Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g036280 Solanum pennellii HOM05D003943 ORTHO05D004753 2.3e-145 518.8 261 100.0
PGSC0003DMG400021625 Solanum tuberosum HOM05D003943 ORTHO05D004753 6.8e-145 517.3 261 99.6
Dinv20358 Davidia involucrata HOM05D003943 ORTHO05D004753 2.1e-138 495.7 261 94.6
GSVIVG01011153001 Vitis vinifera HOM05D003943 ORTHO05D004753 6.2e-138 494.2 260 94.6
Lj6A21G25 Lonicera japonica HOM05D003943 ORTHO05D004753 1.8e-137 492.7 261 93.1
CSS0000599 Camellia sinensis var. sinensis HOM05D003943 ORTHO05D004753 5.2e-137 491.1 258 95.3
CiPaw.10G017400 Carya illinoinensis HOM05D003943 ORTHO05D004753 5.2e-137 491.1 261 93.9
MELO3C024586.2 Cucumis melo HOM05D003943 ORTHO05D004753 5.2e-137 491.1 261 94.3
Lsat_1_v5_gn_4_88760 Lactuca sativa HOM05D003943 ORTHO05D004753 5.2e-137 491.1 261 93.5
Oeu049654.1 Olea europaea HOM05D003943 ORTHO05D004753 5.2e-137 491.1 261 93.5
Actinidia38793 Actinidia chinensis HOM05D003943 ORTHO05D004753 6.8e-137 490.7 261 93.9
MSTRG.10894 Avicennia marina HOM05D003943 ORTHO05D004753 6.8e-137 490.7 261 93.5
Lj6A3G40 Lonicera japonica HOM05D003943 ORTHO05D004753 8.9e-137 490.3 260 93.1
Nn2g14305 Nelumbo nucifera HOM05D003943 ORTHO05D004753 8.9e-137 490.3 261 94.3
Ciclev10012509m.g Citrus clementina HOM05D003943 ORTHO05D004753 1.2e-136 490.0 261 94.3
Prupe.4G241300 Prunus persica HOM05D003943 ORTHO05D004753 1.5e-136 489.6 261 92.7
Actinidia21868 Actinidia chinensis HOM05D003943 ORTHO05D004753 2.0e-136 489.2 261 93.1
Rhsim08G0248000 Rhododendron simsii HOM05D003943 ORTHO05D004753 2.0e-136 489.2 261 92.3
CANSAT64G2459 Cannabis sativa HOM05D003943 ORTHO05D004753 2.6e-136 488.8 261 91.6
Haze_03432 Corylus avellana HOM05D003943 ORTHO05D004753 2.6e-136 488.8 261 93.1
Haze_20185 Corylus avellana HOM05D003943 ORTHO05D004753 2.6e-136 488.8 261 93.1
Lsat_1_v5_gn_6_32361 Lactuca sativa HOM05D003943 ORTHO05D004753 2.6e-136 488.8 260 93.5
vmacro18760 Vaccinium macrocarpon HOM05D003943 ORTHO05D004753 2.6e-136 488.8 265 92.1
TAR623G0676 Trochodendron aralioides HOM05D003943 ORTHO05D004753 3.4e-136 488.4 261 92.7
TAR633G0404 Trochodendron aralioides HOM05D003943 ORTHO05D004753 3.4e-136 488.4 261 93.1
Atru.chr12.911 Acer truncatum HOM05D003943 ORTHO05D004753 5.8e-136 487.6 261 93.5
Atru.chr8.1362 Acer truncatum HOM05D003943 ORTHO05D004753 5.8e-136 487.6 261 93.5
CsaV3_6G041100 Cucumis sativus L. HOM05D003943 ORTHO05D004753 5.8e-136 487.6 261 93.9
HanXRQChr09g0277391 Helianthus annuus HOM05D003943 ORTHO05D004753 5.8e-136 487.6 261 92.3
Oeu039454.1 Olea europaea HOM05D003943 ORTHO05D004753 7.5e-136 487.3 260 93.5
