Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g098140.4 Solanum lycopersicum HOM05D005454 ORTHO05D006781 3.6e-67 258.1 128 100.0
Sopen09g036090 Solanum pennellii HOM05D005454 ORTHO05D006781 3.6e-67 258.1 128 100.0
PGSC0003DMG400011901 Solanum tuberosum HOM05D005454 ORTHO05D006781 2.4e-66 255.4 128 98.4
CAN.G710.29 Capsicum annuum HOM05D005454 ORTHO05D006781 5.4e-63 244.2 128 92.2
Nitab4.5_0006630g0030 Nicotiana tabacum HOM05D005454 ORTHO05D006781 1.0e-61 240.0 128 89.8
Nitab4.5_0004200g0060 Nicotiana tabacum HOM05D005454 ORTHO05D006781 8.7e-61 236.9 128 89.1
Peaxi162Scf00286g00452 Petunia axillaris HOM05D005454 ORTHO05D006781 4.3e-60 234.6 128 87.5
TWI59G0830 Tripterygium wilfordii HOM05D005454 ORTHO05D006781 4.6e-54 214.5 127 78.7
COL.COLO4_19518 Corchorus olitorius HOM05D005454 ORTHO05D006781 7.9e-54 213.8 127 79.5
GSVIVG01036708001 Vitis vinifera HOM05D005454 ORTHO05D006781 1.0e-53 213.4 128 75.0
CiPaw.15G112200 Carya illinoinensis HOM05D005454 ORTHO05D006781 1.3e-53 213.0 127 78.7
TAR626G0894 Trochodendron aralioides HOM05D005454 ORTHO05D006781 1.3e-53 213.0 127 81.1
TWI38G1327 Tripterygium wilfordii HOM05D005454 ORTHO05D006781 1.8e-53 212.6 127 77.2
Aqoxy1G01376 Aquilegia oxysepala HOM05D005454 ORTHO05D006781 2.3e-53 212.2 125 81.6
Oeu029453.1 Olea europaea HOM05D005454 ORTHO05D006781 6.7e-53 210.7 128 75.8
Prupe.4G126700 Prunus persica HOM05D005454 ORTHO05D006781 6.7e-53 210.7 128 76.6
MD10G1217600 Malus domestica HOM05D005454 ORTHO05D006781 2.5e-52 208.8 128 75.8
Manes.16G045300 Manihot esculenta HOM05D005454 ORTHO05D006781 3.3e-52 208.4 127 76.4
ClCG02G018790 Citrullus lanatus HOM05D005454 ORTHO05D006781 9.6e-52 206.8 127 76.4
Migut.M01498 Erythranthe guttata HOM05D005454 ORTHO05D006781 9.6e-52 206.8 128 76.6
Cc00_g09040 Coffea canephora HOM05D005454 ORTHO05D006781 1.3e-51 206.5 128 75.0
Thecc.02G245200 Theobroma cacao HOM05D005454 ORTHO05D006781 1.3e-51 206.5 130 76.2
Duzib251G0225 Durio zibethinus HOM05D005454 ORTHO05D006781 2.8e-51 205.3 130 74.6
Atru.chr1.44 Acer truncatum HOM05D005454 ORTHO05D006781 1.1e-50 203.4 127 74.0
Ciclev10006210m.g Citrus clementina HOM05D005454 ORTHO05D006781 1.8e-50 202.6 127 70.9
Nn7g38402 Nelumbo nucifera HOM05D005454 ORTHO05D006781 2.4e-50 202.2 127 73.2
Sabra08G0060600 Salix brachista HOM05D005454 ORTHO05D006781 3.1e-50 201.8 127 73.2
Gohir.A02G014000 Gossypium hirsutum HOM05D005454 ORTHO05D006781 4.1e-50 201.4 115 81.7
QL04p094645 Quercus lobata HOM05D005454 ORTHO05D006781 4.1e-50 201.4 127 75.6
QL04p094846 Quercus lobata HOM05D005454 ORTHO05D006781 4.1e-50 201.4 127 75.6
Eucgr.F04477 Eucalyptus grandis HOM05D005454 ORTHO05D006781 5.3e-50 201.1 130 73.8
Gorai.002G165600 Gossypium raimondii HOM05D005454 ORTHO05D006781 6.9e-50 200.7 115 81.7
Gohir.D01G133900 Gossypium hirsutum HOM05D005454 ORTHO05D006781 9.0e-50 200.3 127 74.8
CiPaw.15G112600 Carya illinoinensis HOM05D005454 ORTHO05D006781 2.6e-49 198.7 149 67.1
Actinidia00854 Actinidia chinensis HOM05D005454 ORTHO05D006781 3.4e-49 198.4 128 72.7
