Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen09g035750 Solanum pennellii HOM05D012878 ORTHO05D005763 7.5e-47 190.7 135 100.0
CAN.G2020.3 Capsicum annuum HOM05D012878 ORTHO05D005763 1.4e-24 116.7 140 60.7
Peaxi162Scf00286g00087 Petunia axillaris HOM05D012878 ORTHO05D005763 3.9e-19 98.6 138 72.5
Nitab4.5_0000037g0280 Nicotiana tabacum HOM05D008132 ORTHO05D005763 9.6e-18 94.0 139 50.4
PGSC0003DMG400017918 Solanum tuberosum HOM05D008132 ORTHO05D005763 9.6e-18 94.0 135 60.0
Nitab4.5_0000037g0290 Nicotiana tabacum HOM05D008132 ORTHO05D005763 3.4e-15 85.5 135 42.2
QL08p029862 Quercus lobata HOM05D008132 ORTHO05D005763 1.7e-14 83.2 140 60.0
Nitab4.5_0000697g0230 Nicotiana tabacum HOM05D012878 ORTHO05D005763 2.2e-14 82.8 161 53.4
Solyc09g082810.3 Solanum lycopersicum HOM05D012878 ORTHO05D005763 8.4e-14 80.9 64 70.3
Sopen09g035740 Solanum pennellii HOM05D012878 ORTHO05D005763 8.4e-14 80.9 64 70.3
CAN.G1183.14 Capsicum annuum HOM05D012878 ORTHO05D018869 1.6e-12 76.6 63 74.6
EL10Ac9g22778 Beta vulgaris HOM05D008132 ORTHO05D005763 2.1e-12 76.3 141 56.0
PGSC0003DMG400031552 Solanum tuberosum HOM05D008132 ORTHO05D005763 3.5e-12 75.5 36 83.3
Actinidia09763 Actinidia chinensis HOM05D008132 ORTHO05D005763 7.9e-12 74.3 151 56.3
Nitab4.5_0000037g0350 Nicotiana tabacum HOM05D012878 ORTHO05D005763 7.9e-12 74.3 143 62.2
Peaxi162Scf00286g00820 Petunia axillaris HOM05D008132 ORTHO05D005763 1.8e-11 73.2 144 45.1
Solyc09g097780.2 Solanum lycopersicum HOM05D012878 ORTHO05D005763 3.0e-11 72.4 63 66.7
Sopen09g035730 Solanum pennellii HOM05D012878 ORTHO05D005763 3.0e-11 72.4 63 66.7
arahy.Tifrunner.gnm1.ann1.5E44W3 Arachis hypogaea HOM05D008132 ORTHO05D005763 3.9e-11 72.0 138 49.3
EL10Ac9g22777 Beta vulgaris HOM05D008132 ORTHO05D005763 3.3e-10 68.9 155 52.9
Nn1g09275 Nelumbo nucifera HOM05D008132 ORTHO05D005763 1.6e-09 66.6 141 55.3
Nitab4.5_0000037g0310 Nicotiana tabacum HOM05D012878 ORTHO05D005763 1.6e-09 66.6 80 56.2
Cpa.g.sc132.70 Carica papaya HOM05D008132 ORTHO05D005763 2.1e-09 66.2 144 45.1
Cpa.g.sc132.73 Carica papaya HOM05D008132 ORTHO05D005763 2.1e-09 66.2 144 45.1
Cc03_g08950 Coffea canephora HOM05D008132 ORTHO05D005763 2.1e-09 66.2 136 61.8
Oeu022674.1 Olea europaea HOM05D008132 ORTHO05D005763 2.1e-09 66.2 141 56.0
Migut.G00827 Erythranthe guttata HOM05D008132 ORTHO05D005763 1.4e-08 63.5 148 58.1
PGR142G4197 Punica granatum HOM05D008132 ORTHO05D005763 1.4e-08 63.5 154 47.4