Nitab4.5_0008073g0030 Nicotiana tabacum HOM05D003943 ORTHO05D004753 9.8e-136 486.9 261 94.6
unitig_32.g11085 Utricularia gibba HOM05D003943 ORTHO05D004753 9.8e-136 486.9 260 93.5
HanXRQChr17g0533251 Helianthus annuus HOM05D003943 ORTHO05D004753 1.3e-135 486.5 261 92.0
ClCG01G015010 Citrullus lanatus HOM05D003943 ORTHO05D004753 1.7e-135 486.1 261 93.1
Manes.01G025400 Manihot esculenta HOM05D003943 ORTHO05D004753 2.9e-135 485.3 261 92.7
TWI77G0554 Tripterygium wilfordii HOM05D003943 ORTHO05D004753 4.9e-135 484.6 261 92.3
Manes.08G033500 Manihot esculenta HOM05D003943 ORTHO05D004753 6.4e-135 484.2 261 92.3
QL07p036748 Quercus lobata HOM05D003943 ORTHO05D004753 6.4e-135 484.2 260 91.9
RcHm_v2.0_Chr2g0122251 Rosa chinensis HOM05D003943 ORTHO05D004753 6.4e-135 484.2 261 91.2
RcHm_v2.0_Chr4g0409741 Rosa chinensis HOM05D003943 ORTHO05D004753 6.4e-135 484.2 261 91.2
Cfa010504 Carpinus fangiana HOM05D003943 ORTHO05D004753 1.4e-134 483.0 261 91.6
Sabra16G0070600 Salix brachista HOM05D003943 ORTHO05D004753 1.4e-134 483.0 261 93.1
Sabra16G0072800 Salix brachista HOM05D003943 ORTHO05D004753 1.4e-134 483.0 261 93.1
TWI74G1172 Tripterygium wilfordii HOM05D003943 ORTHO05D004753 1.4e-134 483.0 261 92.0
FvH4_1g24730 Fragaria vesca HOM05D003943 ORTHO05D004753 1.9e-134 482.6 261 90.8
FvH4_1g24810 Fragaria vesca HOM05D003943 ORTHO05D004753 1.9e-134 482.6 261 90.8
FAN19G3070 Fragaria x ananassa HOM05D003943 ORTHO05D004753 1.9e-134 482.6 261 90.8
THA.LOC104809953 Tarenaya hassleriana HOM05D003943 ORTHO05D004753 1.9e-134 482.6 261 92.7
MD05G1235300 Malus domestica HOM05D003943 ORTHO05D004753 2.4e-134 482.3 261 90.8
Sed0023950 Sechium edule HOM05D003943 ORTHO05D004753 2.4e-134 482.3 261 92.3
THA.LOC104826802 Tarenaya hassleriana HOM05D003943 ORTHO05D004753 3.2e-134 481.9 261 92.7
Potri.016G070400 Populus trichocarpa HOM05D003943 ORTHO05D004753 4.1e-134 481.5 261 92.3
Sed0024685 Sechium edule HOM05D003943 ORTHO05D004753 5.4e-134 481.1 261 92.0
Migut.I01176 Erythranthe guttata HOM05D003943 ORTHO05D004753 7.1e-134 480.7 261 91.2
Hma1.2p1_1104F.1_g257380 Hydrangea macrophylla HOM05D003943 ORTHO05D004753 9.2e-134 480.3 259 93.1
Peaxi162Scf00286g00330 Petunia axillaris HOM05D003943 ORTHO05D004753 9.2e-134 480.3 264 92.4
Hund10875 Selenicereus undatus HOM05D003943 ORTHO05D004753 1.6e-133 479.6 261 92.0
Eucgr.K02620 Eucalyptus grandis HOM05D003943 ORTHO05D004753 2.1e-133 479.2 261 91.6
Potri.006G203400 Populus trichocarpa HOM05D003943 ORTHO05D004753 2.7e-133 478.8 261 92.3
PGR004G2105 Punica granatum HOM05D003943 ORTHO05D004753 2.7e-133 478.8 261 91.6
PGR142G4032 Punica granatum HOM05D003943 ORTHO05D004753 2.7e-133 478.8 261 91.6