CsaV3_6G013400 Cucumis sativus L. HOM05D005454 ORTHO05D006781 3.4e-49 198.4 127 73.2
SalBow8G4406 Salvia bowleyana HOM05D005454 ORTHO05D006781 3.4e-49 198.4 128 74.2
Sed0024280 Sechium edule HOM05D005454 ORTHO05D006781 5.8e-49 197.6 129 70.5
vmacro09764 Vaccinium macrocarpon HOM05D005454 ORTHO05D006781 1.0e-48 196.8 127 72.4
Duzib248G0167 Durio zibethinus HOM05D005454 ORTHO05D006781 1.3e-48 196.4 127 74.8
SalBow8G5040 Salvia bowleyana HOM05D005454 ORTHO05D006781 1.3e-48 196.4 128 73.4
SGA_v2.0_scaffold186G40175 Striga asiatica HOM05D005454 ORTHO05D006781 1.3e-48 196.4 124 73.4
Potri.008G081400 Populus trichocarpa HOM05D005454 ORTHO05D006781 1.7e-48 196.1 126 71.4
THA.LOC104812391 Tarenaya hassleriana HOM05D005454 ORTHO05D006781 3.8e-48 194.9 121 75.2
PSO675G7587 Papaver somniferum HOM05D005454 ORTHO05D006781 5.0e-48 194.5 114 81.6
Cpa.g.sc32.137 Carica papaya HOM05D005454 ORTHO05D006781 6.5e-48 194.1 121 74.4
PGR102G3369 Punica granatum HOM05D005454 ORTHO05D006781 8.4e-48 193.7 125 75.2
THA.LOC104808143 Tarenaya hassleriana HOM05D005454 ORTHO05D006781 8.4e-48 193.7 121 72.7
A07p27170 Brassica napus HOM05D005454 ORTHO05D006781 1.4e-47 193.0 126 73.0
BraA07t31955Z Brassica rapa HOM05D005454 ORTHO05D006781 1.4e-47 193.0 126 73.0
BcaC08g45360 Brassica carinata HOM05D005454 ORTHO05D006781 1.9e-47 192.6 126 73.0
C06p29920 Brassica napus HOM05D005454 ORTHO05D006781 1.9e-47 192.6 126 73.0
BraA07t30361Z Brassica rapa HOM05D005454 ORTHO05D006781 1.9e-47 192.6 126 73.0
CANSAT56G0738 Cannabis sativa HOM05D005454 ORTHO05D006781 2.5e-47 192.2 119 73.9
CANSAT56G1199 Cannabis sativa HOM05D005454 ORTHO05D006781 2.5e-47 192.2 119 73.9
Lj3g0001328 Lotus japonicus HOM05D005454 ORTHO05D006781 2.5e-47 192.2 117 76.9
Medtr8g447300 Medicago truncatula HOM05D005454 ORTHO05D006781 2.5e-47 192.2 113 77.9
unitig_32.g11075 Utricularia gibba HOM05D005454 ORTHO05D006781 2.5e-47 192.2 114 78.9
BcaB02g07212 Brassica carinata HOM05D005454 ORTHO05D006781 5.5e-47 191.0 126 72.2
BolC6t38153H Brassica oleracea HOM05D005454 ORTHO05D006781 5.5e-47 191.0 126 73.0
Lalb_Chr03g0031911 Lupinus albus HOM05D005454 ORTHO05D006781 5.5e-47 191.0 118 74.6
BcaC08g47498 Brassica carinata HOM05D005454 ORTHO05D006781 7.1e-47 190.7 126 72.2
C06p53270 Brassica napus HOM05D005454 ORTHO05D006781 7.1e-47 190.7 126 72.2
BolC6t40345H Brassica oleracea HOM05D005454 ORTHO05D006781 7.1e-47 190.7 126 72.2
Rhsim04G0003500 Rhododendron simsii HOM05D005454 ORTHO05D006781 7.1e-47 190.7 143 65.7
Glyma.11G026500 Glycine max HOM05D005454 ORTHO05D006781 1.6e-46 189.5 117 76.1
HanXRQChr13g0408901 Helianthus annuus HOM05D005454 ORTHO05D006781 2.1e-46 189.1 121 72.7
HanXRQChr13g0408931 Helianthus annuus HOM05D005454 ORTHO05D006781 2.1e-46 189.1 121 72.7
Lsat_1_v5_gn_5_184081 Lactuca sativa HOM05D005454 ORTHO05D006781 2.7e-46 188.7 113 76.1
Thhalv10019255m.g Eutrema salsugineum HOM05D005454 ORTHO05D006781 3.5e-46 188.3 128 69.5
