Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g036400 Solanum pennellii HOM05D002704 ORTHO05D002891 3.1e-75 285.0 143 100.0
PGSC0003DMG400021617 Solanum tuberosum HOM05D002704 ORTHO05D002891 3.6e-63 245.0 147 86.4
Solyc09g098490.4 Solanum lycopersicum HOM05D001811 ORTHO05D001738 6.5e-57 224.2 112 100.0
Peaxi162Scf00286g00244 Petunia axillaris HOM05D002704 ORTHO05D002891 2.6e-45 185.7 116 78.4
COL.COLO4_24351 Corchorus olitorius HOM05D002704 ORTHO05D002891 2.9e-41 172.2 140 63.6
Duzib151G0761 Durio zibethinus HOM05D002704 ORTHO05D002891 6.5e-41 171.0 135 64.4
Duzib268G0568 Durio zibethinus HOM05D002704 ORTHO05D002891 1.9e-40 169.5 138 63.8
Duzib268G0864 Durio zibethinus HOM05D002704 ORTHO05D002891 3.3e-40 168.7 138 63.0
GSVIVG01013547001 Vitis vinifera HOM05D002704 ORTHO05D002891 3.3e-40 168.7 150 62.7
Thecc.04G181700 Theobroma cacao HOM05D002704 ORTHO05D002891 4.2e-40 168.3 144 61.1
Dinv44226 Davidia involucrata HOM05D002704 ORTHO05D002891 5.5e-40 167.9 152 62.5
Potri.014G150900 Populus trichocarpa HOM05D002704 ORTHO05D002891 9.5e-40 167.2 141 61.7
Potri.002G231400 Populus trichocarpa HOM05D002704 ORTHO05D002891 1.2e-39 166.8 141 60.3
CiPaw.01G106200 Carya illinoinensis HOM05D002704 ORTHO05D002891 2.1e-39 166.0 156 57.7
QL10p046538 Quercus lobata HOM05D002704 ORTHO05D002891 2.1e-39 166.0 142 58.5
Hma1.2p1_0429F.1_g151125 Hydrangea macrophylla HOM05D002704 ORTHO05D002891 1.0e-38 163.7 145 64.8
Sabra02G0176600 Salix brachista HOM05D002704 ORTHO05D002891 1.4e-38 163.3 147 58.5
CiPaw.02G057300 Carya illinoinensis HOM05D002704 ORTHO05D002891 2.3e-38 162.5 144 59.0
Manes.04G050300 Manihot esculenta HOM05D002704 ORTHO05D002891 5.7e-37 157.9 152 59.2
Gohir.A02G013402 Gossypium hirsutum HOM05D002704 ORTHO05D002891 9.8e-37 157.1 144 56.9
CSS0004996 Camellia sinensis var. sinensis HOM05D002704 ORTHO05D002891 1.7e-36 156.4 154 57.1
Manes.11G114400 Manihot esculenta HOM05D002704 ORTHO05D002891 1.7e-36 156.4 159 55.3
CSS0030073 Camellia sinensis var. sinensis HOM05D002704 ORTHO05D002891 8.3e-36 154.1 154 56.5
Prupe.1G182000 Prunus persica HOM05D002704 ORTHO05D002891 8.3e-36 154.1 131 58.0
Aqoxy2G04081 Aquilegia oxysepala HOM05D002704 ORTHO05D002891 1.1e-35 153.7 146 57.5
Aqoxy6G02333 Aquilegia oxysepala HOM05D002704 ORTHO05D002891 1.1e-35 153.7 146 57.5
Gorai.005G017900 Gossypium raimondii HOM05D002704 ORTHO05D002891 1.8e-35 152.9 145 55.2
Atru.chr3.1657 Acer truncatum HOM05D002704 ORTHO05D002891 3.1e-35 152.1 149 58.4
Oeu007224.1 Olea europaea HOM05D002704 ORTHO05D002891 3.1e-35 152.1 145 57.9
Oeu007226.1 Olea europaea HOM05D002704 ORTHO05D002891 3.1e-35 152.1 145 57.9
MSTRG.24593 Avicennia marina HOM05D002704 ORTHO05D002891 1.2e-34 150.2 119 64.7
Gohir.D02G014400 Gossypium hirsutum HOM05D002704 ORTHO05D002891 1.2e-34 150.2 146 58.2
Oeu006703.1 Olea europaea HOM05D002704 ORTHO05D002891 4.5e-34 148.3 157 53.5
