004835 ORTHO05D006046 8.7e-144 514.2 388 69.8
Prupe.4G026400 Prunus persica HOM05D004835 ORTHO05D006046 1.1e-143 513.8 403 67.2
Thecc.06G213800 Theobroma cacao HOM05D004835 ORTHO05D006046 1.1e-143 513.8 364 71.4
COL.COLO4_31722 Corchorus olitorius HOM05D004835 ORTHO05D006046 1.9e-143 513.1 380 70.3
Hma1.2p1_0091F.1_g046150 Hydrangea macrophylla HOM05D004835 ORTHO05D006046 4.3e-143 511.9 360 72.5
Lj1A1224G37 Lonicera japonica HOM05D004835 ORTHO05D006046 1.3e-142 510.4 365 71.8
CsaV3_1G011070 Cucumis sativus L. HOM05D004835 ORTHO05D006046 1.6e-142 510.0 375 69.1
Potri.004G022900 Populus trichocarpa HOM05D004835 ORTHO05D006046 4.8e-142 508.4 401 67.8
Gorai.010G176900 Gossypium raimondii HOM05D004835 ORTHO05D006046 6.3e-142 508.1 381 68.5
Gohir.A06G145700 Gossypium hirsutum HOM05D004835 ORTHO05D006046 1.4e-141 506.9 381 68.5
MD05G1340900 Malus domestica HOM05D004835 ORTHO05D006046 1.4e-141 506.9 380 68.9
MELO3C002484.2 Cucumis melo HOM05D004835 ORTHO05D006046 1.8e-141 506.5 375 69.1
Atru.chr10.2145 Acer truncatum HOM05D004835 ORTHO05D006046 5.3e-141 505.0 379 68.9
CSS0008490 Camellia sinensis var. sinensis HOM05D004835 ORTHO05D006046 1.5e-140 503.4 367 70.3
Eucgr.D00815 Eucalyptus grandis HOM05D004835 ORTHO05D006046 3.4e-140 502.3 417 64.3
Actinidia26949 Actinidia chinensis HOM05D004835 ORTHO05D006046 4.5e-140 501.9 406 64.3
Nn1g07024 Nelumbo nucifera HOM05D004835 ORTHO05D006046 2.9e-139 499.2 378 67.7
ClCG03G004990 Citrullus lanatus HOM05D004835 ORTHO05D006046 5.0e-139 498.4 375 68.3
MSTRG.13160 Avicennia marina HOM05D004835 ORTHO05D006046 6.5e-139 498.0 395 65.1
RcHm_v2.0_Chr5g0004011 Rosa chinensis HOM05D004835 ORTHO05D006046 6.5e-139 498.0 378 68.3
TWI63G0472 Tripterygium wilfordii HOM05D004835 ORTHO05D006046 7.2e-138 494.6 370 70.0
CANSAT56G3094 Cannabis sativa HOM05D004835 ORTHO05D006046 1.6e-137 493.4 399 66.7
FAN25G1333 Fragaria x ananassa HOM05D004835 ORTHO05D006046 1.4e-136 490.3 368 67.1
MBI02_g10099_MAGBIO Magnolia biondii HOM05D004835 ORTHO05D006046 1.4e-136 490.3 372 68.3
vmacro03709 Vaccinium macrocarpon HOM05D004835 ORTHO05D006046 1.4e-136 490.3 409 64.3
Cfa000278 Carpinus fangiana HOM05D004835 ORTHO05D006046 3.0e-136 489.2 427 61.8
Cpa.g.sc198.3 Carica papaya HOM05D004835 ORTHO05D006046 6.7e-136 488.0 407 62.7
arahy.Tifrunner.gnm1.ann1.06HJR7 Arachis hypogaea HOM05D004835 ORTHO05D006046 8.8e-136 487.6 381 67.7
Haze_06737 Corylus avellana HOM05D004835 ORTHO05D006046 1.1e-135 487.3 426 61.3
ECA236G4143 Erigeron canadensis HOM05D004835 ORTHO05D006046 1.5e-135 486.9 407 64.1
FvH4_3g02680 Fragaria vesca HOM05D004835 ORTHO05D006046 1.5e-135 486.9 367 67.0
PSO675G0743 Papaver somniferum HOM05D004835 ORTHO05D006046 1.5e-135 486.9 375 68.5
arahy.Tifrunner.gnm1.ann1.P6UBAG Arachis hypogaea HOM05D004835 ORTHO05D006046 2.0e-135 486.5 377 67.4
Rhsim13G0157800 Rhododendron simsii HOM05D004835 ORTHO05D006046 2.0e-135 486.5 408 63.5
Lalb_Chr02g0144591 Lupinus albus HOM05D004835 ORTHO05D006046 7.4e-135 484.6 364 68.4