Cc04_g00390 Coffea canephora HOM05D003943 ORTHO05D004753 6.0e-133 477.6 269 89.6
MD10G1211300 Malus domestica HOM05D003943 ORTHO05D004753 7.8e-133 477.2 261 90.4
CDE10G1025 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 1.3e-132 476.5 261 91.2
ATR0772G207 Amborella trichopoda HOM05D003943 ORTHO05D004753 2.3e-132 475.7 261 90.0
Glyma.02G196900 Glycine max HOM05D003943 ORTHO05D004753 2.3e-132 475.7 261 90.0
arahy.Tifrunner.gnm1.ann1.07MWYB Arachis hypogaea HOM05D003943 ORTHO05D004753 3.0e-132 475.3 261 90.0
arahy.Tifrunner.gnm1.ann1.T05T6P Arachis hypogaea HOM05D003943 ORTHO05D004753 3.0e-132 475.3 261 90.0
Lalb_Chr11g0067891 Lupinus albus HOM05D003943 ORTHO05D004753 3.0e-132 475.3 261 90.4
Lj1g0010263 Lotus japonicus HOM05D003943 ORTHO05D004753 3.9e-132 474.9 261 89.3
Lalb_Chr02g0144091 Lupinus albus HOM05D003943 ORTHO05D004753 3.9e-132 474.9 261 90.0
Duzib093G1950 Durio zibethinus HOM05D003943 ORTHO05D004753 5.1e-132 474.6 261 90.4
SalBow6G5742 Salvia bowleyana HOM05D003943 ORTHO05D004753 5.1e-132 474.6 261 90.0
Phvul.007G268100 Phaseolus vulgaris HOM05D003943 ORTHO05D004753 6.6e-132 474.2 261 89.7
Glyma.10G081400 Glycine max HOM05D003943 ORTHO05D004753 8.6e-132 473.8 261 89.3
Glyma.10G002300 Glycine max HOM05D003943 ORTHO05D004753 1.1e-131 473.4 261 89.3
Cpa.g.sc104.32 Carica papaya HOM05D003943 ORTHO05D004753 1.9e-131 472.6 261 90.0
Phvul.010G103000 Phaseolus vulgaris HOM05D003943 ORTHO05D004753 2.5e-131 472.2 261 89.3
Gohir.A09G134200 Gossypium hirsutum HOM05D003943 ORTHO05D004753 3.3e-131 471.9 261 90.0
Gorai.006G149400 Gossypium raimondii HOM05D003943 ORTHO05D004753 3.3e-131 471.9 261 90.0
VMungo0331G0074 Vigna mungo HOM05D003943 ORTHO05D004753 4.3e-131 471.5 261 88.9
VMungo0720G1310 Vigna mungo HOM05D003943 ORTHO05D004753 4.3e-131 471.5 261 88.9
Thecc.05G104300 Theobroma cacao HOM05D003943 ORTHO05D004753 5.6e-131 471.1 261 90.0
Gohir.D01G191300 Gossypium hirsutum HOM05D003943 ORTHO05D004753 1.2e-130 469.9 261 89.3
Gorai.002G235200 Gossypium raimondii HOM05D003943 ORTHO05D004753 1.2e-130 469.9 261 89.3
Aa31sc52G210 Aethionema arabicum HOM05D003943 ORTHO05D004753 1.6e-130 469.5 261 90.0
COL.COLO4_29575 Corchorus olitorius HOM05D003943 ORTHO05D004753 2.1e-130 469.2 261 90.8
Mapoly0020s0123 Marchantia polymorpha HOM05D003943 ORTHO05D004753 2.8e-130 468.8 261 88.5
AT5G06360 Arabidopsis thaliana HOM05D003943 ORTHO05D004753 3.6e-130 468.4 261 90.0
Sp6g36490 Schrenkiella parvula HOM05D003943 ORTHO05D004753 6.2e-130 467.6 261 89.7
C09p70420 Brassica napus HOM05D003943 ORTHO05D004753 8.1e-130 467.2 260 89.6