PSO357G0625 Papaver somniferum HOM05D002704 ORTHO05D002891 7.8e-34 147.5 152 53.9
Peaxi162Scf00378g00084 Petunia axillaris HOM05D002704 ORTHO05D002891 2.9e-33 145.6 121 64.5
Cpa.g.c36743 Carica papaya HOM05D002704 ORTHO05D002891 1.5e-32 143.3 126 57.1
Sabra15G0066300 Salix brachista HOM05D002704 ORTHO05D002891 3.3e-32 142.1 172 46.5
Ciclev10023373m.g Citrus clementina HOM05D002704 ORTHO05D002891 7.3e-32 141.0 147 55.8
TAR633G1006 Trochodendron aralioides HOM05D002704 ORTHO05D002891 9.5e-32 140.6 142 52.8
Actinidia17222 Actinidia chinensis HOM05D002704 ORTHO05D002891 6.1e-31 137.9 145 56.6
Actinidia35890 Actinidia chinensis HOM05D002704 ORTHO05D002891 6.1e-31 137.9 145 57.2
SalBow6G4869 Salvia bowleyana HOM05D002704 ORTHO05D002891 4.0e-30 135.2 132 56.8
Sed0000491 Sechium edule HOM05D002704 ORTHO05D002891 4.0e-30 135.2 149 50.3
PSO170G1174 Papaver somniferum HOM05D002704 ORTHO05D002891 1.2e-29 133.7 146 52.7
HPP92_023705 Vanilla planifolia HOM05D002704 ORTHO05D002891 5.8e-29 131.3 137 52.6
ClCG08G004030 Citrullus lanatus HOM05D002704 ORTHO05D002891 1.4e-27 126.7 147 46.9
CsaV3_6G003190 Cucumis sativus L. HOM05D002704 ORTHO05D002891 3.2e-27 125.6 115 59.1
MBI08_g28697_MAGBIO Magnolia biondii HOM05D002704 ORTHO05D002891 7.0e-27 124.4 142 49.3
Zm00001eb133700 Zea mays HOM05D002704 ORTHO05D002891 1.6e-26 123.2 138 50.7
Zm00001eb411630 Zea mays HOM05D002704 ORTHO05D002891 7.8e-26 120.9 150 49.3
CANSAT78G1882 Cannabis sativa HOM05D002704 ORTHO05D002891 1.0e-25 120.6 156 48.1
Sed0010272 Sechium edule HOM05D002704 ORTHO05D002891 1.3e-25 120.2 111 54.1
Zm00001eb199020 Zea mays HOM05D002704 ORTHO05D002891 1.1e-24 117.1 142 47.2
Dinv22667 Davidia involucrata HOM05D002704 ORTHO05D002891 1.6e-23 113.2 61 82.0
Os11g0294400 Oryza sativa ssp. japonica HOM05D002704 ORTHO05D002891 1.6e-23 113.2 168 42.3
MBI11_g35640_MAGBIO Magnolia biondii HOM05D002704 ORTHO05D002891 4.4e-21 105.1 109 52.3
CDE08G0150 Ceratophyllum demersum HOM05D002704 ORTHO05D002891 5.8e-21 104.8 141 41.8
SEGI_20858 Sequoiadendron giganteum HOM05D002704 ORTHO05D002891 7.5e-21 104.4 152 38.2
SEGI_04164 Sequoiadendron giganteum HOM05D002704 ORTHO05D002891 9.8e-21 104.0 112 48.2
HPP92_011170 Vanilla planifolia HOM05D002704 ORTHO05D002891 9.2e-19 97.4 124 37.9
ATR0782G003 Amborella trichopoda HOM05D002704 ORTHO05D002891 2.1e-18 96.3 120 40.0
TWI56G1046 Tripterygium wilfordii HOM05D002704 ORTHO05D002891 3.9e-17 92.0 129 41.1
RcHm_v2.0_Chr7g0239041 Rosa chinensis HOM05D002704 ORTHO05D002891 7.3e-16 87.8 126 38.9
TWI12G0499 Tripterygium wilfordii HOM05D002704 ORTHO05D002891 9.5e-16 87.4 131 38.2
SGA_v2.0_scaffold31G12567 Striga asiatica HOM05D002704 ORTHO05D002891 2.1e-15 86.3 68 64.7
RcHm_v2.0_Chr4g0408971 Rosa chinensis HOM05D002704 ORTHO05D002891 2.8e-15 85.9 124 47.6
Aqoxy6G00791 Aquilegia oxysepala HOM05D002704 ORTHO05D002891 6.2e-15 84.7 140 35.7