RcHm_v2.0_Chr5g0023201 Rosa chinensis HOM05D005454 ORTHO05D006781 3.5e-46 188.3 128 72.7
CiPaw.15G112400 Carya illinoinensis HOM05D005454 ORTHO05D006781 6.1e-46 187.6 141 66.7
Ca_26272_v3 Cicer arietinum L. HOM05D005454 ORTHO05D006781 6.1e-46 187.6 114 76.3
Glyma.01G216400 Glycine max HOM05D005454 ORTHO05D006781 6.1e-46 187.6 117 75.2
Aa31LG4G1640 Aethionema arabicum HOM05D005454 ORTHO05D006781 1.0e-45 186.8 126 68.3
AT1G79390 Arabidopsis thaliana HOM05D005454 ORTHO05D006781 3.0e-45 185.3 126 68.3
Carub.0002s2625 Capsella rubella HOM05D005454 ORTHO05D006781 5.1e-45 184.5 126 69.0
TPR.G8202 Trifolium pratense HOM05D005454 ORTHO05D006781 5.1e-45 184.5 116 76.7
MD05G1239400 Malus domestica HOM05D005454 ORTHO05D006781 6.7e-45 184.1 118 72.0
FAN16G0850 Fragaria x ananassa HOM05D005454 ORTHO05D006781 8.7e-45 183.7 128 72.7
FAN21G1174 Fragaria x ananassa HOM05D005454 ORTHO05D006781 8.7e-45 183.7 128 72.7
Phvul.002G154100 Phaseolus vulgaris HOM05D005454 ORTHO05D006781 8.7e-45 183.7 117 71.8
VMungo1215G2509 Vigna mungo HOM05D005454 ORTHO05D006781 8.7e-45 183.7 117 73.5
Dinv42456 Davidia involucrata HOM05D005454 ORTHO05D006781 1.1e-44 183.3 118 74.6
Psat4g141200 Pisum sativum HOM05D005454 ORTHO05D006781 1.5e-44 183.0 113 76.1
AL2G40000 Arabidopsis lyrata HOM05D005454 ORTHO05D006781 1.9e-44 182.6 123 69.1
MSTRG.16083 Avicennia marina HOM05D005454 ORTHO05D006781 2.5e-44 182.2 117 71.8
ECA240G0828 Erigeron canadensis HOM05D005454 ORTHO05D006781 3.3e-44 181.8 128 68.0
FvH4_3g13970 Fragaria vesca HOM05D005454 ORTHO05D006781 3.3e-44 181.8 128 71.9
FAN11G3450 Fragaria x ananassa HOM05D005454 ORTHO05D006781 3.3e-44 181.8 128 71.9
ATR0820G041 Amborella trichopoda HOM05D005454 ORTHO05D006781 4.3e-44 181.4 118 72.9
arahy.Tifrunner.gnm1.ann1.DLUG3E Arachis hypogaea HOM05D005454 ORTHO05D006781 7.4e-44 180.6 122 72.1
Sc18g0003140 Simmondsia chinensis HOM05D005454 ORTHO05D006781 1.3e-43 179.9 119 70.6
arahy.Tifrunner.gnm1.ann1.TLTS2V Arachis hypogaea HOM05D005454 ORTHO05D006781 1.6e-43 179.5 125 70.4
Os02g0495900 Oryza sativa ssp. japonica HOM05D005454 ORTHO05D006781 3.7e-43 178.3 114 72.8
Zm00001eb241290 Zea mays HOM05D005454 ORTHO05D006781 3.7e-43 178.3 115 72.2
MBI13_g09219_MAGBIO Magnolia biondii HOM05D005454 ORTHO05D006781 6.3e-43 177.6 123 70.7
Hund10936 Selenicereus undatus HOM05D005454 ORTHO05D006781 1.1e-42 176.8 125 67.2
MELO3C019617.2 Cucumis melo HOM05D005454 ORTHO05D006781 1.4e-42 176.4 147 60.5
FAN25G3791 Fragaria x ananassa HOM05D005454 ORTHO05D006781 1.8e-42 176.0 127 70.1
Sabra10G0134500 Salix brachista HOM05D005454 ORTHO05D006781 3.1e-42 175.3 127 66.1
Ah.02g115510 Amaranthus hybridus HOM05D005454 ORTHO05D006781 6.9e-42 174.1 125 66.4
EL10Ac5g12502 Beta vulgaris HOM05D005454 ORTHO05D006781 2.0e-41 172.6 125 68.0
AUR62030518 Chenopodium quinoa HOM05D005454 ORTHO05D006781 3.8e-40 168.3 122 68.0
AUR62030774 Chenopodium quinoa HOM05D005454 ORTHO05D006781 5.0e-40 167.9 122 67.2
SEGI_00588 Sequoiadendron giganteum HOM05D005454 ORTHO05D006781 3.6e-38 161.8 129 63.6