BolC9t59788H Brassica oleracea HOM05D003943 ORTHO05D004753 8.1e-130 467.2 260 89.6
HPP92_002146 Vanilla planifolia HOM05D003943 ORTHO05D004753 8.1e-130 467.2 256 89.5
C02p02670 Brassica napus HOM05D003943 ORTHO05D004753 1.1e-129 466.8 261 89.3
BolC2t06233H Brassica oleracea HOM05D003943 ORTHO05D004753 1.1e-129 466.8 261 89.3
ECA233G4676 Erigeron canadensis HOM05D003943 ORTHO05D004753 1.1e-129 466.8 261 88.5
BcaB05g21673 Brassica carinata HOM05D003943 ORTHO05D004753 1.4e-129 466.5 261 88.9
BcaC03g13169 Brassica carinata HOM05D003943 ORTHO05D004753 1.4e-129 466.5 261 89.3
Gohir.A01G201400 Gossypium hirsutum HOM05D003943 ORTHO05D004753 1.4e-129 466.5 261 88.9
SGA_v2.0_scaffold71G24009 Striga asiatica HOM05D003943 ORTHO05D004753 1.8e-129 466.1 261 89.3
Sabra06G0156600 Salix brachista HOM05D003943 ORTHO05D004753 2.3e-129 465.7 285 84.6
SMO367G0573 Selaginella moellendorffii HOM05D003943 ORTHO05D004753 2.3e-129 465.7 261 87.0
A10p30010 Brassica napus HOM05D003943 ORTHO05D004753 6.8e-129 464.2 259 89.6
BraA10t45041Z Brassica rapa HOM05D003943 ORTHO05D004753 6.8e-129 464.2 259 89.6
Ca_16636_v3 Cicer arietinum L. HOM05D003943 ORTHO05D004753 8.9e-129 463.8 261 87.7
Pp3c7_2280 Physcomitrium patens HOM05D003943 ORTHO05D004753 8.9e-129 463.8 261 87.0
Aqoxy1G00659 Aquilegia oxysepala HOM05D003943 ORTHO05D004753 1.5e-128 463.0 261 87.7
BraA02t04878Z Brassica rapa HOM05D003943 ORTHO05D004753 1.5e-128 463.0 260 88.8
Ca_11700_v3 Cicer arietinum L. HOM05D003943 ORTHO05D004753 1.5e-128 463.0 261 88.1
FAN23G0735 Fragaria x ananassa HOM05D003943 ORTHO05D004753 1.5e-128 463.0 277 84.5
PSO384G4082 Papaver somniferum HOM05D003943 ORTHO05D004753 1.5e-128 463.0 261 87.4
PSO339G3654 Papaver somniferum HOM05D003943 ORTHO05D004753 2.6e-128 462.2 261 87.0
Psat6g114680 Pisum sativum HOM05D003943 ORTHO05D004753 2.6e-128 462.2 261 87.7
Thhalv10014439m.g Eutrema salsugineum HOM05D003943 ORTHO05D004753 5.8e-128 461.1 261 88.5
Carub.0006s0525 Capsella rubella HOM05D003943 ORTHO05D004753 7.6e-128 460.7 261 88.9
AagrBONN_evm.TU.Sc2ySwM_369.90 Anthoceros agrestis HOM05D003943 ORTHO05D004753 1.3e-127 459.9 261 86.2
CARHR207110 Cardamine hirsuta HOM05D003943 ORTHO05D004753 1.3e-127 459.9 261 87.4
AL6G16440 Arabidopsis lyrata HOM05D003943 ORTHO05D004753 1.7e-127 459.5 261 88.9
TPR.G5876 Trifolium pratense HOM05D003943 ORTHO05D004753 2.2e-127 459.1 261 88.9
EL10Ac5g12966 Beta vulgaris HOM05D003943 ORTHO05D004753 1.9e-126 456.1 260 88.8
Ah.12g059190 Amaranthus hybridus HOM05D003943 ORTHO05D004753 7.1e-126 454.1 261 86.2
AUR62036383 Chenopodium quinoa HOM05D003943 ORTHO05D004753 1.2e-125 453.4 261 87.0