FvH4_5g37370 Fragaria vesca HOM05D002704 ORTHO05D002891 6.2e-15 84.7 128 37.5
FAN04G1068 Fragaria x ananassa HOM05D002704 ORTHO05D002891 6.2e-15 84.7 128 37.5
FAN08G2281 Fragaria x ananassa HOM05D002704 ORTHO05D002891 6.2e-15 84.7 128 37.5
FAN13G2774 Fragaria x ananassa HOM05D002704 ORTHO05D002891 6.2e-15 84.7 128 37.5
Sed0024849 Sechium edule HOM05D002704 ORTHO05D002891 6.2e-15 84.7 137 37.2
Sed0023198 Sechium edule HOM05D002704 ORTHO05D002891 8.1e-15 84.3 128 33.6
HPP92_019307 Vanilla planifolia HOM05D002704 ORTHO05D002891 1.1e-14 84.0 135 34.8
CDE10G0971 Ceratophyllum demersum HOM05D002704 ORTHO05D002891 2.3e-14 82.8 146 34.2
CsaV3_2G029650 Cucumis sativus L. HOM05D002704 ORTHO05D002891 2.3e-14 82.8 143 31.5
Sed0020547 Sechium edule HOM05D002704 ORTHO05D002891 2.3e-14 82.8 153 32.0
GSVIVG01009025001 Vitis vinifera HOM05D002704 ORTHO05D002891 3.1e-14 82.4 141 33.3
FAN18G1803 Fragaria x ananassa HOM05D002704 ORTHO05D002891 4.0e-14 82.0 128 36.7
CDE10G0994 Ceratophyllum demersum HOM05D002704 ORTHO05D002891 5.2e-14 81.6 146 32.2
Os12g0233100 Oryza sativa ssp. japonica HOM05D002704 ORTHO05D002891 5.2e-14 81.6 111 45.0
TAR628G0302 Trochodendron aralioides HOM05D002704 ORTHO05D002891 5.2e-14 81.6 172 31.4
ClCG11G015290 Citrullus lanatus HOM05D002704 ORTHO05D002891 8.9e-14 80.9 163 33.7
Manes.02G153000 Manihot esculenta HOM05D002704 ORTHO05D002891 8.9e-14 80.9 172 29.1
ClCG08G011070 Citrullus lanatus HOM05D002704 ORTHO05D002891 1.2e-13 80.5 142 31.7
Duzib093G0662 Durio zibethinus HOM05D002704 ORTHO05D002891 1.2e-13 80.5 148 31.8
MELO3C011023.2 Cucumis melo HOM05D002704 ORTHO05D002891 1.5e-13 80.1 146 30.8
MBI05_g19349_MAGBIO Magnolia biondii HOM05D002704 ORTHO05D002891 2.6e-13 79.3 179 31.3
MELO3C003450.2 Cucumis melo HOM05D002704 ORTHO05D002891 3.4e-13 79.0 162 31.5
HPP92_011168 Vanilla planifolia HOM05D002704 ORTHO05D002891 3.4e-13 79.0 124 34.7
Gorai.009G237500 Gossypium raimondii HOM05D002704 ORTHO05D002891 4.4e-13 78.6 159 32.1
MD08G1182400 Malus domestica HOM05D002704 ORTHO05D002891 5.8e-13 78.2 155 32.9
Gohir.A05G226700 Gossypium hirsutum HOM05D002704 ORTHO05D002891 7.5e-13 77.8 147 32.7
Oeu012923.1 Olea europaea HOM05D002704 ORTHO05D002891 7.5e-13 77.8 137 31.4
Gohir.D05G229400 Gossypium hirsutum HOM05D002704 ORTHO05D002891 9.9e-13 77.4 159 32.1
Duzib116G0617 Durio zibethinus HOM05D002704 ORTHO05D002891 1.3e-12 77.0 158 30.4
Lsat_1_v5_gn_9_41620 Lactuca sativa HOM05D002704 ORTHO05D002891 1.3e-12 77.0 136 33.1
MD15G1368100 Malus domestica HOM05D002704 ORTHO05D002891 1.3e-12 77.0 143 31.5
CAN.G101.15 Capsicum annuum HOM05D002704 ORTHO05D002891 2.2e-12 76.3 139 33.8
Peaxi162Scf00041g00165 Petunia axillaris HOM05D002704 ORTHO05D002891 2.2e-12 76.3 139 31.7
Thecc.08G107400 Theobroma cacao HOM05D002704 ORTHO05D002891 2.2e-12 76.3 146 30.1