HanXRQChr05g0130051 Helianthus annuus HOM05D004835 ORTHO05D006046 1.3e-134 483.8 387 65.9
Glyma.20G141100 Glycine max HOM05D004835 ORTHO05D006046 1.7e-134 483.4 365 67.9
Glyma.10G252300 Glycine max HOM05D004835 ORTHO05D006046 2.2e-134 483.0 365 68.5
Hund21377 Selenicereus undatus HOM05D004835 ORTHO05D006046 2.2e-134 483.0 362 69.1
DCAR_008123 Daucus carota HOM05D004835 ORTHO05D006046 2.8e-134 482.6 401 65.3
Migut.H01551 Erythranthe guttata HOM05D004835 ORTHO05D006046 6.3e-134 481.5 423 64.1
Lj5g0006944 Lotus japonicus HOM05D004835 ORTHO05D006046 6.3e-134 481.5 359 67.4
Haze_06733 Corylus avellana HOM05D004835 ORTHO05D006046 8.2e-134 481.1 385 64.9
Gohir.D06G151600 Gossypium hirsutum HOM05D004835 ORTHO05D006046 8.2e-134 481.1 381 66.1
Lsat_1_v5_gn_7_16981 Lactuca sativa HOM05D004835 ORTHO05D006046 1.4e-133 480.3 410 64.4
Aqoxy4G01996 Aquilegia oxysepala HOM05D004835 ORTHO05D006046 1.8e-133 479.9 369 67.2
Ca_10985_v3 Cicer arietinum L. HOM05D004835 ORTHO05D006046 3.1e-133 479.2 370 66.2
Ca_11005_v3 Cicer arietinum L. HOM05D004835 ORTHO05D006046 3.1e-133 479.2 370 66.2
SalBow1G4699 Salvia bowleyana HOM05D004835 ORTHO05D006046 1.5e-132 476.9 341 71.3
Sed0001374 Sechium edule HOM05D004835 ORTHO05D006046 2.6e-132 476.1 431 60.6
Cc00_g17920 Coffea canephora HOM05D004835 ORTHO05D006046 3.4e-132 475.7 288 80.2
ATR0762G046 Amborella trichopoda HOM05D004835 ORTHO05D006046 5.9e-132 474.9 361 65.7
Psat6g210360 Pisum sativum HOM05D004835 ORTHO05D006046 1.0e-131 474.2 371 65.8
unitig_749.g13624 Utricularia gibba HOM05D004835 ORTHO05D006046 1.0e-131 474.2 367 65.9
Medtr1g105545 Medicago truncatula HOM05D004835 ORTHO05D006046 1.3e-131 473.8 371 66.3
SGA_v2.0_scaffold49G18268 Striga asiatica HOM05D004835 ORTHO05D006046 1.3e-131 473.8 293 77.1
Phvul.007G051900 Phaseolus vulgaris HOM05D004835 ORTHO05D006046 2.2e-131 473.0 384 65.4
VMungo0720G3178 Vigna mungo HOM05D004835 ORTHO05D006046 3.8e-131 472.2 385 64.4
Dinv17835 Davidia involucrata HOM05D004835 ORTHO05D006046 8.5e-131 471.1 288 79.9
GSVIVG01012626001 Vitis vinifera HOM05D004835 ORTHO05D006046 3.2e-130 469.2 288 79.2
Duzib235G1297 Durio zibethinus HOM05D004835 ORTHO05D006046 1.6e-129 466.8 374 65.2
EL10Ac8g19899 Beta vulgaris HOM05D004835 ORTHO05D006046 3.6e-129 465.7 379 65.4
AUR62022016 Chenopodium quinoa HOM05D004835 ORTHO05D006046 1.4e-128 463.8 366 66.7
unitig_26.g9396 Utricularia gibba HOM05D004835 ORTHO05D006046 1.4e-128 463.8 394 62.4
CDE05G0674 Ceratophyllum demersum HOM05D004835 ORTHO05D006046 6.7e-128 461.5 375 63.5
MSTRG.14649 Avicennia marina HOM05D004835 ORTHO05D006046 8.8e-128 461.1 393 60.6
PSO541G2305 Papaver somniferum HOM05D004835 ORTHO05D006046 1.1e-127 460.7 375 66.4
THA.LOC104812524 Tarenaya hassleriana HOM05D004835 ORTHO05D006046 1.7e-126 456.8 376 62.2
HPP92_010092 Vanilla planifolia HOM05D004835 ORTHO05D006046 2.2e-126 456.4 393 60.6
Ah.09g235350 Amaranthus hybridus HOM05D004835 ORTHO05D006046 2.4e-125 453.0 372 62.4