GSVIVG01030407001 Vitis vinifera HOM05D008132 ORTHO05D005763 2.4e-08 62.8 169 50.3
Nitab4.5_0012211g0010 Nicotiana tabacum HOM05D008132 ORTHO05D005763 3.1e-08 62.4 35 71.4
Medtr5g084330 Medicago truncatula HOM05D009657 ORTHO05D005763 6.9e-08 61.2 140 49.3
Thecc.01G236900 Theobroma cacao HOM05D008132 ORTHO05D005763 6.9e-08 61.2 145 50.3
THA.LOC104826607 Tarenaya hassleriana HOM05D008158 ORTHO05D010323 1.2e-07 60.5 137 54.7
MSTRG.9644 Avicennia marina HOM05D008132 ORTHO05D005763 1.5e-07 60.1 135 52.6
COL.COLO4_04941 Corchorus olitorius HOM05D008132 ORTHO05D005763 1.5e-07 60.1 149 57.0
Thecc.01G186700 Theobroma cacao HOM05D008132 ORTHO05D005763 1.5e-07 60.1 143 44.8
Migut.G01096 Erythranthe guttata HOM05D008132 ORTHO05D005763 2.0e-07 59.7 144 55.6
Migut.G01155 Erythranthe guttata HOM05D008132 ORTHO05D005763 2.6e-07 59.3 148 53.4
ClCG02G002460 Citrullus lanatus HOM05D016168 ORTHO05D005763 4.5e-07 58.5 136 48.5
PGSC0003DMG400031523 Solanum tuberosum HOM05D016138 ORTHO05D005763 4.5e-07 58.5 38 68.4
AL3G42960 Arabidopsis lyrata HOM05D008158 ORTHO05D010323 5.8e-07 58.2 124 56.5
AT2G05540 Arabidopsis thaliana HOM05D008158 ORTHO05D010323 7.6e-07 57.8 134 56.7
Sopen09g035710 Solanum pennellii HOM05D016355 ORTHO05D015556 7.6e-07 57.8 51 58.8
MSTRG.9648 Avicennia marina HOM05D008132 ORTHO05D005763 1.0e-06 57.4 135 39.3
Peaxi162Scf00286g00091 Petunia axillaris HOM05D016138 ORTHO05D005763 1.0e-06 57.4 121 62.8
Nn3g19166 Nelumbo nucifera HOM05D008132 ORTHO05D005763 1.3e-06 57.0 144 49.3
PGSC0003DMG400031535 Solanum tuberosum HOM05D016355 ORTHO05D015556 1.3e-06 57.0 51 60.8
CANSAT64G2794 Cannabis sativa HOM05D008132 ORTHO05D005763 1.7e-06 56.6 146 41.8
CARHR103240 Cardamine hirsuta HOM05D008158 ORTHO05D010323 2.2e-06 56.2 124 51.6
COL.COLO4_04214 Corchorus olitorius HOM05D008132 ORTHO05D005763 2.9e-06 55.8 143 58.7
LjContig00357g0014262 Lotus japonicus HOM05D009657 ORTHO05D005763 2.9e-06 55.8 143 57.3
Thhalv10017460m.g Eutrema salsugineum HOM05D008158 ORTHO05D010323 3.8e-06 55.5 124 48.4
COL.COLO4_04943 Corchorus olitorius HOM05D008132 ORTHO05D005763 4.9e-06 55.1 137 47.4
Sed0028156 Sechium edule HOM05D023016 ORTHO05D025073 6.5e-06 54.7 33 60.6
CAN.G1405.2 Capsicum annuum HOM05D016355 ORTHO05D015556 8.4e-06 54.3 52 63.5
CiPaw.03G275800 Carya illinoinensis HOM05D052008 ORTHO05D005763 8.4e-06 54.3 144 34.7
MD09G1118100 Malus domestica HOM05D008132 ORTHO05D005763 8.4e-06 54.3 137 47.4


User provided reference genes

Program Settings