Atru.chr13.1197 Acer truncatum HOM05D002704 ORTHO05D002891 3.7e-12 75.5 149 30.9
CsaV3_3G048710 Cucumis sativus L. HOM05D002704 ORTHO05D002891 3.7e-12 75.5 164 31.7
Hund26960 Selenicereus undatus HOM05D002704 ORTHO05D002891 3.7e-12 75.5 159 28.9
Cpa.g.sc36.127 Carica papaya HOM05D002704 ORTHO05D002891 4.9e-12 75.1 152 30.9
Ciclev10002416m.g Citrus clementina HOM05D002704 ORTHO05D002891 6.4e-12 74.7 149 30.9
Ah.05g170030 Amaranthus hybridus HOM05D002704 ORTHO05D002891 8.3e-12 74.3 145 29.0
AUR62027750 Chenopodium quinoa HOM05D002704 ORTHO05D002891 8.3e-12 74.3 154 31.8
Lj4C103T16 Lonicera japonica HOM05D002704 ORTHO05D002891 8.3e-12 74.3 149 31.5
Nn5g30117 Nelumbo nucifera HOM05D002704 ORTHO05D002891 8.3e-12 74.3 160 30.6
Prupe.1G516300 Prunus persica HOM05D002704 ORTHO05D002891 8.3e-12 74.3 167 29.9
Solyc04g074080.3 Solanum lycopersicum HOM05D002704 ORTHO05D002891 8.3e-12 74.3 157 31.8
Actinidia10319 Actinidia chinensis HOM05D002704 ORTHO05D002891 1.1e-11 73.9 148 33.1
Dinv44770 Davidia involucrata HOM05D002704 ORTHO05D002891 1.1e-11 73.9 149 29.5
Duzib041G0800 Durio zibethinus HOM05D002704 ORTHO05D002891 1.1e-11 73.9 150 30.7
Hund16912 Selenicereus undatus HOM05D002704 ORTHO05D002891 1.1e-11 73.9 144 30.6
PGSC0003DMG400006402 Solanum tuberosum HOM05D002704 ORTHO05D002891 1.1e-11 73.9 143 33.6
TAR381G1126 Trochodendron aralioides HOM05D002704 ORTHO05D002891 1.1e-11 73.9 149 30.2
CiPaw.08G044800 Carya illinoinensis HOM05D002704 ORTHO05D002891 1.4e-11 73.6 158 27.8
Dinv14325 Davidia involucrata HOM05D002704 ORTHO05D002891 1.4e-11 73.6 147 29.9
CDE04G0076 Ceratophyllum demersum HOM05D002704 ORTHO05D002891 1.9e-11 73.2 142 30.3
DCAR_029361 Daucus carota HOM05D002704 ORTHO05D002891 1.9e-11 73.2 136 32.4
EL10Ac1g01225 Beta vulgaris HOM05D002704 ORTHO05D002891 2.4e-11 72.8 159 28.9
CSS0027836 Camellia sinensis var. sinensis HOM05D002704 ORTHO05D002891 2.4e-11 72.8 152 30.3
AUR62038516 Chenopodium quinoa HOM05D002704 ORTHO05D002891 2.4e-11 72.8 153 28.1
Manes.18G067800 Manihot esculenta HOM05D002704 ORTHO05D002891 2.4e-11 72.8 149 30.9
Potri.005G165300 Populus trichocarpa HOM05D002704 ORTHO05D002891 2.4e-11 72.8 153 29.4
Zm00001eb006930 Zea mays HOM05D002704 ORTHO05D002891 2.4e-11 72.8 139 28.1
Gohir.A02G076100 Gossypium hirsutum HOM05D002704 ORTHO05D002891 3.2e-11 72.4 137 33.6
Nitab4.5_0005777g0010 Nicotiana tabacum HOM05D002704 ORTHO05D002891 5.4e-11 71.6 139 31.7
PSO447G0371 Papaver somniferum HOM05D002704 ORTHO05D002891 5.4e-11 71.6 156 29.5
Gorai.005G094000 Gossypium raimondii HOM05D002704 ORTHO05D002891 7.1e-11 71.2 137 33.6
PSO210G1059 Papaver somniferum HOM05D002704 ORTHO05D002891 7.1e-11 71.2 154 29.9
Psat2g072240 Pisum sativum HOM05D002704 ORTHO05D002891 7.1e-11 71.2 127 36.2
Sc23g0000210 Simmondsia chinensis HOM05D002704 ORTHO05D002891 7.1e-11 71.2 158 28.5
HanXRQChr15g0491861 Helianthus annuus HOM05D002704 ORTHO05D002891 9.2e-11 70.9 140 29.3