Medtr3g088865 Medicago truncatula HOM05D003943 ORTHO05D004753 1.6e-125 453.0 261 85.8
Lj2g0010046 Lotus japonicus HOM05D003943 ORTHO05D004753 1.3e-124 449.9 261 86.6
CiPaw.09G020900 Carya illinoinensis HOM05D003943 ORTHO05D004753 3.9e-124 448.4 240 93.3
Medtr0508s0010 Medicago truncatula HOM05D003943 ORTHO05D004753 5.1e-124 448.0 261 85.4
AUR62030745 Chenopodium quinoa HOM05D003943 ORTHO05D004753 1.5e-123 446.4 256 86.7
CBR_g12036 Chara braunii HOM05D003943 ORTHO05D004753 2.5e-123 445.7 261 83.1
PGSC0003DMG400029099 Solanum tuberosum HOM05D003943 ORTHO05D004753 1.6e-122 443.0 261 88.5
FAN19G1372 Fragaria x ananassa HOM05D003943 ORTHO05D004753 6.2e-122 441.0 241 90.0
FAN28G2380 Fragaria x ananassa HOM05D003943 ORTHO05D004753 1.8e-121 439.5 241 89.6
TPR.G2813 Trifolium pratense HOM05D003943 ORTHO05D004753 4.0e-121 438.3 276 81.9
Os07g0673100 Oryza sativa ssp. japonica HOM05D003943 ORTHO05D004753 5.2e-121 438.0 261 83.9
Zm00001eb111290 Zea mays HOM05D003943 ORTHO05D004753 2.3e-116 422.5 261 80.5
Zm00001eb330440 Zea mays HOM05D003943 ORTHO05D004753 2.3e-116 422.5 261 80.5
MCO03G138 Micromonas commoda HOM05D003943 ORTHO05D004753 3.0e-116 422.2 261 75.9
Cre12.g507300 Chlamydomonas reinhardtii HOM05D003943 ORTHO05D004753 1.6e-114 416.4 261 78.2
PRCOL_00000915 Prasinoderma coloniale HOM05D003943 ORTHO05D004753 3.6e-114 415.2 261 78.9
Dinv37798 Davidia involucrata HOM05D003943 ORTHO05D004753 4.8e-114 414.8 213 95.3
Gohir.D09G130700 Gossypium hirsutum HOM05D003943 ORTHO05D004753 7.6e-112 407.5 261 81.6
AagrBONN_evm.TU.Sc2ySwM_340.394 Anthoceros agrestis HOM05D003943 ORTHO05D004753 9.9e-112 407.1 266 78.6
CAN.G710.48 Capsicum annuum HOM05D003943 ORTHO05D004753 1.1e-110 403.7 309 72.2
Rhsim05G0206200 Rhododendron simsii HOM05D003943 ORTHO05D004753 2.4e-110 402.5 261 80.5
FAN26G0481 Fragaria x ananassa HOM05D003943 ORTHO05D004753 1.0e-108 397.1 337 63.8
Sc14g0006610 Simmondsia chinensis HOM05D003943 ORTHO05D004753 1.0e-108 397.1 222 89.2
unitig_748.g7832 Utricularia gibba HOM05D003943 ORTHO05D004753 1.5e-107 393.3 201 95.0
DCAR_016668 Daucus carota HOM05D003943 ORTHO05D004753 1.1e-105 387.1 254 77.6
DCAR_017903 Daucus carota HOM05D003943 ORTHO05D004753 1.1e-105 387.1 240 80.4
Nitab4.5_0003291g0080 Nicotiana tabacum HOM05D003943 ORTHO05D004753 3.5e-101 372.1 258 79.5
SEGI_04875 Sequoiadendron giganteum HOM05D003943 ORTHO05D004753 1.0e-100 370.5 195 90.8
Aa31LG3G5080 Aethionema arabicum HOM05D003943 ORTHO05D004753 1.1e-99 367.1 200 91.5
Haze_27191 Corylus avellana HOM05D003943 ORTHO05D004753 6.0e-93 344.7 260 65.8
FAN23G1436 Fragaria x ananassa HOM05D003943 ORTHO05D004753 2.0e-88 329.7 177 89.3