CDE02G1314 Ceratophyllum demersum HOM05D000236 ORTHO05D000192 1.2e-30 136.7 88 77.3
Sp5g34440 Schrenkiella parvula HOM05D005454 ORTHO05D006781 1.7e-27 126.3 83 73.5
Pp3c27_5100 Physcomitrium patens HOM05D005454 ORTHO05D006781 1.1e-26 123.6 112 53.6
AagrBONN_evm.TU.Sc2ySwM_117.1988 Anthoceros agrestis HOM05D005454 ORTHO05D006781 4.5e-25 118.2 112 50.9
Gohir.A03G171875 Gossypium hirsutum HOM05D005454 ORTHO05D006781 7.7e-25 117.5 73 72.6
Haze_01788 Corylus avellana HOM05D005454 ORTHO05D006781 1.3e-24 116.7 72 70.8
Mapoly0011s0156 Marchantia polymorpha HOM05D005454 ORTHO05D006781 1.7e-24 116.3 112 51.8
Haze_08480 Corylus avellana HOM05D005454 ORTHO05D006781 8.5e-24 114.0 68 75.0
Cfa017755 Carpinus fangiana HOM05D005454 ORTHO05D006781 1.1e-23 113.6 68 73.5
Haze_18487 Corylus avellana HOM05D005454 ORTHO05D006781 1.5e-23 113.2 67 74.6
HPP92_015989 Vanilla planifolia HOM05D005454 ORTHO05D006781 1.5e-23 113.2 73 69.9
Hma1.2p1_0151F.1_g066990 Hydrangea macrophylla HOM05D005454 ORTHO05D006781 9.4e-23 110.5 68 70.6
CSS0036802 Camellia sinensis var. sinensis HOM05D005454 ORTHO05D006781 6.7e-21 104.4 67 67.2
Nn7g38396 Nelumbo nucifera HOM05D005454 ORTHO05D006781 6.7e-21 104.4 77 58.4
A07p44460 Brassica napus HOM05D005454 ORTHO05D006781 2.6e-20 102.4 68 67.6
CBR_g2846 Chara braunii HOM05D005454 ORTHO05D006781 3.7e-19 98.6 114 43.9
Cfa017757 Carpinus fangiana HOM05D005454 ORTHO05D006781 1.8e-18 96.3 59 79.7
CARHR073050 Cardamine hirsuta HOM05D005454 ORTHO05D006781 4.1e-18 95.1 57 80.7
BolC8t48807H Brassica oleracea HOM05D005454 ORTHO05D006781 9.1e-18 94.0 59 76.3
CDE04G2596 Ceratophyllum demersum HOM05D005454 ORTHO05D006781 9.1e-18 94.0 71 63.4
QL04p094659 Quercus lobata HOM05D005454 ORTHO05D006781 2.0e-17 92.8 60 78.3
Atru.chr1.31 Acer truncatum HOM05D005454 ORTHO05D006781 3.5e-17 92.0 81 60.5
Potri.010G174700 Populus trichocarpa HOM05D005454 ORTHO05D006781 4.5e-17 91.7 59 76.3
Actinidia03633 Actinidia chinensis HOM05D005454 ORTHO05D012925 1.7e-16 89.7 61 73.8
CARHR073040 Cardamine hirsuta HOM05D005454 ORTHO05D006781 3.2e-15 85.5 58 60.3
Cc00_g28770 Coffea canephora HOM05D001769 ORTHO05D001695 3.6e-14 82.0 63 63.5
C06p00690 Brassica napus HOM05D005454 ORTHO05D006781 6.1e-14 81.3 53 73.6
BolC6t35206H Brassica oleracea HOM05D005454 ORTHO05D006781 6.1e-14 81.3 53 73.6
Gohir.A04G138000 Gossypium hirsutum HOM05D005454 ORTHO05D006781 6.1e-14 81.3 57 70.2
SMO367G0923 Selaginella moellendorffii HOM05D005454 ORTHO05D006781 6.1e-14 81.3 121 37.2
C03p71170 Brassica napus HOM05D005454 ORTHO05D006781 1.0e-13 80.5 53 73.6
BcaC08g42854 Brassica carinata HOM05D005454 ORTHO05D006781 1.4e-13 80.1 46 80.4
DCAR_013713 Daucus carota HOM05D005454 ORTHO05D006781 5.2e-13 78.2 119 42.0
RcHm_v2.0_Chr5g0023191 Rosa chinensis HOM05D005454 ORTHO05D006781 8.3e-11 70.9 69 50.7
SGA_v2.0_scaffold29G12256 Striga asiatica HOM05D005454 ORTHO05D006781 7.2e-07 57.8 44 54.5


User provided reference genes

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