TAR625G1386 Trochodendron aralioides HOM05D002704 ORTHO05D002891 9.2e-11 70.9 145 34.5
Nitab4.5_0000421g0060 Nicotiana tabacum HOM05D002704 ORTHO05D002891 1.6e-10 70.1 146 28.8
Hma1.2p1_0237F.1_g099460 Hydrangea macrophylla HOM05D002704 ORTHO05D002891 2.7e-10 69.3 149 28.2
Gohir.D02G083400 Gossypium hirsutum HOM05D002704 ORTHO05D002891 3.5e-10 68.9 137 32.8
Haze_22261 Corylus avellana HOM05D002704 ORTHO05D002891 4.6e-10 68.6 146 30.8
Nitab4.5_0000232g0230 Nicotiana tabacum HOM05D002704 ORTHO05D002891 4.6e-10 68.6 138 29.7
QL12p036715 Quercus lobata HOM05D002704 ORTHO05D002891 6.0e-10 68.2 147 27.9
Actinidia27183 Actinidia chinensis HOM05D002704 ORTHO05D002891 7.8e-10 67.8 148 30.4
Ca_05274_v3 Cicer arietinum L. HOM05D002704 ORTHO05D002891 7.8e-10 67.8 148 31.1
COL.COLO4_16406 Corchorus olitorius HOM05D002704 ORTHO05D002891 1.0e-09 67.4 161 26.7
Os03g0191200 Oryza sativa ssp. japonica HOM05D002704 ORTHO05D002891 1.3e-09 67.0 159 27.7
CANSAT25G0913 Cannabis sativa HOM05D002704 ORTHO05D002891 1.7e-09 66.6 196 27.0
Eucgr.F02409 Eucalyptus grandis HOM05D002704 ORTHO05D002891 1.7e-09 66.6 155 27.1
Sabra02G0075700 Salix brachista HOM05D002704 ORTHO05D002891 1.7e-09 66.6 150 28.0
Eucgr.B00020 Eucalyptus grandis HOM05D002704 ORTHO05D002891 2.3e-09 66.2 154 26.6
Potri.002G096100 Populus trichocarpa HOM05D002704 ORTHO05D002891 2.3e-09 66.2 150 27.3
MSTRG.24460 Avicennia marina HOM05D002704 ORTHO05D002891 5.1e-09 65.1 157 27.4
Oeu046295.1 Olea europaea HOM05D002704 ORTHO05D002891 5.1e-09 65.1 133 29.3
MSTRG.22153 Avicennia marina HOM05D002704 ORTHO05D002891 2.5e-08 62.8 146 26.7
Zm00001eb401340 Zea mays HOM05D002704 ORTHO05D002891 3.3e-08 62.4 137 28.5
Nn1g05351 Nelumbo nucifera HOM05D002704 ORTHO05D002891 4.3e-08 62.0 162 27.2
Lj1g0002648 Lotus japonicus HOM05D002704 ORTHO05D002891 7.3e-08 61.2 154 35.1
Rhsim06G0082500 Rhododendron simsii HOM05D002704 ORTHO05D002891 7.3e-08 61.2 155 27.7
Sc01g0000430 Simmondsia chinensis HOM05D002704 ORTHO05D002891 2.1e-07 59.7 150 28.0
Cc10_g07250 Coffea canephora HOM05D002704 ORTHO05D002891 2.8e-07 59.3 169 24.9
Medtr5g063720 Medicago truncatula HOM05D002704 ORTHO05D002891 2.8e-07 59.3 138 34.1
TPR.G32999 Trifolium pratense HOM05D002704 ORTHO05D002891 1.4e-06 57.0 126 31.0
Psat5g138480 Pisum sativum HOM05D002704 ORTHO05D002891 1.8e-06 56.6 154 29.2
Sabra05G0124600 Salix brachista HOM05D002704 ORTHO05D002891 1.8e-06 56.6 85 35.3
TPR.G34534 Trifolium pratense HOM05D002704 ORTHO05D002891 2.4e-06 56.2 149 30.9
vmacro21275 Vaccinium macrocarpon HOM05D002704 ORTHO05D002891 2.4e-06 56.2 136 25.7
Aqoxy2G01020 Aquilegia oxysepala HOM05D001667 ORTHO05D001508 6.8e-06 54.7 153 27.5
CDE12G0481 Ceratophyllum demersum HOM05D002704 ORTHO05D002891 8.9e-06 54.3 64 39.1


User provided reference genes

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