AL7G32900 Arabidopsis lyrata HOM05D004835 ORTHO05D006046 2.2e-123 446.4 403 60.0
AT4G21210 Arabidopsis thaliana HOM05D004835 ORTHO05D006046 2.2e-123 446.4 392 61.5
Os07g0530600 Oryza sativa ssp. japonica HOM05D004835 ORTHO05D006046 4.2e-122 442.2 366 62.3
THA.LOC104821035 Tarenaya hassleriana HOM05D004835 ORTHO05D006046 4.2e-122 442.2 392 61.0
Sp7g19300 Schrenkiella parvula HOM05D004835 ORTHO05D006046 5.5e-122 441.8 389 60.2
C01p15150 Brassica napus HOM05D004835 ORTHO05D006046 3.6e-121 439.1 366 62.8
Thhalv10025354m.g Eutrema salsugineum HOM05D004835 ORTHO05D006046 3.6e-121 439.1 392 59.4
Carub.0007s2021 Capsella rubella HOM05D004835 ORTHO05D006046 4.7e-121 438.7 393 59.8
BolC1t01464H Brassica oleracea HOM05D004835 ORTHO05D006046 1.0e-120 437.6 385 60.5
Zm00001eb106240 Zea mays HOM05D004835 ORTHO05D006046 1.0e-120 437.6 395 58.5
Zm00001eb323140 Zea mays HOM05D004835 ORTHO05D006046 2.3e-120 436.4 385 58.4
Sc05g0008870 Simmondsia chinensis HOM05D004835 ORTHO05D006046 3.9e-120 435.6 371 62.3
BcaNung03833 Brassica carinata HOM05D004835 ORTHO05D006046 6.7e-120 434.9 411 58.6
A01p12580 Brassica napus HOM05D004835 ORTHO05D006046 1.1e-119 434.1 386 60.6
BcaC09g51244 Brassica carinata HOM05D004835 ORTHO05D006046 2.0e-119 433.3 385 60.3
CARHR227800 Cardamine hirsuta HOM05D004835 ORTHO05D006046 3.3e-119 432.6 393 59.5
ECA248G0073 Erigeron canadensis HOM05D004835 ORTHO05D006046 9.7e-119 431.0 364 63.7
BraA01t01201Z Brassica rapa HOM05D004835 ORTHO05D006046 1.3e-118 430.6 385 60.5
Aa31LG6G3230 Aethionema arabicum HOM05D004835 ORTHO05D006046 2.4e-117 426.4 395 58.2
Lsat_1_v5_gn_1_125320 Lactuca sativa HOM05D004835 ORTHO05D006046 5.3e-117 425.2 368 63.9
Cpa.g.sc198.4 Carica papaya HOM05D004835 ORTHO05D006046 2.6e-116 422.9 288 73.6
Nn1g03640 Nelumbo nucifera HOM05D004835 ORTHO05D006046 5.9e-116 421.8 358 62.0
HanXRQChr01g0002521 Helianthus annuus HOM05D004835 ORTHO05D006046 5.0e-115 418.7 378 59.5
Carub.0003s0094 Capsella rubella HOM05D004835 ORTHO05D006046 1.1e-114 417.5 387 59.7
Sp3g00900 Schrenkiella parvula HOM05D004835 ORTHO05D006046 8.0e-113 411.4 382 58.4
CARHR075840 Cardamine hirsuta HOM05D004835 ORTHO05D006046 1.0e-112 411.0 354 61.9
AL3G11040 Arabidopsis lyrata HOM05D004835 ORTHO05D006046 1.8e-112 410.2 391 57.8
AT3G01200 Arabidopsis thaliana HOM05D004835 ORTHO05D006046 1.8e-112 410.2 384 58.6
Hund23515 Selenicereus undatus HOM05D004835 ORTHO05D006046 4.0e-112 409.1 357 62.2
HPP92_010083 Vanilla planifolia HOM05D004835 ORTHO05D006046 1.5e-111 407.1 510 46.7
Pp3c11_19190 Physcomitrium patens HOM05D004835 ORTHO05D006046 2.0e-111 406.8 369 56.4
Thhalv10020923m.g Eutrema salsugineum HOM05D004835 ORTHO05D006046 1.7e-110 403.7 385 58.4
BraA01t04644Z Brassica rapa HOM05D004835 ORTHO05D006046 6.3e-110 401.7 389 57.6
Mapoly0141s0024 Marchantia polymorpha HOM05D004835 ORTHO05D006046 6.3e-110 401.7 388 56.4
BNapus_Darmor_BZH_scaffold_113p00010 Brassica napus HOM05D004835 ORTHO05D006046 1.1e-109 401.0 389 57.3