Peaxi162Scf01149g00220 Petunia axillaris HOM05D003943 ORTHO05D004753 7.4e-83 311.2 161 93.8
Cfa024104 Carpinus fangiana HOM05D003943 ORTHO05D123184 5.5e-70 268.5 229 58.5
TPR.G6300 Trifolium pratense HOM05D003943 ORTHO05D004753 3.9e-68 262.3 240 59.6
BcaC06g32370 Brassica carinata HOM05D003943 ORTHO05D004753 4.4e-59 232.3 142 84.5
BcaNung06320 Brassica carinata HOM05D003943 ORTHO05D004753 5.7e-59 231.9 143 83.9
CDE10G0220 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 1.8e-57 226.9 113 96.5
CDE10G0110 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 5.3e-57 225.3 135 85.2
SHI12410 Sapria himalayana HOM05D003943 ORTHO05D004753 5.4e-49 198.7 98 94.9
Lsat_1_v5_gn_8_162181 Lactuca sativa HOM05D003943 ORTHO05D004753 6.1e-45 185.3 109 85.3
RcHm_v2.0_Chr7g0216551 Rosa chinensis HOM05D003943 ORTHO05D004753 2.6e-43 179.9 271 46.1
Duzib106G1686 Durio zibethinus HOM05D003943 ORTHO05D004753 1.2e-40 171.0 196 51.5
RcHm_v2.0_Chr7g0216591 Rosa chinensis HOM05D003943 ORTHO05D004753 5.9e-40 168.7 108 78.7
EL10Ac3g06422 Beta vulgaris HOM05D003943 ORTHO05D004753 1.7e-39 167.2 135 65.9
HanXRQChr03g0072971 Helianthus annuus HOM05D003943 ORTHO05D004753 1.9e-38 163.7 92 87.0
Lj9C540G13 Lonicera japonica HOM05D003943 ORTHO05D004753 6.1e-37 158.7 195 48.7
BcaC01g01015 Brassica carinata HOM05D003943 ORTHO05D004753 3.4e-35 152.9 106 77.4
SHI12413 Sapria himalayana HOM05D003943 ORTHO05D004753 1.7e-31 140.6 81 87.7
Lsat_1_v5_gn_6_65181 Lactuca sativa HOM05D003943 ORTHO05D000236 5.6e-30 135.6 92 75.0
Actinidia21636 Actinidia chinensis HOM05D003943 ORTHO05D004753 6.4e-26 122.1 111 62.2
SHI12416 Sapria himalayana HOM05D001600 ORTHO05D001502 1.7e-18 97.4 64 79.7
RcHm_v2.0_Chr7g0216581 Rosa chinensis HOM05D003943 ORTHO05D004753 1.9e-14 84.0 81 58.0
CAN.G1001.28 Capsicum annuum HOM05D003943 ORTHO05D005733 1.3e-10 71.2 59 64.4
SHI17182 Sapria himalayana HOM05D000004 ORTHO05D367797 2.4e-09 67.0 56 67.9
C03p87270 Brassica napus HOM05D000836 ORTHO05D000709 1.6e-08 64.3 44 75.0
Nitab4.5_0006519g0020 Nicotiana tabacum HOM05D000032 ORTHO05D005217 3.5e-08 63.2 52 67.3
SHI30650 Sapria himalayana HOM05D004596 ORTHO05D005853 7.8e-08 62.0 62 59.7
SHI32256 Sapria himalayana HOM05D003943 ORTHO05D001502 3.9e-07 59.7 36 80.6
BcaC05g26689 Brassica carinata HOM05D003943 ORTHO05D004753 6.6e-07 58.9 38 71.1
C04p30500 Brassica napus HOM05D002284 ORTHO05D033292 1.5e-06 57.8 34 79.4
PSO455G0142 Papaver somniferum HOM05D000539 ORTHO05D000233 2.5e-06 57.0 145 37.2
PSO170G4584 Papaver somniferum HOM05D000539 ORTHO05D000233 7.3e-06 55.5 145 36.6


User provided reference genes

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