Lj2A274G58 Lonicera japonica HOM05D004835 ORTHO05D006046 1.1e-109 401.0 374 59.9
BNapus_Darmor_BZH_scaffold_97p00190 Brassica napus HOM05D004835 ORTHO05D006046 4.1e-109 399.1 389 57.1
BolC1t05939H Brassica oleracea HOM05D004835 ORTHO05D006046 1.2e-108 397.5 361 59.3
BcaC05g30485 Brassica carinata HOM05D004835 ORTHO05D006046 2.7e-108 396.4 380 57.4
C09p75340 Brassica napus HOM05D004835 ORTHO05D006046 5.9e-108 395.2 384 57.0
BolC5t35125H Brassica oleracea HOM05D004835 ORTHO05D006046 5.9e-108 395.2 384 57.0
BcaB04g21426 Brassica carinata HOM05D004835 ORTHO05D006046 7.7e-108 394.8 389 56.8
A05p44760 Brassica napus HOM05D004835 ORTHO05D006046 1.7e-107 393.7 383 56.7
BraA05t23181Z Brassica rapa HOM05D004835 ORTHO05D006046 1.7e-107 393.7 383 56.7
BcaC09g47670 Brassica carinata HOM05D004835 ORTHO05D006046 2.2e-107 393.3 345 60.3
BcaC05g30395 Brassica carinata HOM05D004835 ORTHO05D006046 1.1e-106 391.0 384 56.5
SMO147G0180 Selaginella moellendorffii HOM05D004835 ORTHO05D006046 8.0e-105 384.8 291 61.2
SEGI_26962 Sequoiadendron giganteum HOM05D004835 ORTHO05D006046 8.0e-105 384.8 348 56.0
FAN21G1397 Fragaria x ananassa HOM05D004835 ORTHO05D006046 6.8e-104 381.7 288 67.7
CSS0001434 Camellia sinensis var. sinensis HOM05D004835 ORTHO05D006046 1.5e-98 364.0 285 67.4
TPR.G5518 Trifolium pratense HOM05D004835 ORTHO05D006046 5.5e-98 362.1 374 54.0
CBR_g38977 Chara braunii HOM05D004835 ORTHO05D006046 7.5e-95 351.7 428 50.0
AagrBONN_evm.TU.Sc2ySwM_368.2632 Anthoceros agrestis HOM05D004835 ORTHO05D006046 1.7e-91 340.5 361 52.1
Aa31LG5G12420 Aethionema arabicum HOM05D004835 ORTHO05D006046 4.0e-88 329.3 252 67.1
Dinv20014 Davidia involucrata HOM05D004835 ORTHO05D006046 1.2e-71 274.6 191 71.7
Cre12.g514600 Chlamydomonas reinhardtii HOM05D004835 ORTHO05D006046 1.5e-58 231.1 295 41.4
BolC1t05935H Brassica oleracea HOM05D004835 ORTHO05D006046 4.9e-54 216.1 172 64.0
BNapus_Darmor_BZH_scaffold_97p00140 Brassica napus HOM05D004835 ORTHO05D006046 1.6e-52 211.1 161 65.8
MCO14G521 Micromonas commoda HOM05D004835 ORTHO05D006046 1.6e-52 211.1 293 41.3
TPR.G4570 Trifolium pratense HOM05D004835 ORTHO05D006046 2.0e-47 194.1 259 43.6
MD10G1314400 Malus domestica HOM05D004835 ORTHO05D006046 9.0e-40 168.7 249 42.2
BolC1t05929H Brassica oleracea HOM05D004835 ORTHO05D006046 4.2e-29 133.3 190 43.2
Dinv20013 Davidia involucrata HOM05D004835 ORTHO05D006046 1.5e-26 124.8 72 76.4
CANSAT64G1413 Cannabis sativa HOM05D004835 ORTHO05D006046 5.3e-24 116.3 177 44.1
Actinidia05534 Actinidia chinensis HOM05D000018 ORTHO05D001766 6.9e-24 115.9 102 57.8
Ca_29404_v3 Cicer arietinum L. HOM05D004835 ORTHO05D148401 1.8e-19 101.3 280 29.3
Aa31LG5G12410 Aethionema arabicum HOM05D004835 ORTHO05D038187 1.4e-16 91.7 145 44.8
BolC5t35131H Brassica oleracea HOM05D004835 ORTHO05D038187 2.9e-14 84.0 56 69.6
QL10p027838 Quercus lobata HOM05D004835 ORTHO05D337120 1.2e-12 78.6 127 41.7


User provided reference genes

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